Wall clock time and date at job start Tue Mar 31 2020 16:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30874 * 126.20023 * 2 1 4 4 C 1.34576 * 107.28263 * 180.14259 * 3 2 1 5 5 C 1.47829 * 126.01756 * 179.86872 * 4 3 2 6 6 O 1.21566 * 119.99741 * 179.69221 * 5 4 3 7 7 N 1.34770 * 120.00571 * 359.68935 * 5 4 3 8 8 C 1.47433 * 125.64428 * 359.95813 * 7 5 4 9 9 C 1.55393 * 104.87396 * 204.16622 * 8 7 5 10 10 C 1.55158 * 101.36604 * 323.02138 * 9 8 7 11 11 O 1.42905 * 110.71665 * 277.04214 * 10 9 8 12 12 C 1.50698 * 110.72071 * 153.94900 * 10 9 8 13 13 H 1.08000 * 120.00108 * 2.43313 * 12 10 9 14 14 C 1.37875 * 119.99880 * 182.43864 * 12 10 9 15 15 N 1.31516 * 120.00122 * 359.97438 * 14 12 10 16 16 Si 1.86797 * 120.00107 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47289 * 89.99941 * 16 14 12 18 18 H 1.48504 * 109.47431 * 210.00143 * 16 14 12 19 19 H 1.48509 * 109.47375 * 330.00068 * 16 14 12 20 20 C 1.47023 * 125.65372 * 180.02562 * 7 5 4 21 21 N 1.31557 * 107.95524 * 359.60833 * 4 3 2 22 22 N 1.28855 * 108.71128 * 0.23644 * 21 4 3 23 23 C 1.40096 * 125.77348 * 180.02562 * 22 21 4 24 24 N 1.33630 * 125.59584 * 359.97438 * 23 22 21 25 25 C 1.30802 * 109.79393 * 179.97438 * 24 23 22 26 26 N 1.34434 * 108.19530 * 0.02562 * 25 24 23 27 27 H 0.97001 * 126.77187 * 180.02562 * 26 25 24 28 28 N 1.31150 * 125.60057 * 179.67033 * 23 22 21 29 29 H 1.09007 * 109.47258 * 270.29673 * 1 2 3 30 30 H 1.09000 * 109.47340 * 30.29168 * 1 2 3 31 31 H 1.09003 * 109.47321 * 150.29547 * 1 2 3 32 32 H 1.08994 * 110.36621 * 323.00423 * 8 7 5 33 33 H 1.09005 * 110.36538 * 85.21633 * 8 7 5 34 34 H 1.09003 * 111.18887 * 204.98028 * 9 8 7 35 35 H 1.08998 * 111.02037 * 80.98017 * 9 8 7 36 36 H 0.96696 * 114.00036 * 177.55969 * 11 10 9 37 37 H 0.97000 * 119.99972 * 179.97438 * 15 14 12 38 38 H 1.09001 * 109.87979 * 59.49193 * 20 7 5 39 39 H 1.08999 * 110.00722 * 298.39314 * 20 7 5 40 40 H 1.08000 * 125.90390 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2800 1.0561 0.0000 4 6 3.5530 0.6198 -0.0032 5 6 4.7630 1.4691 -0.0071 6 8 5.8653 0.9565 -0.0041 7 7 4.6442 2.8115 -0.0141 8 6 3.3749 3.5616 -0.0192 9 6 3.7294 4.9411 -0.6407 10 6 5.1449 5.1860 -0.0543 11 8 5.0586 5.7329 1.2632 12 6 5.9454 6.0918 -0.9541 13 1 5.4950 6.5028 -1.8455 14 6 7.2529 6.3957 -0.6394 15 7 7.8013 5.8956 0.4463 16 14 8.2455 7.5179 -1.7551 17 1 8.0740 8.9271 -1.3191 18 1 9.6816 7.1475 -1.6790 19 1 7.7701 7.3713 -3.1544 20 6 5.7586 3.7705 -0.0191 21 7 3.5310 -0.6956 0.0035 22 7 2.3038 -1.0884 0.0056 23 6 1.8703 -2.4206 0.0129 24 7 2.6629 -3.4964 0.0183 25 6 1.9348 -4.5830 0.0250 26 7 0.6402 -4.2208 0.0233 27 1 -0.1284 -4.8126 0.0275 28 7 0.6200 -2.8166 0.0211 29 1 -0.3634 0.0053 1.0277 30 1 -0.3634 0.8873 -0.5183 31 1 -0.3634 -0.8926 -0.5092 32 1 2.6338 3.0490 -0.6323 33 1 3.0039 3.6865 0.9981 34 1 3.0319 5.7118 -0.3129 35 1 3.7620 4.8830 -1.7286 36 1 5.9158 5.8699 1.6891 37 1 8.7213 6.1091 0.6675 38 1 6.3789 3.6132 -0.9015 39 1 6.3590 3.6492 0.8825 40 1 2.3090 -5.5961 0.0300 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363522847.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:59:12 Heat of formation + Delta-G solvation = 131.386059 kcal Electronic energy + Delta-G solvation = -28301.740705 eV Core-core repulsion = 24157.048185 eV Total energy + Delta-G solvation = -4144.692521 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.134 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -43.85589 -42.71576 -39.18264 -37.10570 -35.11319 -34.20445 -33.50714 -32.81335 -32.13234 -31.21938 -29.96409 -28.34714 -27.82280 -26.01891 -24.30654 -24.08865 -22.66124 -21.88091 -20.73498 -19.55423 -19.21235 -19.10063 -17.67263 -17.38479 -17.08318 -16.37128 -15.83634 -15.52741 -15.45233 -14.97554 -14.70067 -14.25686 -14.10781 -13.46048 -13.29629 -13.01863 -12.89208 -12.79991 -12.64076 -12.08947 -12.01915 -11.69636 -11.52891 -11.34049 -11.01550 -10.84330 -10.82027 -10.78604 -10.55138 -10.42962 -10.33318 -10.15048 -10.01414 -9.64477 -9.41272 -9.22994 -8.61012 -8.25468 -7.82669 -6.22852 -4.31118 0.44592 1.10587 1.32862 2.02377 2.19319 2.47754 3.20106 3.27273 3.33661 3.36514 3.63846 3.70947 3.82615 3.98913 4.32243 4.45678 4.74685 4.99130 5.05660 5.19976 5.22450 5.31868 5.52724 5.61037 5.83062 5.94803 5.99658 6.05729 6.22218 6.28881 6.35901 6.51442 6.63787 6.86943 6.95632 7.03093 7.17275 7.32533 7.43377 7.79433 7.89647 8.07433 8.18690 8.65970 8.73273 9.37021 9.47455 10.85004 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.028770 B = 0.002609 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.988677 B =10730.397853 C =11284.692174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.241 3.759 3 N -0.462 5.462 4 C 0.181 3.819 5 C 0.613 3.387 6 O -0.524 6.524 7 N -0.587 5.587 8 C 0.103 3.897 9 C -0.119 4.119 10 C 0.248 3.752 11 O -0.584 6.584 12 C -0.536 4.536 13 H 0.067 0.933 14 C 0.070 3.930 15 N -0.895 5.895 16 Si 0.904 3.096 17 H -0.278 1.278 18 H -0.285 1.285 19 H -0.272 1.272 20 C 0.104 3.896 21 N -0.231 5.231 22 N -0.236 5.236 23 C 0.465 3.535 24 N -0.518 5.518 25 C 0.292 3.708 26 N -0.469 5.469 27 H 0.452 0.548 28 N -0.298 5.298 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.383 0.617 37 H 0.270 0.730 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.840 -20.143 -0.487 27.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.034 4.034 3 N -0.188 5.188 4 C -0.101 4.101 5 C 0.395 3.605 6 O -0.398 6.398 7 N -0.319 5.319 8 C -0.020 4.020 9 C -0.157 4.157 10 C 0.207 3.793 11 O -0.393 6.393 12 C -0.574 4.574 13 H 0.086 0.914 14 C -0.133 4.133 15 N -0.534 5.534 16 Si 0.731 3.269 17 H -0.204 1.204 18 H -0.210 1.210 19 H -0.197 1.197 20 C -0.017 4.017 21 N -0.065 5.065 22 N -0.029 5.029 23 C 0.096 3.904 24 N -0.248 5.248 25 C -0.007 4.007 26 N -0.189 5.189 27 H 0.300 0.700 28 N -0.133 5.133 29 H 0.112 0.888 30 H 0.120 0.880 31 H 0.113 0.887 32 H 0.103 0.897 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.234 0.766 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -18.336 -19.987 -0.498 27.128 hybrid contribution 0.692 -0.322 -0.359 0.844 sum -17.644 -20.309 -0.857 26.917 Atomic orbital electron populations 1.20500 0.82364 1.05442 1.04929 1.25428 0.97905 0.80639 0.99414 1.71631 1.00610 1.26004 1.20518 1.24263 0.93170 0.88290 1.04336 1.15819 0.84610 0.80795 0.79257 1.90824 1.25191 1.72822 1.51006 1.48489 1.11086 1.03410 1.68928 1.22625 0.85630 0.92419 1.01288 1.22870 0.98348 0.94721 0.99734 1.19508 0.90160 0.87561 0.82035 1.86103 1.36346 1.85860 1.31011 1.21524 0.96906 1.29621 1.09338 0.91445 1.25084 0.97546 0.95391 0.95325 1.69643 1.14963 1.44004 1.24810 0.86398 0.79025 0.80587 0.80858 1.20424 1.21033 1.19721 1.23170 0.87526 0.88671 1.02330 1.74736 0.98793 1.13782 1.19207 1.43195 1.04738 1.02443 1.52548 1.19384 0.87165 0.83921 0.99952 1.70380 1.33984 0.95861 1.24526 1.26293 0.80362 1.00144 0.93901 1.48030 1.09678 1.04307 1.56926 0.70035 1.78225 1.15830 0.89839 1.29439 0.88826 0.87960 0.88716 0.89675 0.91626 0.90428 0.90591 0.76559 0.91958 0.91103 0.91224 0.74470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.63 9.84 36.01 0.35 -0.27 16 2 C 0.24 3.39 7.94 -155.24 -1.23 2.16 16 3 N -0.46 -7.87 8.47 -8.47 -0.07 -7.94 16 4 C 0.18 3.64 7.79 -156.30 -1.22 2.42 16 5 C 0.61 14.14 7.86 -12.34 -0.10 14.05 16 6 O -0.52 -13.65 17.41 5.31 0.09 -13.55 16 7 N -0.59 -13.28 3.33 -171.32 -0.57 -13.85 16 8 C 0.10 2.03 6.14 -2.26 -0.01 2.01 16 9 C -0.12 -2.48 6.26 -24.32 -0.15 -2.63 16 10 C 0.25 6.15 0.85 -89.94 -0.08 6.08 16 11 O -0.58 -15.03 13.08 -35.23 -0.46 -15.49 16 12 C -0.54 -14.20 8.11 -34.44 -0.28 -14.48 16 13 H 0.07 1.75 7.77 -52.49 -0.41 1.34 16 14 C 0.07 1.84 5.27 -17.82 -0.09 1.75 16 15 N -0.90 -24.19 10.96 55.43 0.61 -23.59 16 16 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 20 C 0.10 2.62 5.38 -3.06 -0.02 2.60 16 21 N -0.23 -4.51 12.03 32.08 0.39 -4.13 16 22 N -0.24 -3.71 3.52 -10.92 -0.04 -3.75 16 23 C 0.47 5.93 8.74 -320.53 -2.80 3.13 16 24 N -0.52 -6.06 11.20 -14.87 -0.17 -6.22 16 25 C 0.29 1.44 13.12 -90.67 -1.19 0.25 16 26 N -0.47 -1.91 7.44 29.52 0.22 -1.69 16 27 H 0.45 -0.24 8.96 -182.34 -1.63 -1.88 16 28 N -0.30 -2.66 10.41 30.08 0.31 -2.35 16 29 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.09 0.72 6.33 -51.93 -0.33 0.39 16 32 H 0.09 1.52 6.16 -51.93 -0.32 1.20 16 33 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 34 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 35 H 0.08 1.52 8.04 -51.93 -0.42 1.10 16 36 H 0.38 10.09 7.23 45.56 0.33 10.42 16 37 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 38 H 0.07 1.91 7.82 -51.93 -0.41 1.50 16 39 H 0.07 1.89 7.99 -51.93 -0.42 1.47 16 40 H 0.24 -0.22 8.06 -52.49 -0.42 -0.64 16 LS Contribution 345.21 15.07 5.20 5.20 Total: -1.00 -37.16 345.21 -11.17 -48.33 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -4.85 Total: 6.19 kcal Atomic # 6 Polarization: 23.89 SS G_CDS: -6.82 Total: 17.07 kcal Atomic # 7 Polarization: -64.19 SS G_CDS: 0.68 Total: -63.51 kcal Atomic # 8 Polarization: -28.67 SS G_CDS: -0.37 Total: -29.04 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -37.16 -11.17 -48.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363522847.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.716 kcal (2) G-P(sol) polarization free energy of solvation -37.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds