Wall clock time and date at job start Tue Mar 31 2020 19:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46495 * 109.47076 * 2 1 4 4 C 1.36704 * 120.00405 * 272.95739 * 3 2 1 5 5 H 1.08003 * 120.00143 * 132.20237 * 4 3 2 6 6 C 1.39131 * 119.99645 * 312.21136 * 4 3 2 7 7 N 1.31310 * 120.00375 * 357.58734 * 6 4 3 8 8 Si 1.86801 * 119.99715 * 177.58830 * 6 4 3 9 9 H 1.48496 * 109.47436 * 359.97438 * 8 6 4 10 10 H 1.48511 * 109.46827 * 119.99935 * 8 6 4 11 11 H 1.48495 * 109.47175 * 239.99591 * 8 6 4 12 12 C 1.34781 * 120.00006 * 92.96446 * 3 2 1 13 13 O 1.21729 * 119.99994 * 4.13360 * 12 3 2 14 14 C 1.46493 * 119.99776 * 184.14171 * 12 3 2 15 15 N 1.29884 * 119.56139 * 354.53180 * 14 12 3 16 16 N 1.39864 * 121.10873 * 180.18006 * 15 14 12 17 17 C 1.40039 * 119.79000 * 199.09004 * 16 15 14 18 18 C 1.38891 * 120.04660 * 230.90726 * 17 16 15 19 19 C 1.38090 * 119.95440 * 179.79019 * 18 17 16 20 20 C 1.38494 * 120.04373 * 0.48550 * 19 18 17 21 21 F 1.35104 * 119.95477 * 179.71867 * 20 19 18 22 22 C 1.38497 * 120.09692 * 359.74783 * 20 19 18 23 23 C 1.38092 * 120.04482 * 0.02562 * 22 20 19 24 24 C 1.34726 * 120.41767 * 19.11746 * 16 15 14 25 25 O 1.21253 * 120.11161 * 179.76779 * 24 16 15 26 26 C 1.50765 * 119.77624 * 359.76551 * 24 16 15 27 27 C 1.50551 * 119.55636 * 174.56113 * 14 12 3 28 28 H 1.09000 * 109.47443 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.47349 * 300.00172 * 1 2 3 30 30 H 1.09004 * 109.47153 * 59.99498 * 1 2 3 31 31 H 1.08996 * 109.47079 * 240.00058 * 2 1 3 32 32 H 1.09000 * 109.47189 * 119.99985 * 2 1 3 33 33 H 0.96996 * 120.00534 * 180.02562 * 7 6 4 34 34 H 1.07997 * 120.02188 * 0.02562 * 18 17 16 35 35 H 1.08001 * 119.97586 * 180.22860 * 19 18 17 36 36 H 1.08001 * 119.97919 * 179.97438 * 22 20 19 37 37 H 1.07998 * 120.02374 * 180.02562 * 23 22 20 38 38 H 1.09005 * 109.50838 * 206.77406 * 26 24 16 39 39 H 1.09002 * 109.51411 * 86.63040 * 26 24 16 40 40 H 1.08998 * 109.45434 * 25.73691 * 27 14 12 41 41 H 1.09003 * 109.42327 * 265.80083 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1885 2.0460 -1.1823 5 1 1.8001 3.0469 -1.2998 6 6 2.8621 1.4332 -2.2342 7 7 3.3755 0.2351 -2.0759 8 14 3.0362 2.3151 -3.8717 9 1 2.3744 3.6420 -3.7922 10 1 4.4763 2.4975 -4.1850 11 1 2.3958 1.5064 -4.9399 12 6 2.2998 1.9964 1.1657 13 8 2.2206 1.3814 2.2132 14 6 2.7010 3.4053 1.1720 15 7 2.8861 4.0240 0.0451 16 7 3.2729 5.3677 0.0134 17 6 3.0829 6.1190 -1.1530 18 6 4.1363 6.8476 -1.6902 19 6 3.9480 7.5844 -2.8429 20 6 2.7071 7.6052 -3.4575 21 9 2.5233 8.3312 -4.5820 22 6 1.6540 6.8833 -2.9208 23 6 1.8393 6.1415 -1.7709 24 6 3.8276 5.9436 1.0977 25 8 4.1648 7.1078 1.0627 26 6 4.0277 5.1356 2.3547 27 6 2.8937 4.1167 2.4848 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8454 -0.1920 -2.8091 34 1 5.1030 6.8348 -1.2090 35 1 4.7678 8.1481 -3.2630 36 1 0.6870 6.9012 -3.4015 37 1 1.0180 5.5784 -1.3529 38 1 4.0215 5.7996 3.2191 39 1 4.9828 4.6128 2.3033 40 1 3.1452 3.3905 3.2577 41 1 1.9724 4.6318 2.7567 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338300822.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:32 Heat of formation + Delta-G solvation = -35.562304 kcal Electronic energy + Delta-G solvation = -29385.333874 eV Core-core repulsion = 25181.189216 eV Total energy + Delta-G solvation = -4204.144658 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.94350 -42.16017 -40.63118 -39.58897 -38.10519 -36.97837 -35.07940 -33.73634 -32.87265 -32.27746 -31.27979 -30.21948 -27.12473 -26.51182 -25.35576 -24.33536 -23.70674 -22.90472 -21.48261 -20.16757 -19.08852 -18.65688 -18.48625 -18.16162 -17.61419 -16.96543 -16.71989 -16.63791 -16.57753 -16.22849 -15.76938 -15.49426 -15.24528 -14.93809 -14.66633 -14.42230 -14.37803 -14.33936 -13.96156 -13.75820 -13.61384 -13.37723 -13.25906 -13.18672 -12.94461 -12.73495 -12.54579 -12.46223 -12.10151 -12.01992 -11.69028 -11.65655 -11.06737 -10.88306 -10.50060 -10.32182 -10.19933 -9.45044 -9.10953 -8.27368 -6.11607 -0.13664 0.08717 0.14533 1.13923 1.32329 1.43429 1.47161 1.56640 2.25040 2.36789 2.47919 2.67025 3.04793 3.16530 3.23486 3.58083 3.67588 3.78508 3.82139 3.99786 4.11563 4.12649 4.24295 4.37360 4.43038 4.58012 4.68697 4.73384 4.79458 4.81249 4.83234 4.99869 5.01746 5.09054 5.13929 5.26168 5.31732 5.36456 5.50878 5.69845 5.78893 6.06123 6.45393 6.57731 6.90737 7.12568 7.45812 7.89429 8.70399 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010523 B = 0.005749 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2660.130589 B = 4869.152087 C = 6718.525551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.095 3.905 3 N -0.415 5.415 4 C -0.308 4.308 5 H 0.116 0.884 6 C 0.016 3.984 7 N -0.890 5.890 8 Si 0.961 3.039 9 H -0.250 1.250 10 H -0.289 1.289 11 H -0.276 1.276 12 C 0.501 3.499 13 O -0.617 6.617 14 C 0.083 3.917 15 N -0.181 5.181 16 N -0.430 5.430 17 C 0.136 3.864 18 C -0.090 4.090 19 C -0.135 4.135 20 C 0.084 3.916 21 F -0.138 7.138 22 C -0.136 4.136 23 C -0.092 4.092 24 C 0.488 3.512 25 O -0.543 6.543 26 C -0.128 4.128 27 C -0.096 4.096 28 H 0.076 0.924 29 H 0.040 0.960 30 H 0.052 0.948 31 H 0.099 0.901 32 H 0.047 0.953 33 H 0.272 0.728 34 H 0.133 0.867 35 H 0.165 0.835 36 H 0.164 0.836 37 H 0.138 0.862 38 H 0.146 0.854 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.796 9.853 0.515 10.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.028 4.028 3 N -0.132 5.132 4 C -0.439 4.439 5 H 0.133 0.867 6 C -0.188 4.188 7 N -0.528 5.528 8 Si 0.785 3.215 9 H -0.173 1.173 10 H -0.216 1.216 11 H -0.201 1.201 12 C 0.290 3.710 13 O -0.503 6.503 14 C -0.108 4.108 15 N 0.009 4.991 16 N -0.241 5.241 17 C 0.045 3.955 18 C -0.110 4.110 19 C -0.154 4.154 20 C 0.064 3.936 21 F -0.117 7.117 22 C -0.155 4.155 23 C -0.112 4.112 24 C 0.279 3.721 25 O -0.418 6.418 26 C -0.168 4.168 27 C -0.136 4.136 28 H 0.095 0.905 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.117 0.883 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.151 0.849 35 H 0.183 0.817 36 H 0.182 0.818 37 H 0.156 0.844 38 H 0.164 0.836 39 H 0.134 0.866 40 H 0.137 0.863 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.545 10.060 -0.036 10.178 hybrid contribution 0.459 0.138 -0.315 0.573 sum -1.087 10.198 -0.351 10.262 Atomic orbital electron populations 1.21920 0.95189 1.02056 1.00886 1.21641 0.94175 0.84099 1.02871 1.43707 1.51988 1.12355 1.05109 1.20074 1.34002 1.00726 0.89103 0.86702 1.26123 0.94180 0.95974 1.02482 1.69768 1.34461 1.14792 1.33824 0.85320 0.77823 0.79863 0.78472 1.17295 1.21589 1.20116 1.18008 0.82527 0.85761 0.84753 1.90668 1.60763 1.66290 1.32594 1.25042 0.97012 0.95531 0.93244 1.76736 1.09850 0.89138 1.23371 1.47085 1.57404 1.08203 1.11442 1.17675 0.94478 0.95258 0.88055 1.20976 0.98130 0.97094 0.94827 1.21170 0.97178 1.01403 0.95688 1.17780 0.95174 0.95416 0.85182 1.91492 1.95939 1.75426 1.48850 1.21219 1.00237 0.97569 0.96515 1.21037 0.95841 0.98391 0.95933 1.22056 0.76136 0.87882 0.86037 1.90687 1.49701 1.17390 1.84013 1.21896 1.01339 0.98312 0.95205 1.20898 1.00274 0.97937 0.94518 0.90487 0.94063 0.92885 0.88320 0.93493 0.91787 0.84902 0.81721 0.81809 0.84409 0.83607 0.86621 0.86340 0.87231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.22 10.23 71.98 0.74 -4.48 16 2 C 0.09 4.23 5.80 86.38 0.50 4.73 16 3 N -0.41 -19.46 2.47 -640.32 -1.58 -21.04 16 4 C -0.31 -14.50 7.44 84.15 0.63 -13.87 16 5 H 0.12 5.29 6.00 -2.91 -0.02 5.27 16 6 C 0.02 0.79 5.31 84.99 0.45 1.24 16 7 N -0.89 -45.03 11.11 21.69 0.24 -44.79 16 8 Si 0.96 39.26 29.55 68.60 2.03 41.28 16 9 H -0.25 -9.74 7.11 99.48 0.71 -9.04 16 10 H -0.29 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.28 -10.97 7.11 99.48 0.71 -10.26 16 12 C 0.50 22.58 7.58 86.39 0.65 23.24 16 13 O -0.62 -29.45 15.72 -4.44 -0.07 -29.52 16 14 C 0.08 3.14 6.70 44.95 0.30 3.44 16 15 N -0.18 -7.04 7.16 -43.58 -0.31 -7.35 16 16 N -0.43 -15.09 3.56 -303.42 -1.08 -16.17 16 17 C 0.14 4.61 5.59 38.14 0.21 4.82 16 18 C -0.09 -2.75 8.73 22.39 0.20 -2.56 16 19 C -0.14 -3.53 10.02 22.30 0.22 -3.31 16 20 C 0.08 2.24 7.30 22.39 0.16 2.40 16 21 F -0.14 -3.54 17.27 44.97 0.78 -2.77 16 22 C -0.14 -3.62 10.02 22.30 0.22 -3.39 16 23 C -0.09 -2.83 9.76 22.39 0.22 -2.61 16 24 C 0.49 15.70 7.32 87.69 0.64 16.34 16 25 O -0.54 -19.26 15.81 -2.94 -0.05 -19.31 16 26 C -0.13 -3.14 6.20 29.87 0.19 -2.96 16 27 C -0.10 -2.67 5.88 29.80 0.18 -2.50 16 28 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 30 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.10 4.74 5.53 -2.39 -0.01 4.73 16 32 H 0.05 2.16 7.28 -2.39 -0.02 2.15 16 33 H 0.27 13.11 8.31 -92.71 -0.77 12.34 16 34 H 0.13 4.01 7.54 -2.91 -0.02 3.99 16 35 H 0.17 3.31 8.06 -2.91 -0.02 3.28 16 36 H 0.16 3.42 8.06 -2.91 -0.02 3.40 16 37 H 0.14 4.14 8.06 -2.91 -0.02 4.12 16 38 H 0.15 2.66 8.14 -2.38 -0.02 2.64 16 39 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 40 H 0.12 3.20 7.48 -2.39 -0.02 3.18 16 41 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 Total: -1.00 -60.36 353.03 6.54 -53.82 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: 1.08 Total: 25.31 kcal Atomic # 6 Polarization: 15.04 SS G_CDS: 5.51 Total: 20.55 kcal Atomic # 7 Polarization: -86.62 SS G_CDS: -2.73 Total: -89.36 kcal Atomic # 8 Polarization: -48.72 SS G_CDS: -0.12 Total: -48.83 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.78 Total: -2.77 kcal Atomic # 14 Polarization: 39.26 SS G_CDS: 2.03 Total: 41.28 kcal Total: -60.36 6.54 -53.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338300822.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.255 kcal (2) G-P(sol) polarization free energy of solvation -60.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds