Wall clock time and date at job start Tue Mar 31 2020 18:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47640 * 2 1 4 4 C 1.52999 * 109.47209 * 119.99976 * 2 1 3 5 5 N 1.46501 * 109.47519 * 174.99819 * 4 2 1 6 6 C 1.34770 * 120.00393 * 180.02562 * 5 4 2 7 7 O 1.21766 * 119.99794 * 359.97438 * 6 5 4 8 8 C 1.46108 * 120.00232 * 180.02562 * 6 5 4 9 9 S 1.75810 * 125.47838 * 0.11833 * 8 6 5 10 10 C 1.70571 * 91.67810 * 180.22931 * 9 8 6 11 11 C 1.33584 * 111.17040 * 359.80919 * 10 9 8 12 12 C 1.37354 * 125.48018 * 179.97438 * 8 6 5 13 13 N 1.39885 * 123.48564 * 359.97438 * 12 8 6 14 14 C 1.36606 * 125.67053 * 309.42026 * 13 12 8 15 15 C 1.34837 * 108.19618 * 179.89127 * 14 13 12 16 16 C 1.40959 * 107.47705 * 0.37040 * 15 14 13 17 17 C 1.34840 * 107.47548 * 359.76758 * 16 15 14 18 18 N 1.46502 * 109.47052 * 239.99504 * 2 1 3 19 19 C 1.46500 * 120.00375 * 300.00515 * 18 2 1 20 20 C 1.36940 * 119.99663 * 119.99913 * 18 2 1 21 21 H 1.08000 * 120.00173 * 23.10420 * 20 18 2 22 22 C 1.38812 * 120.00049 * 203.09969 * 20 18 2 23 23 N 1.31624 * 120.00059 * 13.00477 * 22 20 18 24 24 Si 1.86795 * 120.00215 * 193.00580 * 22 20 18 25 25 H 1.48505 * 109.47120 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47202 * 119.99768 * 24 22 20 27 27 H 1.48503 * 109.47324 * 240.00194 * 24 22 20 28 28 H 1.08998 * 109.47640 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47357 * 300.00320 * 1 2 3 30 30 H 1.09001 * 109.47287 * 59.99774 * 1 2 3 31 31 H 1.09005 * 109.47115 * 54.99395 * 4 2 1 32 32 H 1.09008 * 109.46950 * 295.00073 * 4 2 1 33 33 H 0.96998 * 119.99372 * 359.97438 * 5 4 2 34 34 H 1.07997 * 124.41450 * 179.83225 * 10 9 8 35 35 H 1.07999 * 122.45287 * 180.02562 * 11 10 9 36 36 H 1.08004 * 125.90164 * 0.03430 * 14 13 12 37 37 H 1.08007 * 126.26145 * 180.13475 * 15 14 13 38 38 H 1.08005 * 126.26899 * 179.77085 * 16 15 14 39 39 H 1.08004 * 125.90980 * 180.02562 * 17 16 15 40 40 H 1.08994 * 109.46899 * 95.12106 * 19 18 2 41 41 H 1.09002 * 109.47101 * 215.12808 * 19 18 2 42 42 H 1.09002 * 109.46804 * 335.12344 * 19 18 2 43 43 H 0.96993 * 120.00254 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5000 -0.8264 1.1906 6 6 4.1730 -1.4292 2.1907 7 8 3.5674 -1.8860 3.1432 8 6 5.6291 -1.5336 2.1324 9 16 6.6448 -0.9236 0.8335 10 6 8.0577 -1.4835 1.6077 11 6 7.7681 -2.0826 2.7660 12 6 6.4250 -2.1217 3.0850 13 7 5.9261 -2.7053 4.2544 14 6 5.0567 -2.1182 5.1293 15 6 4.8097 -2.9911 6.1269 16 6 5.5587 -4.1562 5.8651 17 6 6.2320 -3.9547 4.7143 18 7 2.0183 -0.6907 -1.1961 19 6 1.6643 -2.0933 -1.4280 20 6 2.8055 -0.0252 -2.0976 21 1 3.3701 0.8410 -1.7854 22 6 2.8781 -0.4640 -3.4125 23 7 2.0107 -1.3468 -3.8605 24 14 4.2066 0.1984 -4.5463 25 1 5.0488 1.1721 -3.8060 26 1 5.0524 -0.9238 -5.0264 27 1 3.5745 0.8741 -5.7078 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 1.6052 -1.7198 1.2952 32 1 1.7516 -0.1582 2.1370 33 1 3.9823 -0.4629 0.4316 34 1 9.0564 -1.3683 1.2131 35 1 8.5285 -2.5047 3.4062 36 1 4.6376 -1.1272 5.0367 37 1 4.1601 -2.8262 6.9739 38 1 5.5880 -5.0474 6.4746 39 1 6.8978 -4.6593 4.2382 40 1 0.7890 -2.1448 -2.0754 41 1 2.5001 -2.6048 -1.9054 42 1 1.4405 -2.5737 -0.4755 43 1 2.0616 -1.6537 -4.7792 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329501173.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:53 Heat of formation + Delta-G solvation = 84.679364 kcal Electronic energy + Delta-G solvation = -26485.683075 eV Core-core repulsion = 22852.965663 eV Total energy + Delta-G solvation = -3632.717412 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.41177 -39.31562 -37.67992 -36.66713 -33.86666 -32.13542 -31.87063 -29.75046 -29.16904 -28.53571 -26.07766 -25.98887 -24.45875 -23.10500 -21.42010 -21.03760 -20.20931 -19.57398 -18.95713 -18.29376 -17.14726 -16.98029 -15.79455 -15.44595 -15.31919 -14.87933 -14.74949 -14.31820 -13.98137 -13.88080 -13.53841 -13.23836 -12.94738 -12.83616 -12.75364 -12.45441 -12.30731 -12.16455 -12.04785 -11.84057 -11.47410 -11.17519 -11.10871 -10.89834 -10.81238 -10.46786 -10.32669 -9.96407 -9.83835 -9.79202 -9.40946 -9.02089 -8.66725 -8.59608 -8.14195 -7.90966 -6.86203 -5.81248 -3.29607 0.23859 1.21618 1.63486 1.88544 2.66890 3.10413 3.25742 3.29129 3.29402 3.35560 3.38502 3.47632 4.38841 4.68201 4.88767 5.02380 5.18010 5.30617 5.35478 5.39709 5.47082 5.53566 5.61498 5.71421 5.82785 5.86763 5.91015 6.04586 6.14204 6.25557 6.39454 6.41511 6.45064 6.69344 6.77799 6.80229 6.96405 7.13232 7.32197 7.35787 7.59345 7.65807 7.72680 7.84222 8.29484 8.44276 9.13511 9.76626 10.26621 11.22742 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013757 B = 0.003964 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.767415 B = 7062.453054 C = 8502.373694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.157 3.843 3 H 0.069 0.931 4 C 0.108 3.892 5 N -0.698 5.698 6 C 0.577 3.423 7 O -0.527 6.527 8 C -0.272 4.272 9 S 0.275 5.725 10 C -0.231 4.231 11 C -0.151 4.151 12 C 0.172 3.828 13 N -0.386 5.386 14 C 0.054 3.946 15 C -0.214 4.214 16 C -0.189 4.189 17 C -0.022 4.022 18 N -0.594 5.594 19 C 0.164 3.836 20 C -0.264 4.264 21 H 0.069 0.931 22 C 0.008 3.992 23 N -0.900 5.900 24 Si 0.899 3.101 25 H -0.277 1.277 26 H -0.289 1.289 27 H -0.290 1.290 28 H 0.050 0.950 29 H 0.042 0.958 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.407 0.593 34 H 0.176 0.824 35 H 0.149 0.851 36 H 0.156 0.844 37 H 0.134 0.866 38 H 0.135 0.865 39 H 0.157 0.843 40 H 0.031 0.969 41 H 0.039 0.961 42 H -0.001 1.001 43 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.282 -0.014 13.159 16.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.048 3.952 3 H 0.087 0.913 4 C -0.017 4.017 5 N -0.349 5.349 6 C 0.361 3.639 7 O -0.407 6.407 8 C -0.395 4.395 9 S 0.543 5.457 10 C -0.369 4.369 11 C -0.183 4.183 12 C 0.065 3.935 13 N -0.060 5.060 14 C -0.074 4.074 15 C -0.238 4.238 16 C -0.214 4.214 17 C -0.148 4.148 18 N -0.317 5.317 19 C 0.020 3.980 20 C -0.393 4.393 21 H 0.086 0.914 22 C -0.192 4.192 23 N -0.544 5.544 24 Si 0.729 3.271 25 H -0.202 1.202 26 H -0.216 1.216 27 H -0.217 1.217 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.243 0.757 34 H 0.194 0.806 35 H 0.167 0.833 36 H 0.174 0.826 37 H 0.152 0.848 38 H 0.152 0.848 39 H 0.175 0.825 40 H 0.049 0.951 41 H 0.057 0.943 42 H 0.017 0.983 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 9.655 0.497 11.972 15.388 hybrid contribution 1.210 -0.454 0.022 1.293 sum 10.865 0.043 11.995 16.184 Atomic orbital electron populations 1.22174 0.97272 1.01443 1.00645 1.20632 0.92747 0.95489 0.86348 0.91313 1.22018 0.78617 1.01606 0.99506 1.45788 1.08800 1.57862 1.22407 1.16742 0.84402 0.79165 0.83544 1.90877 1.68467 1.48215 1.33098 1.24798 0.98725 1.14918 1.01072 1.83671 0.93045 1.51076 1.17929 1.25153 1.05452 1.06027 1.00306 1.19694 0.94584 1.05076 0.98948 1.16936 0.91190 0.98327 0.87051 1.40880 1.36395 1.12811 1.15947 1.21726 0.95600 0.99980 0.90045 1.20800 1.06264 0.95096 1.01658 1.20845 1.02528 0.99706 0.98344 1.21773 1.07081 0.87377 0.98615 1.44001 1.58238 1.08022 1.21457 1.20725 0.99792 0.83299 0.94199 1.19213 1.19040 1.11762 0.89312 0.91356 1.25027 0.98215 0.99358 0.96561 1.70077 1.34937 1.34016 1.15419 0.86284 0.81534 0.78254 0.81066 1.20166 1.21562 1.21702 0.93124 0.93934 0.92117 0.91794 0.92131 0.75664 0.80615 0.83325 0.82625 0.84786 0.84761 0.82522 0.95105 0.94271 0.98281 0.93726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 9.19 37.15 0.34 -2.36 16 2 C 0.16 2.94 2.87 -67.93 -0.19 2.75 16 3 H 0.07 1.27 7.86 -51.93 -0.41 0.86 16 4 C 0.11 1.89 4.93 -4.04 -0.02 1.87 16 5 N -0.70 -12.14 5.38 -61.79 -0.33 -12.47 16 6 C 0.58 10.12 7.72 -13.11 -0.10 10.02 16 7 O -0.53 -10.39 13.05 5.13 0.07 -10.32 16 8 C -0.27 -4.10 6.43 -36.75 -0.24 -4.34 16 9 S 0.27 3.31 22.13 -107.50 -2.38 0.93 16 10 C -0.23 -2.24 10.90 29.10 0.32 -1.92 16 11 C -0.15 -1.66 9.97 -41.26 -0.41 -2.08 16 12 C 0.17 2.45 5.99 -84.56 -0.51 1.94 16 13 N -0.39 -5.81 2.65 -61.59 -0.16 -5.98 16 14 C 0.05 0.84 8.53 -16.63 -0.14 0.70 16 15 C -0.21 -3.09 10.86 -39.76 -0.43 -3.52 16 16 C -0.19 -2.56 10.86 -39.76 -0.43 -2.99 16 17 C -0.02 -0.30 11.24 -16.63 -0.19 -0.49 16 18 N -0.59 -13.52 2.28 -173.49 -0.40 -13.92 16 19 C 0.16 3.89 8.01 59.85 0.48 4.37 16 20 C -0.26 -6.55 9.31 -15.06 -0.14 -6.69 16 21 H 0.07 1.63 7.82 -52.49 -0.41 1.21 16 22 C 0.01 0.20 5.10 -17.43 -0.09 0.11 16 23 N -0.90 -25.01 10.72 55.49 0.59 -24.41 16 24 Si 0.90 20.36 29.57 -169.99 -5.03 15.33 16 25 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 26 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 27 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 28 H 0.05 0.89 7.67 -51.93 -0.40 0.50 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.06 1.21 6.87 -51.93 -0.36 0.86 16 32 H 0.06 0.98 8.14 -51.92 -0.42 0.56 16 33 H 0.41 7.12 6.99 -40.82 -0.29 6.84 16 34 H 0.18 1.15 8.06 -52.49 -0.42 0.73 16 35 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 36 H 0.16 2.39 7.45 -52.48 -0.39 2.00 16 37 H 0.13 1.67 8.06 -52.48 -0.42 1.25 16 38 H 0.13 1.48 8.06 -52.48 -0.42 1.06 16 39 H 0.16 1.73 8.06 -52.48 -0.42 1.31 16 40 H 0.03 0.80 7.34 -51.93 -0.38 0.42 16 41 H 0.04 1.00 7.35 -51.93 -0.38 0.62 16 42 H 0.00 -0.03 6.53 -51.93 -0.34 -0.37 16 43 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 367.93 15.07 5.54 5.54 Total: -1.00 -30.18 367.93 -9.72 -39.89 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -5.87 Total: 8.02 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: -1.75 Total: -2.62 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: -0.30 Total: -56.78 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.07 Total: -10.32 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.03 Total: 15.33 kcal Atomic # 16 Polarization: 3.31 SS G_CDS: -2.38 Total: 0.93 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.18 -9.72 -39.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329501173.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.572 kcal (2) G-P(sol) polarization free energy of solvation -30.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds