Wall clock time and date at job start Tue Mar 31 2020 18:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47262 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46882 * 119.99668 * 8 6 4 11 11 H 1.48501 * 109.47152 * 239.99726 * 8 6 4 12 12 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 13 13 C 1.46509 * 119.99920 * 60.00125 * 12 2 1 14 14 S 1.65602 * 120.00679 * 239.99966 * 12 2 1 15 15 O 1.42100 * 106.40635 * 203.54125 * 14 12 2 16 16 O 1.42101 * 106.39740 * 336.46506 * 14 12 2 17 17 N 1.65609 * 107.21523 * 89.99672 * 14 12 2 18 18 C 1.46498 * 119.99588 * 65.00640 * 17 14 12 19 19 H 1.09003 * 109.47408 * 24.99835 * 18 17 14 20 20 C 1.53000 * 109.47007 * 264.99853 * 18 17 14 21 21 C 1.50694 * 109.47207 * 144.99658 * 18 17 14 22 22 N 1.30331 * 126.35897 * 45.02323 * 21 18 17 23 23 N 1.28540 * 109.99847 * 180.02562 * 22 21 18 24 24 C 1.31035 * 109.85521 * 0.02562 * 23 22 21 25 25 O 1.35538 * 126.44311 * 180.02562 * 24 23 22 26 26 N 1.36312 * 107.10379 * 359.73457 * 24 23 22 27 27 C 1.46504 * 127.11920 * 180.28529 * 26 24 23 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 31 31 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 32 32 H 1.09003 * 109.46975 * 89.99812 * 13 12 2 33 33 H 1.08995 * 109.47277 * 209.99863 * 13 12 2 34 34 H 1.09003 * 109.46743 * 330.00349 * 13 12 2 35 35 H 0.96997 * 120.00007 * 245.00053 * 17 14 12 36 36 H 1.09000 * 109.47619 * 60.00439 * 20 18 17 37 37 H 1.09007 * 109.46705 * 179.97438 * 20 18 17 38 38 H 1.08998 * 109.46682 * 299.99867 * 20 18 17 39 39 H 0.96696 * 113.99961 * 89.97356 * 25 24 23 40 40 H 1.09000 * 109.46574 * 270.15722 * 27 26 24 41 41 H 1.08998 * 109.46925 * 30.14846 * 27 26 24 42 42 H 1.08993 * 109.47347 * 150.15347 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.1456 -2.2877 -3.6037 10 1 1.1661 -1.5867 -4.8160 11 1 3.1467 -0.1874 -4.8164 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0932 1.4281 14 16 2.9704 0.1142 2.2863 15 8 3.7118 -0.8788 2.9816 16 8 3.5794 1.1830 1.5749 17 7 1.9606 0.8092 3.3998 18 6 1.1509 -0.0351 4.2817 19 1 1.6296 -1.0080 4.3935 20 6 -0.2415 -0.2186 3.6747 21 6 1.0275 0.6221 5.6321 22 7 0.7643 1.8783 5.8590 23 7 0.7329 2.0992 7.1248 24 6 0.9765 0.9889 7.7766 25 8 1.0241 0.8394 9.1229 26 7 1.1664 0.0112 6.8460 27 6 1.4611 -1.4020 7.0958 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 0.7089 1.1612 -3.4844 32 1 2.4157 -2.7377 0.9718 33 1 1.6238 -2.2851 2.5002 34 1 0.6904 -2.3002 0.9847 35 1 1.9054 1.7752 3.4681 36 1 -0.1524 -0.6941 2.6979 37 1 -0.8438 -0.8472 4.3307 38 1 -0.7202 0.7543 3.5629 39 1 0.1739 0.6129 9.5238 40 1 2.5405 -1.5443 7.1478 41 1 1.0086 -1.7061 8.0397 42 1 1.0534 -2.0069 6.2859 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363999358.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:18 Heat of formation + Delta-G solvation = -22.585545 kcal Electronic energy + Delta-G solvation = -28219.549986 eV Core-core repulsion = 24171.331955 eV Total energy + Delta-G solvation = -4048.218030 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.130 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.33923 -38.13453 -36.95461 -36.52863 -36.07548 -35.31506 -35.16722 -32.61713 -30.52017 -29.16481 -29.03646 -27.99725 -25.67653 -25.18126 -24.23302 -22.63951 -21.03251 -20.83767 -19.27840 -18.93563 -17.71384 -17.30952 -16.95287 -16.57610 -16.45899 -15.82430 -15.26111 -15.15192 -14.62169 -14.40251 -13.97431 -13.56242 -13.51617 -13.33946 -13.28098 -12.92019 -12.84592 -12.37533 -12.06213 -11.95602 -11.84399 -11.66294 -11.62582 -11.43133 -11.32609 -11.24319 -11.00094 -10.82853 -10.55323 -10.51344 -10.46509 -10.28504 -10.07001 -9.66670 -9.33996 -9.24033 -8.47066 -8.03890 -6.08244 -4.15006 1.00936 1.28241 1.77395 2.46654 3.27022 3.34605 3.36158 3.38432 3.40292 3.84653 4.03948 4.16375 4.39183 4.48135 4.64034 4.82534 4.88992 4.96402 5.06362 5.23295 5.29916 5.36107 5.47912 5.54546 5.68151 5.91139 6.02167 6.09421 6.16814 6.31815 6.55460 6.75496 6.75612 6.94416 6.99132 7.07518 7.43181 7.61228 7.77485 8.03115 8.25764 8.39106 8.87461 9.51073 10.97319 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.026627 B = 0.003277 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.302048 B = 8542.761855 C = 8682.815611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.268 3.732 3 H 0.061 0.939 4 C -0.520 4.520 5 H 0.063 0.937 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.987 5.987 13 C 0.107 3.893 14 S 2.778 3.222 15 O -0.997 6.997 16 O -0.965 6.965 17 N -1.121 6.121 18 C 0.246 3.754 19 H 0.103 0.897 20 C -0.172 4.172 21 C 0.191 3.809 22 N -0.262 5.262 23 N -0.280 5.280 24 C 0.343 3.657 25 O -0.435 6.435 26 N -0.482 5.482 27 C 0.068 3.932 28 H 0.033 0.967 29 H 0.093 0.907 30 H 0.015 0.985 31 H 0.263 0.737 32 H 0.051 0.949 33 H 0.045 0.955 34 H 0.075 0.925 35 H 0.423 0.577 36 H 0.090 0.910 37 H 0.064 0.936 38 H 0.078 0.922 39 H 0.404 0.596 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.123 -7.070 19.370 21.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.165 3.835 3 H 0.078 0.922 4 C -0.560 4.560 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.725 3.275 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.831 5.831 13 C -0.040 4.040 14 S 2.787 3.213 15 O -0.980 6.980 16 O -0.949 6.949 17 N -0.880 5.880 18 C 0.135 3.865 19 H 0.121 0.879 20 C -0.232 4.232 21 C -0.078 4.078 22 N -0.104 5.104 23 N -0.131 5.131 24 C 0.039 3.961 25 O -0.234 6.234 26 N -0.185 5.185 27 C -0.074 4.074 28 H 0.052 0.948 29 H 0.111 0.889 30 H 0.034 0.966 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.093 0.907 35 H 0.258 0.742 36 H 0.109 0.891 37 H 0.083 0.917 38 H 0.097 0.903 39 H 0.261 0.739 40 H 0.107 0.893 41 H 0.111 0.889 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.921 -5.556 19.095 20.270 hybrid contribution -0.319 -1.616 -0.203 1.659 sum -4.240 -7.171 18.892 20.647 Atomic orbital electron populations 1.22164 0.98150 0.99653 1.00984 1.18765 0.91355 0.93071 0.80266 0.92178 1.21359 1.31605 1.13020 0.90004 0.91891 1.24903 0.94971 0.94997 0.98995 1.69862 1.36492 1.22664 1.23708 0.86457 0.78579 0.79662 0.82780 1.19772 1.21044 1.20924 1.57724 1.69993 1.19641 1.35735 1.21207 1.02083 0.82296 0.98404 1.02050 0.73559 0.73273 0.72444 1.93531 1.68987 1.60825 1.74669 1.93637 1.73916 1.55841 1.71469 1.56376 1.61584 1.18222 1.51801 1.18881 0.94207 0.92392 0.81011 0.87942 1.22475 0.94079 1.04210 1.02409 1.24808 1.03552 0.91443 0.87981 1.74195 1.17402 1.11848 1.06983 1.74642 1.19462 1.19913 0.99112 1.22038 1.04913 0.85210 0.83959 1.84940 1.37141 1.90862 1.10432 1.46658 1.53867 1.11006 1.06975 1.22196 1.03977 0.76913 1.04350 0.94802 0.88860 0.96550 0.92727 0.93007 0.93669 0.90661 0.74210 0.89120 0.91705 0.90327 0.73873 0.89251 0.88887 0.88425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 8.66 37.16 0.32 -2.83 16 2 C 0.27 6.19 2.62 -69.09 -0.18 6.01 16 3 H 0.06 1.57 6.91 -51.93 -0.36 1.21 16 4 C -0.52 -13.49 8.37 -34.44 -0.29 -13.78 16 5 H 0.06 1.63 7.65 -52.49 -0.40 1.23 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -24.21 11.32 55.43 0.63 -23.58 16 8 Si 0.90 20.72 29.54 -169.99 -5.02 15.69 16 9 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 12 N -0.99 -18.77 2.79 -115.85 -0.32 -19.09 16 13 C 0.11 1.65 8.39 59.85 0.50 2.15 16 14 S 2.78 51.93 6.08 -107.50 -0.65 51.28 16 15 O -1.00 -19.23 16.55 -57.17 -0.95 -20.18 16 16 O -0.96 -22.16 16.70 -57.17 -0.95 -23.12 16 17 N -1.12 -16.71 5.52 -5.88 -0.03 -16.74 16 18 C 0.25 2.96 3.26 -69.09 -0.23 2.73 16 19 H 0.10 1.06 6.21 -51.93 -0.32 0.74 16 20 C -0.17 -1.84 9.49 37.16 0.35 -1.48 16 21 C 0.19 2.40 6.88 -154.12 -1.06 1.34 16 22 N -0.26 -3.95 11.95 32.97 0.39 -3.56 16 23 N -0.28 -4.13 12.22 29.65 0.36 -3.77 16 24 C 0.34 3.89 9.22 -88.76 -0.82 3.07 16 25 O -0.43 -3.43 13.62 -18.31 -0.25 -3.68 16 26 N -0.48 -4.86 3.20 -122.49 -0.39 -5.25 16 27 C 0.07 0.38 10.86 59.85 0.65 1.03 16 28 H 0.03 0.65 6.66 -51.93 -0.35 0.31 16 29 H 0.09 2.24 6.07 -51.93 -0.32 1.93 16 30 H 0.02 0.29 7.41 -51.93 -0.38 -0.10 16 31 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.04 0.54 7.35 -51.93 -0.38 0.16 16 34 H 0.07 1.11 6.43 -51.93 -0.33 0.77 16 35 H 0.42 6.25 8.63 -34.48 -0.30 5.95 16 36 H 0.09 1.04 5.56 -51.93 -0.29 0.75 16 37 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 38 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.40 0.87 9.06 45.56 0.41 1.28 16 40 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.10 0.37 7.51 -51.93 -0.39 -0.02 16 LS Contribution 358.33 15.07 5.40 5.40 Total: -1.00 -35.93 358.33 -7.29 -43.22 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -4.66 Total: 3.53 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -0.84 Total: -0.16 kcal Atomic # 7 Polarization: -72.63 SS G_CDS: 0.64 Total: -71.99 kcal Atomic # 8 Polarization: -44.82 SS G_CDS: -2.15 Total: -46.97 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: 51.93 SS G_CDS: -0.65 Total: 51.28 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.93 -7.29 -43.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363999358.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.632 kcal (2) G-P(sol) polarization free energy of solvation -35.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds