Wall clock time and date at job start Tue Mar 31 2020 16:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30862 * 126.20448 * 2 1 4 4 C 1.34574 * 107.29217 * 180.13157 * 3 2 1 5 5 C 1.47829 * 126.02315 * 179.89391 * 4 3 2 6 6 O 1.21563 * 119.99525 * 179.68675 * 5 4 3 7 7 N 1.34770 * 120.00138 * 359.68679 * 5 4 3 8 8 C 1.47422 * 125.65124 * 359.97438 * 7 5 4 9 9 C 1.54909 * 104.83564 * 155.91495 * 8 7 5 10 10 C 1.55152 * 101.58032 * 37.00513 * 9 8 7 11 11 O 1.42903 * 110.72100 * 82.86680 * 10 9 8 12 12 C 1.50703 * 110.71825 * 205.95483 * 10 9 8 13 13 H 1.07993 * 120.00249 * 357.56786 * 12 10 9 14 14 C 1.37877 * 119.99923 * 177.55974 * 12 10 9 15 15 N 1.31521 * 120.00053 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 120.00236 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.46913 * 359.97438 * 16 14 12 18 18 H 1.48492 * 109.47079 * 119.99981 * 16 14 12 19 19 H 1.48501 * 109.46992 * 240.00088 * 16 14 12 20 20 C 1.47027 * 125.65010 * 180.02562 * 7 5 4 21 21 N 1.31561 * 107.95003 * 359.62657 * 4 3 2 22 22 N 1.28851 * 108.71012 * 0.23309 * 21 4 3 23 23 C 1.40103 * 125.77268 * 180.02562 * 22 21 4 24 24 N 1.33632 * 125.59700 * 359.96604 * 23 22 21 25 25 C 1.30797 * 109.79367 * 180.02562 * 24 23 22 26 26 N 1.34433 * 108.19594 * 0.02562 * 25 24 23 27 27 H 0.97002 * 126.77215 * 179.97438 * 26 25 24 28 28 N 1.31148 * 125.59830 * 179.66931 * 23 22 21 29 29 H 1.08992 * 109.47356 * 270.27579 * 1 2 3 30 30 H 1.09003 * 109.47191 * 30.27942 * 1 2 3 31 31 H 1.09005 * 109.46990 * 150.27665 * 1 2 3 32 32 H 1.09002 * 110.36847 * 37.06750 * 8 7 5 33 33 H 1.09005 * 110.45737 * 274.79985 * 8 7 5 34 34 H 1.09005 * 111.00113 * 278.93173 * 9 8 7 35 35 H 1.08998 * 111.03822 * 155.09465 * 9 8 7 36 36 H 0.96700 * 114.00311 * 179.97438 * 11 10 9 37 37 H 0.97000 * 119.99959 * 179.97438 * 15 14 12 38 38 H 1.09003 * 109.87825 * 61.59771 * 20 7 5 39 39 H 1.09001 * 109.88209 * 300.43826 * 20 7 5 40 40 H 1.07997 * 125.90362 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2800 1.0559 0.0000 4 6 3.5531 0.6198 -0.0030 5 6 4.7631 1.4690 -0.0063 6 8 5.8653 0.9565 -0.0030 7 7 4.6441 2.8115 -0.0129 8 6 3.3750 3.5616 -0.0179 9 6 3.7285 4.9432 0.5869 10 6 5.1448 5.1862 0.0018 11 8 5.0607 5.7186 -1.3216 12 6 5.9400 6.1043 0.8941 13 1 5.4858 6.5235 1.7796 14 6 7.2475 6.4089 0.5798 15 7 7.8006 5.8986 -0.4988 16 14 8.2334 7.5462 1.6861 17 1 7.3880 7.9831 2.8261 18 1 9.4252 6.8254 2.2007 19 1 8.6703 8.7348 0.9104 20 6 5.7586 3.7705 -0.0173 21 7 3.5310 -0.6956 0.0035 22 7 2.3038 -1.0884 0.0053 23 6 1.8703 -2.4207 0.0122 24 7 2.6629 -3.4966 0.0175 25 6 1.9348 -4.5831 0.0227 26 7 0.6402 -4.2209 0.0203 27 1 -0.1284 -4.8127 0.0227 28 7 0.6201 -2.8167 0.0202 29 1 -0.3633 0.0049 1.0276 30 1 -0.3634 0.8875 -0.5182 31 1 -0.3633 -0.8925 -0.5096 32 1 2.6328 3.0557 0.5996 33 1 3.0047 3.6770 -1.0366 34 1 3.7581 4.8971 1.6756 35 1 3.0298 5.7086 0.2492 36 1 5.9193 5.8889 -1.7325 37 1 8.7203 6.1132 -0.7201 38 1 6.3578 3.6382 -0.9182 39 1 6.3780 3.6230 0.8673 40 1 2.3089 -5.5962 0.0273 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363522849.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:59:23 Heat of formation + Delta-G solvation = 131.229434 kcal Electronic energy + Delta-G solvation = -28301.313119 eV Core-core repulsion = 24156.613807 eV Total energy + Delta-G solvation = -4144.699313 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.85494 -42.71556 -39.18849 -37.11292 -35.11214 -34.21556 -33.50696 -32.81341 -32.13080 -31.21986 -29.97567 -28.34642 -27.83678 -26.02053 -24.30821 -24.09031 -22.65418 -21.87458 -20.73401 -19.55395 -19.21161 -19.09969 -17.67101 -17.38512 -17.09703 -16.37188 -15.83575 -15.52655 -15.45797 -14.97856 -14.70160 -14.25148 -14.09688 -13.45401 -13.31668 -12.99635 -12.90603 -12.79801 -12.65056 -12.08696 -12.01241 -11.70308 -11.53937 -11.34327 -11.03563 -10.83942 -10.82308 -10.78072 -10.54573 -10.43027 -10.32670 -10.14603 -10.01449 -9.64329 -9.41144 -9.22269 -8.61924 -8.25937 -7.82394 -6.23509 -4.31994 0.44684 1.10659 1.32960 2.02549 2.19364 2.47825 3.20174 3.26088 3.33630 3.37239 3.63939 3.71118 3.82729 3.99011 4.31772 4.45762 4.74809 4.99213 5.05031 5.19936 5.22495 5.31984 5.52890 5.62535 5.83123 5.95040 5.99776 6.05716 6.22049 6.28901 6.35990 6.52053 6.64446 6.87150 6.95800 7.03678 7.17366 7.33166 7.43558 7.79028 7.89749 8.06453 8.18804 8.66127 8.73087 9.36620 9.47416 10.84181 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.028803 B = 0.002607 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.885512 B =10735.834750 C =11287.880480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.241 3.759 3 N -0.462 5.462 4 C 0.181 3.819 5 C 0.613 3.387 6 O -0.524 6.524 7 N -0.587 5.587 8 C 0.103 3.897 9 C -0.119 4.119 10 C 0.248 3.752 11 O -0.584 6.584 12 C -0.535 4.535 13 H 0.068 0.932 14 C 0.069 3.931 15 N -0.895 5.895 16 Si 0.904 3.096 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.282 1.282 20 C 0.104 3.896 21 N -0.231 5.231 22 N -0.236 5.236 23 C 0.465 3.535 24 N -0.519 5.519 25 C 0.292 3.708 26 N -0.469 5.469 27 H 0.452 0.548 28 N -0.298 5.298 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.384 0.616 37 H 0.270 0.730 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.831 -20.082 0.626 27.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.034 4.034 3 N -0.188 5.188 4 C -0.101 4.101 5 C 0.395 3.605 6 O -0.398 6.398 7 N -0.319 5.319 8 C -0.020 4.020 9 C -0.157 4.157 10 C 0.207 3.793 11 O -0.394 6.394 12 C -0.573 4.573 13 H 0.086 0.914 14 C -0.134 4.134 15 N -0.534 5.534 16 Si 0.731 3.269 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.017 4.017 21 N -0.065 5.065 22 N -0.029 5.029 23 C 0.096 3.904 24 N -0.248 5.248 25 C -0.007 4.007 26 N -0.189 5.189 27 H 0.300 0.700 28 N -0.133 5.133 29 H 0.112 0.888 30 H 0.121 0.879 31 H 0.113 0.887 32 H 0.104 0.896 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.235 0.765 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -18.333 -19.949 0.647 27.101 hybrid contribution 0.696 -0.303 0.399 0.857 sum -17.637 -20.252 1.045 26.876 Atomic orbital electron populations 1.20499 0.82364 1.05471 1.04906 1.25428 0.97905 0.80636 0.99414 1.71621 1.00615 1.26013 1.20519 1.24265 0.93166 0.88288 1.04332 1.15818 0.84608 0.80798 0.79259 1.90823 1.25195 1.72819 1.51010 1.48494 1.11077 1.03413 1.68923 1.22543 0.85686 0.92394 1.01339 1.22794 0.98386 0.94734 0.99826 1.19503 0.90139 0.87693 0.81924 1.86097 1.36323 1.86087 1.30863 1.21562 0.96943 1.28877 1.09958 0.91367 1.25096 0.97532 0.95469 0.95306 1.69654 1.14785 1.43881 1.25083 0.86343 0.79786 0.80253 0.80493 1.19593 1.20784 1.20785 1.23161 0.87508 0.88706 1.02288 1.74736 0.98794 1.13783 1.19206 1.43200 1.04738 1.02442 1.52551 1.19386 0.87164 0.83921 0.99950 1.70379 1.33986 0.95862 1.24526 1.26290 0.80363 1.00144 0.93901 1.48030 1.09677 1.04306 1.56930 0.70036 1.78226 1.15829 0.89838 1.29437 0.88838 0.87948 0.88710 0.89630 0.91648 0.90608 0.90459 0.76486 0.91997 0.91240 0.91112 0.74472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.63 9.84 36.01 0.35 -0.27 16 2 C 0.24 3.40 7.94 -155.25 -1.23 2.16 16 3 N -0.46 -7.88 8.46 -8.47 -0.07 -7.95 16 4 C 0.18 3.65 7.79 -156.30 -1.22 2.43 16 5 C 0.61 14.16 7.86 -12.34 -0.10 14.06 16 6 O -0.52 -13.66 17.41 5.31 0.09 -13.57 16 7 N -0.59 -13.29 3.33 -171.64 -0.57 -13.86 16 8 C 0.10 2.03 6.13 -2.53 -0.02 2.01 16 9 C -0.12 -2.49 6.22 -24.59 -0.15 -2.65 16 10 C 0.25 6.16 0.86 -89.94 -0.08 6.08 16 11 O -0.58 -15.04 13.09 -35.23 -0.46 -15.50 16 12 C -0.54 -14.17 8.12 -34.44 -0.28 -14.45 16 13 H 0.07 1.78 7.77 -52.49 -0.41 1.37 16 14 C 0.07 1.82 5.26 -17.82 -0.09 1.73 16 15 N -0.89 -24.15 10.97 55.43 0.61 -23.55 16 16 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 17 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 20 C 0.10 2.63 5.39 -3.07 -0.02 2.61 16 21 N -0.23 -4.52 12.03 32.08 0.39 -4.13 16 22 N -0.24 -3.71 3.52 -10.92 -0.04 -3.75 16 23 C 0.47 5.93 8.74 -320.52 -2.80 3.13 16 24 N -0.52 -6.06 11.20 -14.87 -0.17 -6.23 16 25 C 0.29 1.44 13.12 -90.68 -1.19 0.25 16 26 N -0.47 -1.91 7.44 29.52 0.22 -1.69 16 27 H 0.45 -0.24 8.96 -182.34 -1.63 -1.88 16 28 N -0.30 -2.66 10.41 30.08 0.31 -2.35 16 29 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.09 0.72 6.33 -51.93 -0.33 0.39 16 32 H 0.09 1.53 6.14 -51.93 -0.32 1.21 16 33 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.08 1.52 8.04 -51.93 -0.42 1.10 16 35 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 36 H 0.38 10.12 7.17 45.56 0.33 10.45 16 37 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 38 H 0.07 1.89 8.01 -51.93 -0.42 1.47 16 39 H 0.07 1.90 7.82 -51.93 -0.41 1.50 16 40 H 0.24 -0.22 8.06 -52.49 -0.42 -0.64 16 LS Contribution 345.17 15.07 5.20 5.20 Total: -1.00 -37.14 345.17 -11.18 -48.32 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -4.85 Total: 6.23 kcal Atomic # 6 Polarization: 23.93 SS G_CDS: -6.82 Total: 17.11 kcal Atomic # 7 Polarization: -64.19 SS G_CDS: 0.68 Total: -63.51 kcal Atomic # 8 Polarization: -28.70 SS G_CDS: -0.37 Total: -29.07 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -37.14 -11.18 -48.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363522849.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.548 kcal (2) G-P(sol) polarization free energy of solvation -37.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds