Wall clock time and date at job start Tue Mar 31 2020 18:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.46556 * 2 1 4 4 C 1.53002 * 109.46970 * 240.00463 * 2 1 3 5 5 N 1.46500 * 109.46734 * 184.99889 * 4 2 1 6 6 C 1.34781 * 119.99896 * 180.02562 * 5 4 2 7 7 O 1.21766 * 119.99883 * 359.97438 * 6 5 4 8 8 C 1.46107 * 119.99937 * 179.97438 * 6 5 4 9 9 S 1.75816 * 125.48154 * 0.12017 * 8 6 5 10 10 C 1.70566 * 91.67487 * 180.23005 * 9 8 6 11 11 C 1.33577 * 111.17721 * 359.80342 * 10 9 8 12 12 C 1.37354 * 125.47496 * 179.97438 * 8 6 5 13 13 N 1.39885 * 123.48872 * 359.97438 * 12 8 6 14 14 C 1.36597 * 125.66803 * 309.40956 * 13 12 8 15 15 C 1.34842 * 108.19940 * 179.89360 * 14 13 12 16 16 C 1.40970 * 107.46997 * 0.37316 * 15 14 13 17 17 C 1.34844 * 107.47526 * 359.76722 * 16 15 14 18 18 N 1.46491 * 109.47008 * 120.00500 * 2 1 3 19 19 C 1.46493 * 120.00371 * 60.00202 * 18 2 1 20 20 C 1.36937 * 119.99575 * 240.00227 * 18 2 1 21 21 H 1.07997 * 120.00310 * 23.11605 * 20 18 2 22 22 C 1.38823 * 119.99670 * 203.11811 * 20 18 2 23 23 N 1.31618 * 120.00074 * 11.69356 * 22 20 18 24 24 Si 1.86802 * 119.99662 * 191.69860 * 22 20 18 25 25 H 1.48494 * 109.47299 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47080 * 120.00056 * 24 22 20 27 27 H 1.48502 * 109.46733 * 239.99678 * 24 22 20 28 28 H 1.08996 * 109.46795 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46995 * 299.99578 * 1 2 3 30 30 H 1.09006 * 109.47004 * 59.99800 * 1 2 3 31 31 H 1.09006 * 109.47114 * 64.99910 * 4 2 1 32 32 H 1.08997 * 109.46953 * 304.99934 * 4 2 1 33 33 H 0.96996 * 120.00162 * 0.02562 * 5 4 2 34 34 H 1.08008 * 124.40898 * 179.84649 * 10 9 8 35 35 H 1.07995 * 122.45989 * 180.02562 * 11 10 9 36 36 H 1.08001 * 125.90457 * 0.02562 * 14 13 12 37 37 H 1.07997 * 126.26817 * 180.14064 * 15 14 13 38 38 H 1.08002 * 126.26560 * 179.74890 * 16 15 14 39 39 H 1.08000 * 125.90302 * 179.97438 * 17 16 15 40 40 H 1.08997 * 109.47488 * 93.92945 * 19 18 2 41 41 H 1.09004 * 109.47096 * 213.93118 * 19 18 2 42 42 H 1.09006 * 109.47395 * 333.92692 * 19 18 2 43 43 H 0.96996 * 119.99675 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5001 -0.8262 -1.1906 6 6 4.1732 -1.4281 -2.1913 7 8 3.5677 -1.8848 -3.1439 8 6 5.6293 -1.5324 -2.1330 9 16 6.6444 -0.9287 -0.8306 10 6 8.0588 -1.4723 -1.6136 11 6 7.7694 -2.0693 -2.7730 12 6 6.4252 -2.1203 -3.0857 13 7 5.9262 -2.7048 -4.2546 14 6 4.9167 -3.6228 -4.3178 15 6 4.7210 -3.9450 -5.6125 16 6 5.6474 -3.2070 -6.3770 17 6 6.3717 -2.4570 -5.5219 18 7 2.0183 -0.6907 1.1960 19 6 1.6645 -2.0932 1.4278 20 6 2.8056 -0.0252 2.0975 21 1 2.7706 1.0528 2.1525 22 6 3.6486 -0.7363 2.9406 23 7 3.8673 -2.0163 2.7259 24 14 4.4725 0.1236 4.3798 25 1 4.0660 1.5517 4.4018 26 1 4.0595 -0.5287 5.6484 27 1 5.9473 0.0314 4.2330 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.7516 -0.1581 -2.1370 32 1 1.6054 -1.7197 -1.2953 33 1 3.9824 -0.4627 -0.4316 34 1 9.0582 -1.3504 -1.2226 35 1 8.5307 -2.4824 -3.4181 36 1 4.3683 -4.0202 -3.4765 37 1 3.9910 -4.6436 -5.9937 38 1 5.7571 -3.2370 -7.4510 39 1 7.1669 -1.7781 -5.7923 40 1 2.4508 -2.7364 1.0326 41 1 1.5555 -2.2683 2.4981 42 1 0.7239 -2.3185 0.9251 43 1 4.4561 -2.5131 3.3152 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329501168.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:49 Heat of formation + Delta-G solvation = 84.627810 kcal Electronic energy + Delta-G solvation = -26742.438713 eV Core-core repulsion = 23109.719066 eV Total energy + Delta-G solvation = -3632.719647 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.28780 -39.15750 -37.53566 -36.62649 -33.74596 -32.15299 -31.74011 -29.67754 -29.08717 -28.42744 -26.10219 -25.90289 -24.34275 -23.09413 -21.27943 -20.88185 -20.09493 -19.51504 -18.83608 -18.16007 -16.99143 -16.97913 -15.65149 -15.39389 -15.16059 -14.76524 -14.64595 -14.21984 -13.94032 -13.74257 -13.40968 -13.11748 -12.96796 -12.72872 -12.64548 -12.34166 -12.18719 -12.11269 -12.04566 -11.78012 -11.63611 -11.14429 -10.92715 -10.88200 -10.75673 -10.46776 -10.34121 -9.93501 -9.85000 -9.64560 -9.26399 -8.85119 -8.67082 -8.43673 -7.99890 -7.80435 -6.88219 -5.83126 -3.31553 0.41609 1.41028 1.82322 2.03917 2.79151 3.23159 3.27216 3.35818 3.37212 3.37374 3.47633 3.64106 4.37525 4.83491 5.04055 5.17838 5.29430 5.30152 5.33571 5.52464 5.54724 5.61332 5.74669 5.82673 5.89030 5.97927 6.03810 6.04268 6.10274 6.29858 6.34680 6.50930 6.56030 6.64179 6.75100 6.83946 7.00420 7.23854 7.33768 7.47196 7.66511 7.71365 7.72332 8.03595 8.27931 8.62190 9.12334 9.74945 10.25099 11.19693 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013305 B = 0.004361 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.900252 B = 6419.662634 C = 7923.285927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.157 3.843 3 H 0.068 0.932 4 C 0.109 3.891 5 N -0.693 5.693 6 C 0.578 3.422 7 O -0.533 6.533 8 C -0.270 4.270 9 S 0.293 5.707 10 C -0.239 4.239 11 C -0.152 4.152 12 C 0.167 3.833 13 N -0.384 5.384 14 C 0.058 3.942 15 C -0.217 4.217 16 C -0.191 4.191 17 C -0.025 4.025 18 N -0.595 5.595 19 C 0.163 3.837 20 C -0.263 4.263 21 H 0.068 0.932 22 C 0.009 3.991 23 N -0.899 5.899 24 Si 0.897 3.103 25 H -0.278 1.278 26 H -0.290 1.290 27 H -0.289 1.289 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.046 0.954 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.412 0.588 34 H 0.175 0.825 35 H 0.147 0.853 36 H 0.157 0.843 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.156 0.844 40 H 0.028 0.972 41 H 0.043 0.957 42 H -0.002 1.002 43 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.105 1.119 -10.173 11.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.048 3.952 3 H 0.087 0.913 4 C -0.017 4.017 5 N -0.343 5.343 6 C 0.363 3.637 7 O -0.413 6.413 8 C -0.393 4.393 9 S 0.562 5.438 10 C -0.377 4.377 11 C -0.184 4.184 12 C 0.059 3.941 13 N -0.058 5.058 14 C -0.070 4.070 15 C -0.241 4.241 16 C -0.216 4.216 17 C -0.151 4.151 18 N -0.318 5.318 19 C 0.019 3.981 20 C -0.392 4.392 21 H 0.086 0.914 22 C -0.191 4.191 23 N -0.543 5.543 24 Si 0.727 3.273 25 H -0.203 1.203 26 H -0.216 1.216 27 H -0.216 1.216 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.249 0.751 34 H 0.192 0.808 35 H 0.165 0.835 36 H 0.174 0.826 37 H 0.151 0.849 38 H 0.151 0.849 39 H 0.174 0.826 40 H 0.046 0.954 41 H 0.061 0.939 42 H 0.017 0.983 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 5.595 1.597 -9.034 10.746 hybrid contribution 1.146 -0.296 -0.028 1.184 sum 6.741 1.302 -9.063 11.369 Atomic orbital electron populations 1.22161 0.97312 1.01520 1.00719 1.20664 0.92750 0.95877 0.85886 0.91329 1.21993 0.79170 1.01285 0.99220 1.45732 1.08549 1.57757 1.22300 1.16727 0.84413 0.79214 0.83378 1.90856 1.68545 1.48650 1.33246 1.24819 0.99118 1.12484 1.02844 1.83874 0.92348 1.50767 1.16788 1.25183 1.05627 1.06609 1.00311 1.19641 0.94692 1.05299 0.98776 1.16917 0.91474 0.97904 0.87798 1.40867 1.28895 1.32702 1.03313 1.21777 0.92399 0.93960 0.98901 1.20783 1.04174 1.06720 0.92389 1.20820 1.00192 1.02066 0.98489 1.21738 1.04765 1.06314 0.82274 1.43954 1.57904 1.09708 1.20195 1.20752 0.93926 0.84415 0.99022 1.19265 1.16095 0.91183 1.12698 0.91423 1.24991 0.97832 0.96082 1.00161 1.70083 1.38836 1.07290 1.38134 0.86310 0.79028 0.79025 0.82947 1.20327 1.21635 1.21637 0.92899 0.92360 0.93521 0.92583 0.92084 0.75107 0.80796 0.83530 0.82573 0.84857 0.84880 0.82631 0.95366 0.93866 0.98312 0.93712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.54 9.18 37.16 0.34 -2.20 16 2 C 0.16 2.93 2.87 -67.93 -0.19 2.73 16 3 H 0.07 1.27 7.86 -51.93 -0.41 0.86 16 4 C 0.11 2.01 4.97 -4.04 -0.02 1.99 16 5 N -0.69 -13.30 5.38 -61.79 -0.33 -13.63 16 6 C 0.58 11.19 7.72 -13.10 -0.10 11.09 16 7 O -0.53 -11.28 13.05 5.13 0.07 -11.21 16 8 C -0.27 -4.60 6.43 -36.75 -0.24 -4.84 16 9 S 0.29 4.23 22.13 -107.50 -2.38 1.86 16 10 C -0.24 -2.78 10.90 29.10 0.32 -2.46 16 11 C -0.15 -1.93 9.97 -41.26 -0.41 -2.34 16 12 C 0.17 2.64 5.99 -84.55 -0.51 2.14 16 13 N -0.38 -6.31 2.65 -61.59 -0.16 -6.47 16 14 C 0.06 1.00 8.53 -16.63 -0.14 0.86 16 15 C -0.22 -3.39 10.86 -39.75 -0.43 -3.82 16 16 C -0.19 -2.73 10.86 -39.75 -0.43 -3.16 16 17 C -0.02 -0.36 11.24 -16.63 -0.19 -0.54 16 18 N -0.59 -13.30 2.28 -173.49 -0.40 -13.70 16 19 C 0.16 3.78 8.11 59.84 0.49 4.26 16 20 C -0.26 -6.42 9.32 -15.06 -0.14 -6.56 16 21 H 0.07 1.64 7.82 -52.49 -0.41 1.23 16 22 C 0.01 0.21 5.12 -17.43 -0.09 0.12 16 23 N -0.90 -23.61 10.65 55.49 0.59 -23.01 16 24 Si 0.90 20.02 29.57 -169.99 -5.03 14.99 16 25 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 26 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 27 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 28 H 0.05 0.86 6.66 -51.93 -0.35 0.52 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.06 1.20 7.84 -51.93 -0.41 0.79 16 33 H 0.41 8.22 6.99 -40.82 -0.29 7.94 16 34 H 0.17 1.46 8.06 -52.48 -0.42 1.03 16 35 H 0.15 1.54 8.06 -52.49 -0.42 1.12 16 36 H 0.16 2.80 7.45 -52.49 -0.39 2.41 16 37 H 0.13 1.83 8.06 -52.49 -0.42 1.40 16 38 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 39 H 0.16 1.80 8.06 -52.49 -0.42 1.38 16 40 H 0.03 0.72 7.41 -51.93 -0.38 0.33 16 41 H 0.04 1.09 7.23 -51.93 -0.38 0.71 16 42 H 0.00 -0.03 6.43 -51.93 -0.33 -0.37 16 43 H 0.25 6.54 8.31 -40.82 -0.34 6.20 16 LS Contribution 367.83 15.07 5.54 5.54 Total: -1.00 -28.73 367.83 -9.71 -38.43 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -5.86 Total: 9.94 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -1.75 Total: -2.73 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: -0.30 Total: -56.82 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.07 Total: -11.21 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.03 Total: 14.99 kcal Atomic # 16 Polarization: 4.23 SS G_CDS: -2.38 Total: 1.86 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -28.73 -9.71 -38.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329501168.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.062 kcal (2) G-P(sol) polarization free energy of solvation -28.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds