Wall clock time and date at job start Tue Mar 31 2020 16:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30874 * 126.20023 * 2 1 4 4 C 1.34576 * 107.28263 * 180.14259 * 3 2 1 5 5 C 1.47829 * 126.01756 * 179.86872 * 4 3 2 6 6 O 1.21566 * 119.99741 * 179.69221 * 5 4 3 7 7 N 1.34770 * 120.00571 * 359.68935 * 5 4 3 8 8 C 1.47433 * 125.64428 * 359.95813 * 7 5 4 9 9 C 1.55393 * 104.87396 * 204.16622 * 8 7 5 10 10 C 1.55158 * 101.36604 * 323.02138 * 9 8 7 11 11 O 1.42905 * 110.71665 * 277.04214 * 10 9 8 12 12 C 1.50698 * 110.72071 * 153.94900 * 10 9 8 13 13 H 1.08000 * 120.00108 * 2.43313 * 12 10 9 14 14 C 1.37875 * 119.99880 * 182.43864 * 12 10 9 15 15 N 1.31516 * 120.00122 * 359.97438 * 14 12 10 16 16 Si 1.86797 * 120.00107 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47289 * 89.99941 * 16 14 12 18 18 H 1.48504 * 109.47431 * 210.00143 * 16 14 12 19 19 H 1.48509 * 109.47375 * 330.00068 * 16 14 12 20 20 C 1.47023 * 125.65372 * 180.02562 * 7 5 4 21 21 N 1.31557 * 107.95524 * 359.60833 * 4 3 2 22 22 N 1.28855 * 108.71128 * 0.23644 * 21 4 3 23 23 C 1.40096 * 125.77348 * 180.02562 * 22 21 4 24 24 N 1.33630 * 125.59584 * 359.97438 * 23 22 21 25 25 C 1.30802 * 109.79393 * 179.97438 * 24 23 22 26 26 N 1.34434 * 108.19530 * 0.02562 * 25 24 23 27 27 H 0.97001 * 126.77187 * 180.02562 * 26 25 24 28 28 N 1.31150 * 125.60057 * 179.67033 * 23 22 21 29 29 H 1.09007 * 109.47258 * 270.29673 * 1 2 3 30 30 H 1.09000 * 109.47340 * 30.29168 * 1 2 3 31 31 H 1.09003 * 109.47321 * 150.29547 * 1 2 3 32 32 H 1.08994 * 110.36621 * 323.00423 * 8 7 5 33 33 H 1.09005 * 110.36538 * 85.21633 * 8 7 5 34 34 H 1.09003 * 111.18887 * 204.98028 * 9 8 7 35 35 H 1.08998 * 111.02037 * 80.98017 * 9 8 7 36 36 H 0.96696 * 114.00036 * 177.55969 * 11 10 9 37 37 H 0.97000 * 119.99972 * 179.97438 * 15 14 12 38 38 H 1.09001 * 109.87979 * 59.49193 * 20 7 5 39 39 H 1.08999 * 110.00722 * 298.39314 * 20 7 5 40 40 H 1.08000 * 125.90390 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2800 1.0561 0.0000 4 6 3.5530 0.6198 -0.0032 5 6 4.7630 1.4691 -0.0071 6 8 5.8653 0.9565 -0.0041 7 7 4.6442 2.8115 -0.0141 8 6 3.3749 3.5616 -0.0192 9 6 3.7294 4.9411 -0.6407 10 6 5.1449 5.1860 -0.0543 11 8 5.0586 5.7329 1.2632 12 6 5.9454 6.0918 -0.9541 13 1 5.4950 6.5028 -1.8455 14 6 7.2529 6.3957 -0.6394 15 7 7.8013 5.8956 0.4463 16 14 8.2455 7.5179 -1.7551 17 1 8.0740 8.9271 -1.3191 18 1 9.6816 7.1475 -1.6790 19 1 7.7701 7.3713 -3.1544 20 6 5.7586 3.7705 -0.0191 21 7 3.5310 -0.6956 0.0035 22 7 2.3038 -1.0884 0.0056 23 6 1.8703 -2.4206 0.0129 24 7 2.6629 -3.4964 0.0183 25 6 1.9348 -4.5830 0.0250 26 7 0.6402 -4.2208 0.0233 27 1 -0.1284 -4.8126 0.0275 28 7 0.6200 -2.8166 0.0211 29 1 -0.3634 0.0053 1.0277 30 1 -0.3634 0.8873 -0.5183 31 1 -0.3634 -0.8926 -0.5092 32 1 2.6338 3.0490 -0.6323 33 1 3.0039 3.6865 0.9981 34 1 3.0319 5.7118 -0.3129 35 1 3.7620 4.8830 -1.7286 36 1 5.9158 5.8699 1.6891 37 1 8.7213 6.1091 0.6675 38 1 6.3789 3.6132 -0.9015 39 1 6.3590 3.6492 0.8825 40 1 2.3090 -5.5961 0.0300 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363522847.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:59:11 Heat of formation + Delta-G solvation = 105.196664 kcal Electronic energy + Delta-G solvation = -28302.876363 eV Core-core repulsion = 24157.048185 eV Total energy + Delta-G solvation = -4145.828178 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.134 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -45.03506 -43.39433 -41.01121 -39.00539 -36.36664 -35.90534 -34.56395 -34.18554 -33.53982 -32.18458 -31.61124 -29.68195 -29.30993 -27.78412 -25.84316 -24.97394 -24.07361 -22.95208 -21.84487 -21.34766 -20.70738 -19.81038 -19.13234 -18.77560 -18.47252 -17.83912 -17.35589 -16.84820 -16.75711 -16.31155 -16.07213 -16.01868 -15.29502 -14.85966 -14.80164 -14.72437 -14.12664 -14.02954 -13.84304 -13.63823 -13.43667 -13.34562 -12.88550 -12.82496 -12.66530 -12.53884 -12.30988 -12.26319 -12.12128 -11.74884 -11.51575 -11.49593 -11.41841 -11.16762 -11.12714 -10.62270 -10.47135 -10.29800 -9.69107 -8.24865 -6.40698 -0.50452 0.21642 0.42162 0.78961 1.43162 1.45414 1.55252 1.60093 1.67560 1.78422 2.02988 2.39596 2.65321 2.82226 3.01531 3.13663 3.50327 3.79710 3.83465 4.09669 4.20753 4.30395 4.42215 4.53259 4.55725 4.61564 4.65310 4.67995 4.79270 4.92649 5.00124 5.04205 5.14901 5.24256 5.36157 5.45320 5.50660 5.75677 6.00468 6.05359 6.34462 6.46835 6.66425 6.76124 6.92030 7.30113 7.38153 8.81642 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.028770 B = 0.002609 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.988677 B =10730.397853 C =11284.692174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.253 3.747 3 N -0.475 5.475 4 C 0.159 3.841 5 C 0.611 3.389 6 O -0.568 6.568 7 N -0.589 5.589 8 C 0.113 3.887 9 C -0.111 4.111 10 C 0.235 3.765 11 O -0.586 6.586 12 C -0.555 4.555 13 H 0.070 0.930 14 C 0.024 3.976 15 N -0.917 5.917 16 Si 0.966 3.034 17 H -0.271 1.271 18 H -0.286 1.286 19 H -0.267 1.267 20 C 0.119 3.881 21 N -0.258 5.258 22 N -0.235 5.235 23 C 0.426 3.574 24 N -0.578 5.578 25 C 0.317 3.683 26 N -0.441 5.441 27 H 0.475 0.525 28 N -0.288 5.288 29 H 0.114 0.886 30 H 0.121 0.879 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.377 0.623 37 H 0.271 0.729 38 H 0.043 0.957 39 H 0.039 0.961 40 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.154 -21.800 -1.193 31.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.021 4.021 3 N -0.202 5.202 4 C -0.122 4.122 5 C 0.395 3.605 6 O -0.446 6.446 7 N -0.321 5.321 8 C -0.009 4.009 9 C -0.148 4.148 10 C 0.195 3.805 11 O -0.395 6.395 12 C -0.593 4.593 13 H 0.089 0.911 14 C -0.176 4.176 15 N -0.557 5.557 16 Si 0.791 3.209 17 H -0.197 1.197 18 H -0.212 1.212 19 H -0.192 1.192 20 C -0.003 4.003 21 N -0.095 5.095 22 N -0.028 5.028 23 C 0.058 3.942 24 N -0.309 5.309 25 C 0.019 3.981 26 N -0.165 5.165 27 H 0.328 0.672 28 N -0.126 5.126 29 H 0.132 0.868 30 H 0.140 0.860 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.087 0.913 34 H 0.114 0.886 35 H 0.103 0.897 36 H 0.227 0.773 37 H 0.080 0.920 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.310 0.690 Dipole moment (debyes) X Y Z Total from point charges -21.752 -21.687 -1.206 30.739 hybrid contribution 1.571 -0.079 -0.111 1.577 sum -20.181 -21.766 -1.317 29.711 Atomic orbital electron populations 1.20808 0.78245 1.07001 1.06652 1.26359 0.99550 0.79421 0.96776 1.71505 0.99342 1.27493 1.21845 1.23467 0.93183 0.88357 1.07185 1.16193 0.85273 0.80963 0.78054 1.90772 1.27278 1.73695 1.52845 1.48503 1.11407 1.03387 1.68763 1.22706 0.84658 0.91586 1.01918 1.22879 0.96086 0.95722 1.00148 1.19706 0.92566 0.86629 0.81597 1.86093 1.35879 1.85930 1.31555 1.21827 0.97574 1.30085 1.09801 0.91136 1.25847 0.98556 0.96667 0.96573 1.69752 1.15120 1.44783 1.26005 0.85433 0.77292 0.78925 0.79257 1.19660 1.21200 1.19172 1.22782 0.87962 0.90127 0.99461 1.74583 1.01523 1.13612 1.19750 1.43271 1.03660 1.04368 1.51483 1.19499 0.88443 0.83072 1.03234 1.70289 1.36491 0.97247 1.26900 1.27250 0.79697 1.00540 0.90596 1.47999 1.10776 1.02762 1.54914 0.67187 1.78111 1.14005 0.92438 1.28006 0.86751 0.86040 0.87346 0.87280 0.91263 0.88629 0.89677 0.77302 0.91983 0.93817 0.94247 0.68980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.96 9.84 71.24 0.70 -0.25 16 2 C 0.25 6.80 7.94 138.07 1.10 7.90 16 3 N -0.48 -15.98 8.47 -180.71 -1.53 -17.51 16 4 C 0.16 6.58 7.79 137.09 1.07 7.65 16 5 C 0.61 29.63 7.86 86.78 0.68 30.32 16 6 O -0.57 -31.59 17.41 -3.92 -0.07 -31.66 16 7 N -0.59 -27.65 3.33 -814.22 -2.71 -30.36 16 8 C 0.11 4.40 6.14 87.02 0.53 4.93 16 9 C -0.11 -4.53 6.26 32.16 0.20 -4.33 16 10 C 0.24 11.92 0.85 -10.35 -0.01 11.91 16 11 O -0.59 -30.79 13.08 -148.98 -1.95 -32.73 16 12 C -0.55 -29.77 8.11 25.60 0.21 -29.56 16 13 H 0.07 3.66 7.77 -2.91 -0.02 3.63 16 14 C 0.02 1.30 5.27 84.65 0.45 1.75 16 15 N -0.92 -51.11 10.96 21.45 0.23 -50.87 16 16 Si 0.97 42.97 29.54 68.60 2.03 44.99 16 17 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 18 H -0.29 -12.71 7.11 99.48 0.71 -12.01 16 19 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 20 C 0.12 6.30 5.38 86.73 0.47 6.77 16 21 N -0.26 -10.39 12.03 -52.43 -0.63 -11.02 16 22 N -0.24 -7.33 3.52 -188.46 -0.66 -7.99 16 23 C 0.43 10.31 8.74 260.69 2.28 12.59 16 24 N -0.58 -12.72 11.20 -200.95 -2.25 -14.97 16 25 C 0.32 2.00 13.12 180.37 2.37 4.36 16 26 N -0.44 -1.86 7.44 -60.50 -0.45 -2.31 16 27 H 0.47 -2.74 8.96 -213.10 -1.91 -4.65 16 28 N -0.29 -4.33 10.41 -58.74 -0.61 -4.95 16 29 H 0.11 1.21 8.14 -2.38 -0.02 1.19 16 30 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.11 1.26 6.33 -2.39 -0.02 1.24 16 32 H 0.11 3.77 6.16 -2.39 -0.01 3.76 16 33 H 0.07 2.67 8.14 -2.38 -0.02 2.65 16 34 H 0.10 3.57 8.14 -2.39 -0.02 3.56 16 35 H 0.08 3.32 8.04 -2.39 -0.02 3.30 16 36 H 0.38 20.60 7.23 -74.06 -0.54 20.07 16 37 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 38 H 0.04 2.50 7.82 -2.39 -0.02 2.48 16 39 H 0.04 2.28 7.99 -2.39 -0.02 2.26 16 40 H 0.30 -2.06 8.06 -2.91 -0.02 -2.08 16 Total: -1.00 -87.01 345.21 0.13 -86.88 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: -1.31 Total: 18.47 kcal Atomic # 6 Polarization: 43.99 SS G_CDS: 10.04 Total: 54.02 kcal Atomic # 7 Polarization: -131.37 SS G_CDS: -8.61 Total: -139.98 kcal Atomic # 8 Polarization: -62.38 SS G_CDS: -2.02 Total: -64.39 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 44.99 kcal Total: -87.01 0.13 -86.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363522847.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.074 kcal (2) G-P(sol) polarization free energy of solvation -87.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds