Wall clock time and date at job start Tue Mar 31 2020 16:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30862 * 126.20448 * 2 1 4 4 C 1.34574 * 107.29217 * 180.13157 * 3 2 1 5 5 C 1.47829 * 126.02315 * 179.89391 * 4 3 2 6 6 O 1.21563 * 119.99525 * 179.68675 * 5 4 3 7 7 N 1.34770 * 120.00138 * 359.68679 * 5 4 3 8 8 C 1.47422 * 125.65124 * 359.97438 * 7 5 4 9 9 C 1.54909 * 104.83564 * 155.91495 * 8 7 5 10 10 C 1.55152 * 101.58032 * 37.00513 * 9 8 7 11 11 O 1.42903 * 110.72100 * 82.86680 * 10 9 8 12 12 C 1.50703 * 110.71825 * 205.95483 * 10 9 8 13 13 H 1.07993 * 120.00249 * 357.56786 * 12 10 9 14 14 C 1.37877 * 119.99923 * 177.55974 * 12 10 9 15 15 N 1.31521 * 120.00053 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 120.00236 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.46913 * 359.97438 * 16 14 12 18 18 H 1.48492 * 109.47079 * 119.99981 * 16 14 12 19 19 H 1.48501 * 109.46992 * 240.00088 * 16 14 12 20 20 C 1.47027 * 125.65010 * 180.02562 * 7 5 4 21 21 N 1.31561 * 107.95003 * 359.62657 * 4 3 2 22 22 N 1.28851 * 108.71012 * 0.23309 * 21 4 3 23 23 C 1.40103 * 125.77268 * 180.02562 * 22 21 4 24 24 N 1.33632 * 125.59700 * 359.96604 * 23 22 21 25 25 C 1.30797 * 109.79367 * 180.02562 * 24 23 22 26 26 N 1.34433 * 108.19594 * 0.02562 * 25 24 23 27 27 H 0.97002 * 126.77215 * 179.97438 * 26 25 24 28 28 N 1.31148 * 125.59830 * 179.66931 * 23 22 21 29 29 H 1.08992 * 109.47356 * 270.27579 * 1 2 3 30 30 H 1.09003 * 109.47191 * 30.27942 * 1 2 3 31 31 H 1.09005 * 109.46990 * 150.27665 * 1 2 3 32 32 H 1.09002 * 110.36847 * 37.06750 * 8 7 5 33 33 H 1.09005 * 110.45737 * 274.79985 * 8 7 5 34 34 H 1.09005 * 111.00113 * 278.93173 * 9 8 7 35 35 H 1.08998 * 111.03822 * 155.09465 * 9 8 7 36 36 H 0.96700 * 114.00311 * 179.97438 * 11 10 9 37 37 H 0.97000 * 119.99959 * 179.97438 * 15 14 12 38 38 H 1.09003 * 109.87825 * 61.59771 * 20 7 5 39 39 H 1.09001 * 109.88209 * 300.43826 * 20 7 5 40 40 H 1.07997 * 125.90362 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2800 1.0559 0.0000 4 6 3.5531 0.6198 -0.0030 5 6 4.7631 1.4690 -0.0063 6 8 5.8653 0.9565 -0.0030 7 7 4.6441 2.8115 -0.0129 8 6 3.3750 3.5616 -0.0179 9 6 3.7285 4.9432 0.5869 10 6 5.1448 5.1862 0.0018 11 8 5.0607 5.7186 -1.3216 12 6 5.9400 6.1043 0.8941 13 1 5.4858 6.5235 1.7796 14 6 7.2475 6.4089 0.5798 15 7 7.8006 5.8986 -0.4988 16 14 8.2334 7.5462 1.6861 17 1 7.3880 7.9831 2.8261 18 1 9.4252 6.8254 2.2007 19 1 8.6703 8.7348 0.9104 20 6 5.7586 3.7705 -0.0173 21 7 3.5310 -0.6956 0.0035 22 7 2.3038 -1.0884 0.0053 23 6 1.8703 -2.4207 0.0122 24 7 2.6629 -3.4966 0.0175 25 6 1.9348 -4.5831 0.0227 26 7 0.6402 -4.2209 0.0203 27 1 -0.1284 -4.8127 0.0227 28 7 0.6201 -2.8167 0.0202 29 1 -0.3633 0.0049 1.0276 30 1 -0.3634 0.8875 -0.5182 31 1 -0.3633 -0.8925 -0.5096 32 1 2.6328 3.0557 0.5996 33 1 3.0047 3.6770 -1.0366 34 1 3.7581 4.8971 1.6756 35 1 3.0298 5.7086 0.2492 36 1 5.9193 5.8889 -1.7325 37 1 8.7203 6.1132 -0.7201 38 1 6.3578 3.6382 -0.9182 39 1 6.3780 3.6230 0.8673 40 1 2.3089 -5.5962 0.0273 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363522849.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:59:22 Heat of formation + Delta-G solvation = 105.059179 kcal Electronic energy + Delta-G solvation = -28302.447947 eV Core-core repulsion = 24156.613807 eV Total energy + Delta-G solvation = -4145.834140 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.134 amu Computer time = 2.74 seconds Orbital eigenvalues (eV) -45.03526 -43.39482 -41.01879 -39.01333 -36.37278 -35.91237 -34.56453 -34.18236 -33.54028 -32.19034 -31.61888 -29.69841 -29.31018 -27.78740 -25.84668 -24.97308 -24.06461 -22.95089 -21.84480 -21.34863 -20.70735 -19.81064 -19.14447 -18.78095 -18.47029 -17.84094 -17.35898 -16.85965 -16.75519 -16.30655 -16.06211 -16.01769 -15.29405 -14.85570 -14.80163 -14.74149 -14.15985 -13.97644 -13.86244 -13.64320 -13.45204 -13.34544 -12.90149 -12.83727 -12.66507 -12.54879 -12.30366 -12.23157 -12.12385 -11.74405 -11.51099 -11.50296 -11.41218 -11.16419 -11.12965 -10.63224 -10.47143 -10.30260 -9.69039 -8.25274 -6.41326 -0.50439 0.21608 0.42178 0.78995 1.42087 1.45471 1.56507 1.60119 1.67543 1.78430 2.03016 2.39394 2.65294 2.82204 3.01117 3.13637 3.50276 3.79746 3.84089 4.10549 4.20496 4.30158 4.42118 4.53121 4.55703 4.61850 4.65554 4.67995 4.79581 4.92684 4.99827 5.04461 5.15190 5.24499 5.36316 5.45465 5.50713 5.75610 6.00473 6.04344 6.34470 6.46857 6.66373 6.76120 6.92040 7.29960 7.37997 8.81303 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.028803 B = 0.002607 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.885512 B =10735.834750 C =11287.880480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.253 3.747 3 N -0.475 5.475 4 C 0.159 3.841 5 C 0.611 3.389 6 O -0.568 6.568 7 N -0.589 5.589 8 C 0.112 3.888 9 C -0.111 4.111 10 C 0.236 3.764 11 O -0.587 6.587 12 C -0.554 4.554 13 H 0.071 0.929 14 C 0.024 3.976 15 N -0.917 5.917 16 Si 0.966 3.034 17 H -0.264 1.264 18 H -0.285 1.285 19 H -0.277 1.277 20 C 0.119 3.881 21 N -0.258 5.258 22 N -0.235 5.235 23 C 0.426 3.574 24 N -0.578 5.578 25 C 0.317 3.683 26 N -0.441 5.441 27 H 0.475 0.525 28 N -0.288 5.288 29 H 0.116 0.884 30 H 0.120 0.880 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.378 0.622 37 H 0.271 0.729 38 H 0.039 0.961 39 H 0.043 0.957 40 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.153 -21.723 1.398 31.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.021 4.021 3 N -0.202 5.202 4 C -0.122 4.122 5 C 0.395 3.605 6 O -0.446 6.446 7 N -0.321 5.321 8 C -0.009 4.009 9 C -0.149 4.149 10 C 0.195 3.805 11 O -0.395 6.395 12 C -0.592 4.592 13 H 0.089 0.911 14 C -0.177 4.177 15 N -0.557 5.557 16 Si 0.791 3.209 17 H -0.188 1.188 18 H -0.211 1.211 19 H -0.202 1.202 20 C -0.003 4.003 21 N -0.095 5.095 22 N -0.028 5.028 23 C 0.058 3.942 24 N -0.309 5.309 25 C 0.019 3.981 26 N -0.165 5.165 27 H 0.328 0.672 28 N -0.126 5.126 29 H 0.134 0.866 30 H 0.139 0.861 31 H 0.126 0.874 32 H 0.128 0.872 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.113 0.887 36 H 0.228 0.772 37 H 0.080 0.920 38 H 0.057 0.943 39 H 0.062 0.938 40 H 0.310 0.690 Dipole moment (debyes) X Y Z Total from point charges -21.757 -21.632 1.420 30.713 hybrid contribution 1.579 -0.068 0.136 1.586 sum -20.178 -21.700 1.555 29.672 Atomic orbital electron populations 1.20807 0.78239 1.06944 1.06714 1.26360 0.99551 0.79417 0.96773 1.71495 0.99345 1.27505 1.21849 1.23466 0.93178 0.88356 1.07187 1.16194 0.85273 0.80967 0.78054 1.90771 1.27286 1.73693 1.52849 1.48509 1.11399 1.03391 1.68758 1.22625 0.84715 0.91548 1.01987 1.22801 0.96132 0.95731 1.00246 1.19700 0.92545 0.86753 0.81492 1.86086 1.35845 1.86138 1.31432 1.21851 0.97600 1.29342 1.10390 0.91102 1.25857 0.98518 0.96787 0.96523 1.69760 1.14985 1.44668 1.26264 0.85375 0.78142 0.78375 0.78960 1.18770 1.21087 1.20225 1.22775 0.87951 0.90182 0.99406 1.74583 1.01526 1.13611 1.19748 1.43275 1.03658 1.04368 1.51486 1.19501 0.88443 0.83071 1.03234 1.70288 1.36494 0.97248 1.26900 1.27247 0.79697 1.00540 0.90596 1.47999 1.10775 1.02762 1.54918 0.67188 1.78111 1.14000 0.92437 1.28002 0.86592 0.86143 0.87395 0.87244 0.91279 0.89692 0.88652 0.77236 0.91965 0.94300 0.93816 0.68982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.96 9.84 71.24 0.70 -0.25 16 2 C 0.25 6.81 7.94 138.07 1.10 7.90 16 3 N -0.48 -16.00 8.46 -180.71 -1.53 -17.53 16 4 C 0.16 6.59 7.79 137.09 1.07 7.66 16 5 C 0.61 29.67 7.86 86.78 0.68 30.35 16 6 O -0.57 -31.63 17.41 -3.91 -0.07 -31.70 16 7 N -0.59 -27.69 3.33 -815.21 -2.71 -30.40 16 8 C 0.11 4.40 6.13 86.86 0.53 4.93 16 9 C -0.11 -4.57 6.22 31.98 0.20 -4.37 16 10 C 0.24 11.92 0.86 -10.36 -0.01 11.92 16 11 O -0.59 -30.82 13.09 -148.98 -1.95 -32.77 16 12 C -0.55 -29.67 8.12 25.60 0.21 -29.46 16 13 H 0.07 3.68 7.77 -2.91 -0.02 3.65 16 14 C 0.02 1.27 5.26 84.65 0.45 1.72 16 15 N -0.92 -51.04 10.97 21.45 0.24 -50.80 16 16 Si 0.97 42.91 29.54 68.60 2.03 44.93 16 17 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 18 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 19 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 20 C 0.12 6.32 5.39 86.72 0.47 6.79 16 21 N -0.26 -10.40 12.03 -52.42 -0.63 -11.03 16 22 N -0.24 -7.33 3.52 -188.46 -0.66 -8.00 16 23 C 0.43 10.32 8.74 260.69 2.28 12.60 16 24 N -0.58 -12.73 11.20 -200.95 -2.25 -14.98 16 25 C 0.32 2.00 13.12 180.37 2.37 4.37 16 26 N -0.44 -1.87 7.44 -60.51 -0.45 -2.32 16 27 H 0.47 -2.73 8.96 -213.10 -1.91 -4.64 16 28 N -0.29 -4.34 10.41 -58.74 -0.61 -4.95 16 29 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.11 1.27 6.33 -2.38 -0.02 1.25 16 32 H 0.11 3.79 6.14 -2.39 -0.01 3.78 16 33 H 0.07 2.67 8.14 -2.38 -0.02 2.65 16 34 H 0.08 3.32 8.04 -2.38 -0.02 3.30 16 35 H 0.10 3.57 8.14 -2.39 -0.02 3.55 16 36 H 0.38 20.65 7.17 -74.06 -0.53 20.12 16 37 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 38 H 0.04 2.25 8.01 -2.39 -0.02 2.23 16 39 H 0.04 2.50 7.82 -2.39 -0.02 2.48 16 40 H 0.30 -2.06 8.06 -2.91 -0.02 -2.08 16 Total: -1.00 -87.00 345.17 0.13 -86.87 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: -1.30 Total: 18.51 kcal Atomic # 6 Polarization: 44.12 SS G_CDS: 10.04 Total: 54.15 kcal Atomic # 7 Polarization: -131.39 SS G_CDS: -8.61 Total: -140.00 kcal Atomic # 8 Polarization: -62.45 SS G_CDS: -2.02 Total: -64.47 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.93 kcal Total: -87.00 0.13 -86.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363522849.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.927 kcal (2) G-P(sol) polarization free energy of solvation -86.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.74 seconds