Wall clock time and date at job start Tue Mar 31 2020 18:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.46556 * 2 1 4 4 C 1.53002 * 109.46970 * 240.00463 * 2 1 3 5 5 N 1.46500 * 109.46734 * 184.99889 * 4 2 1 6 6 C 1.34781 * 119.99896 * 180.02562 * 5 4 2 7 7 O 1.21766 * 119.99883 * 359.97438 * 6 5 4 8 8 C 1.46107 * 119.99937 * 179.97438 * 6 5 4 9 9 S 1.75816 * 125.48154 * 0.12017 * 8 6 5 10 10 C 1.70566 * 91.67487 * 180.23005 * 9 8 6 11 11 C 1.33577 * 111.17721 * 359.80342 * 10 9 8 12 12 C 1.37354 * 125.47496 * 179.97438 * 8 6 5 13 13 N 1.39885 * 123.48872 * 359.97438 * 12 8 6 14 14 C 1.36597 * 125.66803 * 309.40956 * 13 12 8 15 15 C 1.34842 * 108.19940 * 179.89360 * 14 13 12 16 16 C 1.40970 * 107.46997 * 0.37316 * 15 14 13 17 17 C 1.34844 * 107.47526 * 359.76722 * 16 15 14 18 18 N 1.46491 * 109.47008 * 120.00500 * 2 1 3 19 19 C 1.46493 * 120.00371 * 60.00202 * 18 2 1 20 20 C 1.36937 * 119.99575 * 240.00227 * 18 2 1 21 21 H 1.07997 * 120.00310 * 23.11605 * 20 18 2 22 22 C 1.38823 * 119.99670 * 203.11811 * 20 18 2 23 23 N 1.31618 * 120.00074 * 11.69356 * 22 20 18 24 24 Si 1.86802 * 119.99662 * 191.69860 * 22 20 18 25 25 H 1.48494 * 109.47299 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47080 * 120.00056 * 24 22 20 27 27 H 1.48502 * 109.46733 * 239.99678 * 24 22 20 28 28 H 1.08996 * 109.46795 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46995 * 299.99578 * 1 2 3 30 30 H 1.09006 * 109.47004 * 59.99800 * 1 2 3 31 31 H 1.09006 * 109.47114 * 64.99910 * 4 2 1 32 32 H 1.08997 * 109.46953 * 304.99934 * 4 2 1 33 33 H 0.96996 * 120.00162 * 0.02562 * 5 4 2 34 34 H 1.08008 * 124.40898 * 179.84649 * 10 9 8 35 35 H 1.07995 * 122.45989 * 180.02562 * 11 10 9 36 36 H 1.08001 * 125.90457 * 0.02562 * 14 13 12 37 37 H 1.07997 * 126.26817 * 180.14064 * 15 14 13 38 38 H 1.08002 * 126.26560 * 179.74890 * 16 15 14 39 39 H 1.08000 * 125.90302 * 179.97438 * 17 16 15 40 40 H 1.08997 * 109.47488 * 93.92945 * 19 18 2 41 41 H 1.09004 * 109.47096 * 213.93118 * 19 18 2 42 42 H 1.09006 * 109.47395 * 333.92692 * 19 18 2 43 43 H 0.96996 * 119.99675 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5001 -0.8262 -1.1906 6 6 4.1732 -1.4281 -2.1913 7 8 3.5677 -1.8848 -3.1439 8 6 5.6293 -1.5324 -2.1330 9 16 6.6444 -0.9287 -0.8306 10 6 8.0588 -1.4723 -1.6136 11 6 7.7694 -2.0693 -2.7730 12 6 6.4252 -2.1203 -3.0857 13 7 5.9262 -2.7048 -4.2546 14 6 4.9167 -3.6228 -4.3178 15 6 4.7210 -3.9450 -5.6125 16 6 5.6474 -3.2070 -6.3770 17 6 6.3717 -2.4570 -5.5219 18 7 2.0183 -0.6907 1.1960 19 6 1.6645 -2.0932 1.4278 20 6 2.8056 -0.0252 2.0975 21 1 2.7706 1.0528 2.1525 22 6 3.6486 -0.7363 2.9406 23 7 3.8673 -2.0163 2.7259 24 14 4.4725 0.1236 4.3798 25 1 4.0660 1.5517 4.4018 26 1 4.0595 -0.5287 5.6484 27 1 5.9473 0.0314 4.2330 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.7516 -0.1581 -2.1370 32 1 1.6054 -1.7197 -1.2953 33 1 3.9824 -0.4627 -0.4316 34 1 9.0582 -1.3504 -1.2226 35 1 8.5307 -2.4824 -3.4181 36 1 4.3683 -4.0202 -3.4765 37 1 3.9910 -4.6436 -5.9937 38 1 5.7571 -3.2370 -7.4510 39 1 7.1669 -1.7781 -5.7923 40 1 2.4508 -2.7364 1.0326 41 1 1.5555 -2.2683 2.4981 42 1 0.7239 -2.3185 0.9251 43 1 4.4561 -2.5131 3.3152 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329501168.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:48 Heat of formation + Delta-G solvation = 70.001379 kcal Electronic energy + Delta-G solvation = -26743.072963 eV Core-core repulsion = 23109.719066 eV Total energy + Delta-G solvation = -3633.353897 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.46715 -40.60386 -38.76346 -38.18296 -35.40371 -33.82975 -32.86520 -31.29576 -30.43527 -29.60164 -27.99656 -27.25100 -25.54964 -24.84785 -22.45256 -22.17981 -21.26469 -21.10525 -20.00311 -19.53573 -18.81758 -18.20163 -17.14314 -16.96731 -16.56177 -16.27187 -15.77079 -15.67769 -15.33317 -15.02398 -14.71711 -14.69348 -14.37633 -14.20931 -13.97983 -13.75612 -13.55038 -13.39773 -13.20373 -13.15436 -12.92895 -12.82739 -12.60722 -12.47649 -12.28247 -12.06443 -12.00013 -11.74041 -11.49381 -11.12928 -10.59232 -10.40481 -10.14275 -9.79473 -9.16075 -9.00084 -8.75506 -7.74847 -5.24781 -0.75181 0.26776 0.76327 0.97671 1.48825 1.54400 1.60397 1.61076 2.03782 2.10052 2.18268 2.24753 2.54472 3.38930 3.63419 3.75459 3.93648 3.98216 4.05283 4.29063 4.35004 4.36455 4.53436 4.59012 4.66814 4.68028 4.76246 4.79380 4.83694 4.92884 5.00296 5.07602 5.24894 5.30198 5.35875 5.40114 5.41996 5.56532 5.71347 5.75521 6.08347 6.28711 6.37804 6.51608 6.55742 7.13087 7.20614 7.90479 8.37275 9.26648 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013305 B = 0.004361 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.900252 B = 6419.662634 C = 7923.285927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.156 3.844 3 H 0.073 0.927 4 C 0.116 3.884 5 N -0.697 5.697 6 C 0.573 3.427 7 O -0.560 6.560 8 C -0.311 4.311 9 S 0.275 5.725 10 C -0.203 4.203 11 C -0.157 4.157 12 C 0.166 3.834 13 N -0.393 5.393 14 C 0.025 3.975 15 C -0.220 4.220 16 C -0.197 4.197 17 C -0.024 4.024 18 N -0.602 5.602 19 C 0.183 3.817 20 C -0.263 4.263 21 H 0.072 0.928 22 C -0.033 4.033 23 N -0.925 5.925 24 Si 0.951 3.049 25 H -0.269 1.269 26 H -0.301 1.301 27 H -0.288 1.288 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.044 0.956 33 H 0.407 0.593 34 H 0.216 0.784 35 H 0.176 0.824 36 H 0.134 0.866 37 H 0.146 0.854 38 H 0.162 0.838 39 H 0.188 0.812 40 H -0.002 1.002 41 H 0.016 0.984 42 H 0.020 0.980 43 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.740 2.412 -11.262 13.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.049 3.951 3 H 0.092 0.908 4 C -0.010 4.010 5 N -0.347 5.347 6 C 0.360 3.640 7 O -0.442 6.442 8 C -0.434 4.434 9 S 0.544 5.456 10 C -0.341 4.341 11 C -0.188 4.188 12 C 0.058 3.942 13 N -0.067 5.067 14 C -0.104 4.104 15 C -0.244 4.244 16 C -0.221 4.221 17 C -0.150 4.150 18 N -0.325 5.325 19 C 0.038 3.962 20 C -0.393 4.393 21 H 0.090 0.910 22 C -0.230 4.230 23 N -0.571 5.571 24 Si 0.781 3.219 25 H -0.194 1.194 26 H -0.229 1.229 27 H -0.214 1.214 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.062 0.938 33 H 0.244 0.756 34 H 0.233 0.767 35 H 0.194 0.806 36 H 0.152 0.848 37 H 0.163 0.837 38 H 0.180 0.820 39 H 0.205 0.795 40 H 0.016 0.984 41 H 0.035 0.965 42 H 0.039 0.961 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 7.213 2.920 -10.140 12.782 hybrid contribution 0.652 -0.698 0.243 0.986 sum 7.865 2.222 -9.896 12.835 Atomic orbital electron populations 1.22050 0.94900 1.01686 1.02093 1.20844 0.94396 0.95515 0.84354 0.90845 1.21921 0.79030 1.00420 0.99617 1.45788 1.08739 1.57951 1.22208 1.17093 0.85647 0.78440 0.82824 1.90825 1.69564 1.49703 1.34152 1.24670 0.98203 1.15577 1.04903 1.83915 0.93716 1.51282 1.16719 1.25627 1.06033 1.03621 0.98857 1.19872 0.93692 1.05635 0.99613 1.17394 0.92734 0.96787 0.87324 1.41046 1.28871 1.32608 1.04208 1.21660 0.93896 0.95797 0.99005 1.21101 1.04447 1.06738 0.92074 1.21198 0.99522 1.01514 0.99902 1.22355 1.05066 1.06179 0.81386 1.44066 1.57808 1.09340 1.21322 1.20400 0.93880 0.84732 0.97185 1.19514 1.15597 0.91445 1.12761 0.91028 1.25552 0.98741 0.96542 1.02164 1.70237 1.39666 1.08441 1.38755 0.85450 0.78169 0.78418 0.79883 1.19378 1.22893 1.21428 0.93316 0.92552 0.90552 0.91198 0.93784 0.75624 0.76675 0.80646 0.84846 0.83670 0.82048 0.79531 0.98360 0.96489 0.96114 0.94448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.54 9.18 71.98 0.66 -3.88 16 2 C 0.16 5.74 2.87 45.00 0.13 5.87 16 3 H 0.07 2.64 7.86 -2.39 -0.02 2.62 16 4 C 0.12 4.31 4.97 86.38 0.43 4.74 16 5 N -0.70 -27.56 5.38 -467.59 -2.52 -30.07 16 6 C 0.57 23.03 7.72 86.28 0.67 23.69 16 7 O -0.56 -24.73 13.05 -4.56 -0.06 -24.79 16 8 C -0.31 -10.76 6.43 24.10 0.15 -10.61 16 9 S 0.28 7.77 22.13 -56.49 -1.25 6.52 16 10 C -0.20 -4.10 10.90 66.76 0.73 -3.38 16 11 C -0.16 -3.59 9.97 21.18 0.21 -3.37 16 12 C 0.17 5.17 5.99 37.62 0.23 5.39 16 13 N -0.39 -12.74 2.65 -348.77 -0.92 -13.66 16 14 C 0.02 0.87 8.53 83.17 0.71 1.58 16 15 C -0.22 -6.82 10.86 22.16 0.24 -6.58 16 16 C -0.20 -5.27 10.86 22.16 0.24 -5.03 16 17 C -0.02 -0.65 11.24 83.17 0.94 0.29 16 18 N -0.60 -27.13 2.28 -702.79 -1.61 -28.74 16 19 C 0.18 8.69 8.11 127.77 1.04 9.73 16 20 C -0.26 -12.85 9.32 84.04 0.78 -12.07 16 21 H 0.07 3.41 7.82 -2.91 -0.02 3.38 16 22 C -0.03 -1.69 5.12 84.86 0.43 -1.25 16 23 N -0.93 -49.80 10.65 21.65 0.23 -49.57 16 24 Si 0.95 41.21 29.57 68.60 2.03 43.24 16 25 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 26 H -0.30 -13.57 7.11 99.48 0.71 -12.86 16 27 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 28 H 0.05 1.53 6.66 -2.39 -0.02 1.51 16 29 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 31 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 32 H 0.04 1.78 7.84 -2.39 -0.02 1.76 16 33 H 0.41 16.74 6.99 -92.71 -0.65 16.09 16 34 H 0.22 2.53 8.06 -2.91 -0.02 2.50 16 35 H 0.18 2.98 8.06 -2.91 -0.02 2.96 16 36 H 0.13 5.20 7.45 -2.91 -0.02 5.18 16 37 H 0.15 3.96 8.06 -2.91 -0.02 3.94 16 38 H 0.16 3.28 8.06 -2.91 -0.02 3.26 16 39 H 0.19 3.67 8.06 -2.91 -0.02 3.65 16 40 H 0.00 -0.10 7.41 -2.39 -0.02 -0.12 16 41 H 0.02 0.86 7.23 -2.38 -0.02 0.84 16 42 H 0.02 0.87 6.43 -2.38 -0.02 0.85 16 43 H 0.25 13.10 8.31 -92.71 -0.77 12.33 16 Total: -1.00 -63.95 367.83 3.86 -60.08 By element: Atomic # 1 Polarization: 31.49 SS G_CDS: 0.38 Total: 31.87 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: 7.58 Total: 5.11 kcal Atomic # 7 Polarization: -117.23 SS G_CDS: -4.82 Total: -122.04 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -0.06 Total: -24.79 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.24 kcal Atomic # 16 Polarization: 7.77 SS G_CDS: -1.25 Total: 6.52 kcal Total: -63.95 3.86 -60.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329501168.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.086 kcal (2) G-P(sol) polarization free energy of solvation -63.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds