Wall clock time and date at job start Tue Mar 31 2020 19:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46495 * 109.47076 * 2 1 4 4 C 1.36704 * 120.00405 * 272.95739 * 3 2 1 5 5 H 1.08003 * 120.00143 * 132.20237 * 4 3 2 6 6 C 1.39131 * 119.99645 * 312.21136 * 4 3 2 7 7 N 1.31310 * 120.00375 * 357.58734 * 6 4 3 8 8 Si 1.86801 * 119.99715 * 177.58830 * 6 4 3 9 9 H 1.48496 * 109.47436 * 359.97438 * 8 6 4 10 10 H 1.48511 * 109.46827 * 119.99935 * 8 6 4 11 11 H 1.48495 * 109.47175 * 239.99591 * 8 6 4 12 12 C 1.34781 * 120.00006 * 92.96446 * 3 2 1 13 13 O 1.21729 * 119.99994 * 4.13360 * 12 3 2 14 14 C 1.46493 * 119.99776 * 184.14171 * 12 3 2 15 15 N 1.29884 * 119.56139 * 354.53180 * 14 12 3 16 16 N 1.39864 * 121.10873 * 180.18006 * 15 14 12 17 17 C 1.40039 * 119.79000 * 199.09004 * 16 15 14 18 18 C 1.38891 * 120.04660 * 230.90726 * 17 16 15 19 19 C 1.38090 * 119.95440 * 179.79019 * 18 17 16 20 20 C 1.38494 * 120.04373 * 0.48550 * 19 18 17 21 21 F 1.35104 * 119.95477 * 179.71867 * 20 19 18 22 22 C 1.38497 * 120.09692 * 359.74783 * 20 19 18 23 23 C 1.38092 * 120.04482 * 0.02562 * 22 20 19 24 24 C 1.34726 * 120.41767 * 19.11746 * 16 15 14 25 25 O 1.21253 * 120.11161 * 179.76779 * 24 16 15 26 26 C 1.50765 * 119.77624 * 359.76551 * 24 16 15 27 27 C 1.50551 * 119.55636 * 174.56113 * 14 12 3 28 28 H 1.09000 * 109.47443 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.47349 * 300.00172 * 1 2 3 30 30 H 1.09004 * 109.47153 * 59.99498 * 1 2 3 31 31 H 1.08996 * 109.47079 * 240.00058 * 2 1 3 32 32 H 1.09000 * 109.47189 * 119.99985 * 2 1 3 33 33 H 0.96996 * 120.00534 * 180.02562 * 7 6 4 34 34 H 1.07997 * 120.02188 * 0.02562 * 18 17 16 35 35 H 1.08001 * 119.97586 * 180.22860 * 19 18 17 36 36 H 1.08001 * 119.97919 * 179.97438 * 22 20 19 37 37 H 1.07998 * 120.02374 * 180.02562 * 23 22 20 38 38 H 1.09005 * 109.50838 * 206.77406 * 26 24 16 39 39 H 1.09002 * 109.51411 * 86.63040 * 26 24 16 40 40 H 1.08998 * 109.45434 * 25.73691 * 27 14 12 41 41 H 1.09003 * 109.42327 * 265.80083 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1885 2.0460 -1.1823 5 1 1.8001 3.0469 -1.2998 6 6 2.8621 1.4332 -2.2342 7 7 3.3755 0.2351 -2.0759 8 14 3.0362 2.3151 -3.8717 9 1 2.3744 3.6420 -3.7922 10 1 4.4763 2.4975 -4.1850 11 1 2.3958 1.5064 -4.9399 12 6 2.2998 1.9964 1.1657 13 8 2.2206 1.3814 2.2132 14 6 2.7010 3.4053 1.1720 15 7 2.8861 4.0240 0.0451 16 7 3.2729 5.3677 0.0134 17 6 3.0829 6.1190 -1.1530 18 6 4.1363 6.8476 -1.6902 19 6 3.9480 7.5844 -2.8429 20 6 2.7071 7.6052 -3.4575 21 9 2.5233 8.3312 -4.5820 22 6 1.6540 6.8833 -2.9208 23 6 1.8393 6.1415 -1.7709 24 6 3.8276 5.9436 1.0977 25 8 4.1648 7.1078 1.0627 26 6 4.0277 5.1356 2.3547 27 6 2.8937 4.1167 2.4848 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8454 -0.1920 -2.8091 34 1 5.1030 6.8348 -1.2090 35 1 4.7678 8.1481 -3.2630 36 1 0.6870 6.9012 -3.4015 37 1 1.0180 5.5784 -1.3529 38 1 4.0215 5.7996 3.2191 39 1 4.9828 4.6128 2.3033 40 1 3.1452 3.3905 3.2577 41 1 1.9724 4.6318 2.7567 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338300822.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:33 Heat of formation + Delta-G solvation = -21.729182 kcal Electronic energy + Delta-G solvation = -29384.734025 eV Core-core repulsion = 25181.189216 eV Total energy + Delta-G solvation = -4203.544809 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -48.81779 -40.81715 -38.98716 -38.33551 -36.64176 -35.21656 -33.78233 -31.96375 -31.47755 -31.11109 -29.75929 -28.89442 -25.54257 -24.99013 -23.92916 -23.04098 -22.48290 -21.44930 -19.85858 -18.64341 -17.72130 -17.41750 -17.17072 -16.58061 -16.35648 -15.51497 -15.46448 -15.34067 -14.97391 -14.58470 -14.32462 -14.12770 -13.86057 -13.53170 -13.34904 -13.19406 -13.08847 -12.77524 -12.62995 -12.53571 -12.15890 -11.92969 -11.79002 -11.69582 -11.34354 -11.23557 -11.07660 -10.94405 -10.86097 -10.37860 -10.24425 -9.98456 -9.43354 -9.21502 -9.14558 -9.04456 -8.68208 -7.92923 -7.53682 -6.49491 -4.28251 1.08836 1.30278 1.57467 2.49297 2.69193 3.08485 3.17817 3.22405 3.62325 3.93035 4.11455 4.18022 4.31892 4.50297 4.76636 4.81496 4.88120 4.89344 5.08650 5.19274 5.27943 5.37524 5.48559 5.53775 5.81244 5.85126 5.93685 6.03972 6.15011 6.15911 6.20425 6.28190 6.30355 6.37815 6.51729 6.61845 6.73217 6.96046 6.97753 7.24648 7.47372 7.81286 7.88573 8.26084 8.37366 8.89690 9.21583 9.66872 10.47500 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010523 B = 0.005749 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2660.130589 B = 4869.152087 C = 6718.525551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.097 3.903 3 N -0.400 5.400 4 C -0.306 4.306 5 H 0.114 0.886 6 C 0.052 3.948 7 N -0.858 5.858 8 Si 0.914 3.086 9 H -0.258 1.258 10 H -0.279 1.279 11 H -0.280 1.280 12 C 0.507 3.493 13 O -0.599 6.599 14 C 0.088 3.912 15 N -0.169 5.169 16 N -0.429 5.429 17 C 0.166 3.834 18 C -0.079 4.079 19 C -0.142 4.142 20 C 0.086 3.914 21 F -0.142 7.142 22 C -0.140 4.140 23 C -0.081 4.081 24 C 0.492 3.508 25 O -0.526 6.526 26 C -0.137 4.137 27 C -0.103 4.103 28 H 0.050 0.950 29 H 0.042 0.958 30 H 0.054 0.946 31 H 0.115 0.885 32 H 0.060 0.940 33 H 0.273 0.727 34 H 0.134 0.866 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.112 0.888 39 H 0.106 0.894 40 H 0.112 0.888 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.483 8.184 0.543 8.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.026 4.026 3 N -0.116 5.116 4 C -0.437 4.437 5 H 0.131 0.869 6 C -0.156 4.156 7 N -0.494 5.494 8 Si 0.740 3.260 9 H -0.181 1.181 10 H -0.205 1.205 11 H -0.206 1.206 12 C 0.295 3.705 13 O -0.485 6.485 14 C -0.103 4.103 15 N 0.022 4.978 16 N -0.240 5.240 17 C 0.075 3.925 18 C -0.100 4.100 19 C -0.161 4.161 20 C 0.067 3.933 21 F -0.121 7.121 22 C -0.159 4.159 23 C -0.101 4.101 24 C 0.281 3.719 25 O -0.400 6.400 26 C -0.178 4.178 27 C -0.143 4.143 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.133 0.867 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.152 0.848 35 H 0.156 0.844 36 H 0.157 0.843 37 H 0.156 0.844 38 H 0.131 0.869 39 H 0.124 0.876 40 H 0.130 0.870 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.217 8.388 0.006 8.476 hybrid contribution 0.355 0.557 -0.356 0.751 sum -0.861 8.946 -0.350 8.994 Atomic orbital electron populations 1.22047 0.97785 1.00369 1.01181 1.21665 0.92028 0.84435 1.04426 1.43502 1.51349 1.11955 1.04796 1.19992 1.34007 1.00690 0.89038 0.86884 1.25568 0.94194 0.95556 1.00269 1.69673 1.32938 1.13650 1.33149 0.86031 0.78674 0.80301 0.81028 1.18116 1.20467 1.20565 1.17596 0.83244 0.84410 0.85260 1.90697 1.60301 1.65314 1.32140 1.25115 0.97158 0.96766 0.91255 1.76954 1.10339 0.88000 1.22522 1.47123 1.57288 1.08974 1.10616 1.17302 0.93390 0.94304 0.87515 1.20894 0.98403 0.96590 0.94104 1.20903 0.96385 1.02188 0.96627 1.17677 0.94990 0.95532 0.85129 1.91477 1.95957 1.75577 1.49108 1.20952 0.99080 0.98639 0.97250 1.20947 0.96172 0.97742 0.95251 1.21494 0.76904 0.87846 0.85606 1.90698 1.48993 1.16592 1.83687 1.21814 1.01582 0.98589 0.95769 1.20837 0.98804 0.97804 0.96902 0.93114 0.93870 0.92706 0.86731 0.92135 0.91641 0.84807 0.84392 0.84273 0.84368 0.86926 0.87586 0.86960 0.89090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 10.23 37.16 0.38 -2.51 16 2 C 0.10 2.13 5.80 -4.05 -0.02 2.11 16 3 N -0.40 -9.28 2.47 -116.38 -0.29 -9.57 16 4 C -0.31 -7.15 7.44 -15.05 -0.11 -7.26 16 5 H 0.11 2.60 6.00 -52.48 -0.32 2.29 16 6 C 0.05 1.23 5.31 -17.44 -0.09 1.14 16 7 N -0.86 -21.24 11.11 55.51 0.62 -20.63 16 8 Si 0.91 19.15 29.55 -169.99 -5.02 14.13 16 9 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 10 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 11 H -0.28 -5.80 7.11 56.52 0.40 -5.39 16 12 C 0.51 11.42 7.58 -12.93 -0.10 11.33 16 13 O -0.60 -14.32 15.72 5.16 0.08 -14.24 16 14 C 0.09 1.70 6.70 -80.16 -0.54 1.16 16 15 N -0.17 -3.33 7.16 34.87 0.25 -3.08 16 16 N -0.43 -7.75 3.56 -9.82 -0.04 -7.78 16 17 C 0.17 2.89 5.59 -83.63 -0.47 2.43 16 18 C -0.08 -1.27 8.73 -39.39 -0.34 -1.61 16 19 C -0.14 -2.00 10.02 -39.54 -0.40 -2.40 16 20 C 0.09 1.25 7.30 -39.39 -0.29 0.97 16 21 F -0.14 -2.01 17.27 2.25 0.04 -1.98 16 22 C -0.14 -2.00 10.02 -39.54 -0.40 -2.40 16 23 C -0.08 -1.29 9.76 -39.40 -0.38 -1.68 16 24 C 0.49 8.32 7.32 -10.98 -0.08 8.24 16 25 O -0.53 -9.75 15.81 5.58 0.09 -9.66 16 26 C -0.14 -1.87 6.20 -27.85 -0.17 -2.04 16 27 C -0.10 -1.54 5.88 -27.95 -0.16 -1.71 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.04 0.80 8.14 -51.92 -0.42 0.38 16 30 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.12 2.68 5.53 -51.93 -0.29 2.39 16 32 H 0.06 1.36 7.28 -51.93 -0.38 0.98 16 33 H 0.27 6.42 8.31 -40.82 -0.34 6.08 16 34 H 0.13 2.08 7.54 -52.49 -0.40 1.68 16 35 H 0.14 1.58 8.06 -52.49 -0.42 1.16 16 36 H 0.14 1.64 8.06 -52.49 -0.42 1.22 16 37 H 0.14 2.12 8.06 -52.49 -0.42 1.70 16 38 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.11 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.11 1.64 7.48 -51.93 -0.39 1.25 16 41 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 353.03 15.07 5.32 5.32 Total: -1.00 -28.10 353.03 -6.83 -34.93 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -4.70 Total: 6.78 kcal Atomic # 6 Polarization: 8.94 SS G_CDS: -3.18 Total: 5.77 kcal Atomic # 7 Polarization: -41.60 SS G_CDS: 0.54 Total: -41.06 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: 0.17 Total: -23.90 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.98 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.02 Total: 14.13 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -28.10 -6.83 -34.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338300822.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.201 kcal (2) G-P(sol) polarization free energy of solvation -28.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds