Wall clock time and date at job start Tue Mar 31 2020 18:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47640 * 2 1 4 4 C 1.52999 * 109.47209 * 119.99976 * 2 1 3 5 5 N 1.46501 * 109.47519 * 174.99819 * 4 2 1 6 6 C 1.34770 * 120.00393 * 180.02562 * 5 4 2 7 7 O 1.21766 * 119.99794 * 359.97438 * 6 5 4 8 8 C 1.46108 * 120.00232 * 180.02562 * 6 5 4 9 9 S 1.75810 * 125.47838 * 0.11833 * 8 6 5 10 10 C 1.70571 * 91.67810 * 180.22931 * 9 8 6 11 11 C 1.33584 * 111.17040 * 359.80919 * 10 9 8 12 12 C 1.37354 * 125.48018 * 179.97438 * 8 6 5 13 13 N 1.39885 * 123.48564 * 359.97438 * 12 8 6 14 14 C 1.36606 * 125.67053 * 309.42026 * 13 12 8 15 15 C 1.34837 * 108.19618 * 179.89127 * 14 13 12 16 16 C 1.40959 * 107.47705 * 0.37040 * 15 14 13 17 17 C 1.34840 * 107.47548 * 359.76758 * 16 15 14 18 18 N 1.46502 * 109.47052 * 239.99504 * 2 1 3 19 19 C 1.46500 * 120.00375 * 300.00515 * 18 2 1 20 20 C 1.36940 * 119.99663 * 119.99913 * 18 2 1 21 21 H 1.08000 * 120.00173 * 23.10420 * 20 18 2 22 22 C 1.38812 * 120.00049 * 203.09969 * 20 18 2 23 23 N 1.31624 * 120.00059 * 13.00477 * 22 20 18 24 24 Si 1.86795 * 120.00215 * 193.00580 * 22 20 18 25 25 H 1.48505 * 109.47120 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47202 * 119.99768 * 24 22 20 27 27 H 1.48503 * 109.47324 * 240.00194 * 24 22 20 28 28 H 1.08998 * 109.47640 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47357 * 300.00320 * 1 2 3 30 30 H 1.09001 * 109.47287 * 59.99774 * 1 2 3 31 31 H 1.09005 * 109.47115 * 54.99395 * 4 2 1 32 32 H 1.09008 * 109.46950 * 295.00073 * 4 2 1 33 33 H 0.96998 * 119.99372 * 359.97438 * 5 4 2 34 34 H 1.07997 * 124.41450 * 179.83225 * 10 9 8 35 35 H 1.07999 * 122.45287 * 180.02562 * 11 10 9 36 36 H 1.08004 * 125.90164 * 0.03430 * 14 13 12 37 37 H 1.08007 * 126.26145 * 180.13475 * 15 14 13 38 38 H 1.08005 * 126.26899 * 179.77085 * 16 15 14 39 39 H 1.08004 * 125.90980 * 180.02562 * 17 16 15 40 40 H 1.08994 * 109.46899 * 95.12106 * 19 18 2 41 41 H 1.09002 * 109.47101 * 215.12808 * 19 18 2 42 42 H 1.09002 * 109.46804 * 335.12344 * 19 18 2 43 43 H 0.96993 * 120.00254 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5000 -0.8264 1.1906 6 6 4.1730 -1.4292 2.1907 7 8 3.5674 -1.8860 3.1432 8 6 5.6291 -1.5336 2.1324 9 16 6.6448 -0.9236 0.8335 10 6 8.0577 -1.4835 1.6077 11 6 7.7681 -2.0826 2.7660 12 6 6.4250 -2.1217 3.0850 13 7 5.9261 -2.7053 4.2544 14 6 5.0567 -2.1182 5.1293 15 6 4.8097 -2.9911 6.1269 16 6 5.5587 -4.1562 5.8651 17 6 6.2320 -3.9547 4.7143 18 7 2.0183 -0.6907 -1.1961 19 6 1.6643 -2.0933 -1.4280 20 6 2.8055 -0.0252 -2.0976 21 1 3.3701 0.8410 -1.7854 22 6 2.8781 -0.4640 -3.4125 23 7 2.0107 -1.3468 -3.8605 24 14 4.2066 0.1984 -4.5463 25 1 5.0488 1.1721 -3.8060 26 1 5.0524 -0.9238 -5.0264 27 1 3.5745 0.8741 -5.7078 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 1.6052 -1.7198 1.2952 32 1 1.7516 -0.1582 2.1370 33 1 3.9823 -0.4629 0.4316 34 1 9.0564 -1.3683 1.2131 35 1 8.5285 -2.5047 3.4062 36 1 4.6376 -1.1272 5.0367 37 1 4.1601 -2.8262 6.9739 38 1 5.5880 -5.0474 6.4746 39 1 6.8978 -4.6593 4.2382 40 1 0.7890 -2.1448 -2.0754 41 1 2.5001 -2.6048 -1.9054 42 1 1.4405 -2.5737 -0.4755 43 1 2.0616 -1.6537 -4.7792 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329501173.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:52 Heat of formation + Delta-G solvation = 68.663453 kcal Electronic energy + Delta-G solvation = -26486.377577 eV Core-core repulsion = 22852.965663 eV Total energy + Delta-G solvation = -3633.411914 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.46960 -40.64088 -38.78071 -38.20073 -35.46469 -33.80810 -32.87198 -31.33993 -30.46457 -29.60556 -28.03218 -27.27057 -25.55326 -24.88941 -22.47737 -22.19880 -21.26841 -21.13101 -20.00518 -19.57899 -18.83496 -18.21547 -17.17264 -16.98211 -16.61416 -16.26400 -15.76446 -15.71808 -15.35333 -15.06040 -14.74668 -14.61615 -14.45430 -14.21980 -14.08069 -13.78465 -13.47289 -13.38980 -13.16292 -13.08055 -12.93389 -12.84584 -12.68388 -12.55174 -12.28488 -12.07466 -12.05461 -11.79107 -11.52646 -11.15002 -10.62896 -10.40951 -10.16773 -9.81712 -9.16325 -8.99896 -8.78455 -7.78243 -5.27767 -0.76991 0.24648 0.74214 0.96526 1.49715 1.52147 1.59394 1.61074 2.03456 2.06873 2.18295 2.20945 2.53703 3.37136 3.60976 3.72984 3.92556 3.96969 4.04275 4.28669 4.32803 4.35650 4.53218 4.57006 4.67067 4.68581 4.72967 4.77024 4.88009 4.94208 4.99835 5.01630 5.20434 5.30244 5.36829 5.38487 5.40001 5.50951 5.68721 5.72471 6.07740 6.28998 6.35177 6.48068 6.54772 7.09764 7.17799 7.87907 8.34755 9.25324 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013757 B = 0.003964 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.767415 B = 7062.453054 C = 8502.373694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.156 3.844 3 H 0.077 0.923 4 C 0.119 3.881 5 N -0.701 5.701 6 C 0.575 3.425 7 O -0.557 6.557 8 C -0.314 4.314 9 S 0.278 5.722 10 C -0.197 4.197 11 C -0.160 4.160 12 C 0.170 3.830 13 N -0.395 5.395 14 C 0.030 3.970 15 C -0.223 4.223 16 C -0.199 4.199 17 C -0.028 4.028 18 N -0.603 5.603 19 C 0.186 3.814 20 C -0.258 4.258 21 H 0.082 0.918 22 C -0.049 4.049 23 N -0.938 5.938 24 Si 0.958 3.042 25 H -0.254 1.254 26 H -0.295 1.295 27 H -0.301 1.301 28 H 0.042 0.958 29 H 0.077 0.923 30 H 0.043 0.957 31 H 0.047 0.953 32 H 0.077 0.923 33 H 0.406 0.594 34 H 0.217 0.783 35 H 0.174 0.826 36 H 0.146 0.854 37 H 0.146 0.854 38 H 0.158 0.842 39 H 0.183 0.817 40 H 0.003 0.997 41 H 0.011 0.989 42 H 0.015 0.985 43 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.737 0.527 14.041 18.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.049 3.951 3 H 0.095 0.905 4 C -0.007 4.007 5 N -0.351 5.351 6 C 0.362 3.638 7 O -0.439 6.439 8 C -0.436 4.436 9 S 0.546 5.454 10 C -0.336 4.336 11 C -0.190 4.190 12 C 0.061 3.939 13 N -0.070 5.070 14 C -0.098 4.098 15 C -0.247 4.247 16 C -0.223 4.223 17 C -0.154 4.154 18 N -0.326 5.326 19 C 0.041 3.959 20 C -0.387 4.387 21 H 0.099 0.901 22 C -0.244 4.244 23 N -0.585 5.585 24 Si 0.787 3.213 25 H -0.178 1.178 26 H -0.222 1.222 27 H -0.228 1.228 28 H 0.061 0.939 29 H 0.095 0.905 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.243 0.757 34 H 0.234 0.766 35 H 0.191 0.809 36 H 0.163 0.837 37 H 0.164 0.836 38 H 0.175 0.825 39 H 0.200 0.800 40 H 0.022 0.978 41 H 0.030 0.970 42 H 0.033 0.967 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 12.121 1.073 12.886 17.723 hybrid contribution 0.482 -0.613 -0.161 0.796 sum 12.603 0.460 12.725 17.915 Atomic orbital electron populations 1.22060 0.95938 1.01230 1.01485 1.20795 0.93712 0.95548 0.85057 0.90527 1.21832 0.78948 1.00603 0.99276 1.45783 1.08604 1.58172 1.22523 1.17082 0.85633 0.78295 0.82831 1.90850 1.69552 1.49435 1.34028 1.24628 0.97749 1.17917 1.03325 1.83640 0.93710 1.50953 1.17122 1.25615 1.06119 1.03008 0.98828 1.19886 0.93539 1.05723 0.99862 1.17402 0.92482 0.97601 0.86428 1.41069 1.36411 1.13316 1.16162 1.21745 0.96802 1.00173 0.91086 1.21120 1.06365 0.95388 1.01819 1.21201 1.02193 1.00168 0.98760 1.22302 1.07173 0.87216 0.98693 1.44137 1.58435 1.07813 1.22222 1.20347 0.97403 0.84140 0.94010 1.19606 1.18471 1.11289 0.89375 0.90058 1.25752 1.00276 1.00206 0.98204 1.70249 1.36952 1.36031 1.15246 0.85327 0.79304 0.77700 0.78946 1.17786 1.22215 1.22828 0.93897 0.90457 0.93814 0.93488 0.90461 0.75741 0.76598 0.80907 0.83678 0.83587 0.82452 0.80013 0.97849 0.96981 0.96650 0.94595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.98 9.19 71.98 0.66 -4.32 16 2 C 0.16 5.74 2.87 44.99 0.13 5.87 16 3 H 0.08 2.71 7.86 -2.39 -0.02 2.69 16 4 C 0.12 4.10 4.93 86.38 0.43 4.52 16 5 N -0.70 -24.24 5.38 -467.60 -2.52 -26.76 16 6 C 0.57 20.30 7.72 86.29 0.67 20.97 16 7 O -0.56 -22.37 13.05 -4.56 -0.06 -22.43 16 8 C -0.31 -9.26 6.43 24.10 0.15 -9.11 16 9 S 0.28 6.14 22.13 -56.49 -1.25 4.89 16 10 C -0.20 -3.08 10.90 66.76 0.73 -2.35 16 11 C -0.16 -3.03 9.97 21.18 0.21 -2.82 16 12 C 0.17 4.59 5.99 37.61 0.23 4.82 16 13 N -0.40 -11.60 2.65 -348.76 -0.92 -12.53 16 14 C 0.03 0.93 8.53 83.17 0.71 1.64 16 15 C -0.22 -6.35 10.86 22.16 0.24 -6.11 16 16 C -0.20 -5.09 10.86 22.16 0.24 -4.85 16 17 C -0.03 -0.72 11.24 83.17 0.94 0.22 16 18 N -0.60 -27.47 2.28 -702.79 -1.61 -29.08 16 19 C 0.19 9.03 8.01 127.77 1.02 10.05 16 20 C -0.26 -12.66 9.31 84.03 0.78 -11.87 16 21 H 0.08 3.73 7.82 -2.91 -0.02 3.71 16 22 C -0.05 -2.56 5.10 84.86 0.43 -2.13 16 23 N -0.94 -53.43 10.72 21.65 0.23 -53.20 16 24 Si 0.96 41.73 29.57 68.60 2.03 43.76 16 25 H -0.25 -10.00 7.11 99.48 0.71 -9.30 16 26 H -0.30 -13.03 7.11 99.48 0.71 -12.32 16 27 H -0.30 -13.52 7.11 99.48 0.71 -12.82 16 28 H 0.04 1.50 7.67 -2.39 -0.02 1.48 16 29 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.05 1.78 6.87 -2.38 -0.02 1.77 16 32 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 33 H 0.41 14.04 6.99 -92.71 -0.65 13.39 16 34 H 0.22 1.60 8.06 -2.91 -0.02 1.58 16 35 H 0.17 2.43 8.06 -2.91 -0.02 2.41 16 36 H 0.15 4.67 7.45 -2.91 -0.02 4.65 16 37 H 0.15 3.60 8.06 -2.91 -0.02 3.57 16 38 H 0.16 3.14 8.06 -2.91 -0.02 3.12 16 39 H 0.18 3.54 8.06 -2.91 -0.02 3.52 16 40 H 0.00 0.17 7.34 -2.39 -0.02 0.16 16 41 H 0.01 0.61 7.35 -2.39 -0.02 0.60 16 42 H 0.02 0.67 6.53 -2.39 -0.02 0.66 16 43 H 0.24 13.72 8.31 -92.71 -0.77 12.95 16 Total: -1.00 -66.81 367.93 3.85 -62.96 By element: Atomic # 1 Polarization: 27.47 SS G_CDS: 0.38 Total: 27.85 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: 7.57 Total: 4.53 kcal Atomic # 7 Polarization: -116.74 SS G_CDS: -4.81 Total: -121.56 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -0.06 Total: -22.43 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Atomic # 16 Polarization: 6.14 SS G_CDS: -1.25 Total: 4.89 kcal Total: -66.81 3.85 -62.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329501173.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.622 kcal (2) G-P(sol) polarization free energy of solvation -66.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds