Wall clock time and date at job start Tue Mar 31 2020 18:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47262 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46882 * 119.99668 * 8 6 4 11 11 H 1.48501 * 109.47152 * 239.99726 * 8 6 4 12 12 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 13 13 C 1.46509 * 119.99920 * 60.00125 * 12 2 1 14 14 S 1.65602 * 120.00679 * 239.99966 * 12 2 1 15 15 O 1.42100 * 106.40635 * 203.54125 * 14 12 2 16 16 O 1.42101 * 106.39740 * 336.46506 * 14 12 2 17 17 N 1.65609 * 107.21523 * 89.99672 * 14 12 2 18 18 C 1.46498 * 119.99588 * 65.00640 * 17 14 12 19 19 H 1.09003 * 109.47408 * 24.99835 * 18 17 14 20 20 C 1.53000 * 109.47007 * 264.99853 * 18 17 14 21 21 C 1.50694 * 109.47207 * 144.99658 * 18 17 14 22 22 N 1.30331 * 126.35897 * 45.02323 * 21 18 17 23 23 N 1.28540 * 109.99847 * 180.02562 * 22 21 18 24 24 C 1.31035 * 109.85521 * 0.02562 * 23 22 21 25 25 O 1.35538 * 126.44311 * 180.02562 * 24 23 22 26 26 N 1.36312 * 107.10379 * 359.73457 * 24 23 22 27 27 C 1.46504 * 127.11920 * 180.28529 * 26 24 23 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 31 31 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 32 32 H 1.09003 * 109.46975 * 89.99812 * 13 12 2 33 33 H 1.08995 * 109.47277 * 209.99863 * 13 12 2 34 34 H 1.09003 * 109.46743 * 330.00349 * 13 12 2 35 35 H 0.96997 * 120.00007 * 245.00053 * 17 14 12 36 36 H 1.09000 * 109.47619 * 60.00439 * 20 18 17 37 37 H 1.09007 * 109.46705 * 179.97438 * 20 18 17 38 38 H 1.08998 * 109.46682 * 299.99867 * 20 18 17 39 39 H 0.96696 * 113.99961 * 89.97356 * 25 24 23 40 40 H 1.09000 * 109.46574 * 270.15722 * 27 26 24 41 41 H 1.08998 * 109.46925 * 30.14846 * 27 26 24 42 42 H 1.08993 * 109.47347 * 150.15347 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.1456 -2.2877 -3.6037 10 1 1.1661 -1.5867 -4.8160 11 1 3.1467 -0.1874 -4.8164 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0932 1.4281 14 16 2.9704 0.1142 2.2863 15 8 3.7118 -0.8788 2.9816 16 8 3.5794 1.1830 1.5749 17 7 1.9606 0.8092 3.3998 18 6 1.1509 -0.0351 4.2817 19 1 1.6296 -1.0080 4.3935 20 6 -0.2415 -0.2186 3.6747 21 6 1.0275 0.6221 5.6321 22 7 0.7643 1.8783 5.8590 23 7 0.7329 2.0992 7.1248 24 6 0.9765 0.9889 7.7766 25 8 1.0241 0.8394 9.1229 26 7 1.1664 0.0112 6.8460 27 6 1.4611 -1.4020 7.0958 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 0.7089 1.1612 -3.4844 32 1 2.4157 -2.7377 0.9718 33 1 1.6238 -2.2851 2.5002 34 1 0.6904 -2.3002 0.9847 35 1 1.9054 1.7752 3.4681 36 1 -0.1524 -0.6941 2.6979 37 1 -0.8438 -0.8472 4.3307 38 1 -0.7202 0.7543 3.5629 39 1 0.1739 0.6129 9.5238 40 1 2.5405 -1.5443 7.1478 41 1 1.0086 -1.7061 8.0397 42 1 1.0534 -2.0069 6.2859 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363999358.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:17 Heat of formation + Delta-G solvation = -54.588515 kcal Electronic energy + Delta-G solvation = -28220.937739 eV Core-core repulsion = 24171.331955 eV Total energy + Delta-G solvation = -4049.605783 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.130 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.20370 -38.84450 -38.40774 -37.99663 -37.36185 -36.92190 -35.92756 -34.48903 -31.56516 -30.85648 -29.97713 -28.55031 -27.23315 -26.93679 -25.15922 -23.44369 -22.54366 -21.94225 -20.40884 -19.89111 -19.01032 -18.56654 -18.38557 -17.99274 -17.41524 -17.08672 -16.88174 -16.17375 -15.83838 -15.48057 -15.15940 -14.88083 -14.69307 -14.50991 -14.19779 -13.80047 -13.74383 -13.57154 -13.44037 -13.38876 -13.22041 -13.11857 -12.93633 -12.91245 -12.78194 -12.62884 -12.53372 -12.40997 -12.13550 -12.06807 -11.84984 -11.35083 -11.26318 -11.08721 -10.81071 -10.46250 -10.25042 -9.63072 -8.07221 -6.20273 -0.42669 0.46962 1.00678 1.43672 1.47460 1.54923 1.56978 2.01460 2.45965 2.59597 2.67394 3.05764 3.21625 3.41138 3.53595 3.74303 3.95636 4.09116 4.19121 4.31878 4.41859 4.61724 4.65140 4.74108 4.80208 4.86060 4.92927 4.98329 5.09796 5.11422 5.22825 5.28900 5.38272 5.49874 5.68059 5.72075 5.92475 5.97130 6.21959 6.36830 6.41762 6.88404 7.48804 7.49167 8.96713 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.026627 B = 0.003277 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.302048 B = 8542.761855 C = 8682.815611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.274 3.726 3 H 0.021 0.979 4 C -0.534 4.534 5 H 0.059 0.941 6 C 0.017 3.983 7 N -0.914 5.914 8 Si 0.953 3.047 9 H -0.268 1.268 10 H -0.276 1.276 11 H -0.289 1.289 12 N -0.990 5.990 13 C 0.096 3.904 14 S 2.797 3.203 15 O -1.002 7.002 16 O -1.015 7.015 17 N -1.115 6.115 18 C 0.242 3.758 19 H 0.125 0.875 20 C -0.168 4.168 21 C 0.186 3.814 22 N -0.298 5.298 23 N -0.328 5.328 24 C 0.358 3.642 25 O -0.433 6.433 26 N -0.474 5.474 27 C 0.054 3.946 28 H 0.049 0.951 29 H 0.062 0.938 30 H 0.041 0.959 31 H 0.263 0.737 32 H 0.043 0.957 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.423 0.577 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.064 0.936 39 H 0.431 0.569 40 H 0.089 0.911 41 H 0.123 0.877 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.913 -9.614 21.126 23.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.170 3.830 3 H 0.039 0.961 4 C -0.574 4.574 5 H 0.077 0.923 6 C -0.183 4.183 7 N -0.553 5.553 8 Si 0.779 3.221 9 H -0.193 1.193 10 H -0.201 1.201 11 H -0.215 1.215 12 N -0.833 5.833 13 C -0.049 4.049 14 S 2.806 3.194 15 O -0.985 6.985 16 O -0.999 6.999 17 N -0.876 5.876 18 C 0.132 3.868 19 H 0.143 0.857 20 C -0.228 4.228 21 C -0.084 4.084 22 N -0.140 5.140 23 N -0.179 5.179 24 C 0.052 3.948 25 O -0.236 6.236 26 N -0.176 5.176 27 C -0.087 4.087 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.259 0.741 36 H 0.104 0.896 37 H 0.116 0.884 38 H 0.083 0.917 39 H 0.292 0.708 40 H 0.108 0.892 41 H 0.142 0.858 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.727 -8.153 20.890 22.917 hybrid contribution -0.058 -0.872 -0.553 1.034 sum -4.786 -9.024 20.337 22.758 Atomic orbital electron populations 1.21943 0.96411 1.00537 1.00678 1.18400 0.92506 0.91170 0.80944 0.96073 1.21704 1.31366 1.12935 0.91391 0.92305 1.25609 0.95335 0.95709 1.01607 1.69988 1.37437 1.23755 1.24139 0.85593 0.78201 0.78598 0.79718 1.19269 1.20124 1.21489 1.57523 1.69860 1.21109 1.34773 1.21502 1.02236 0.79920 1.01231 1.01250 0.73459 0.72382 0.72308 1.93514 1.69455 1.60930 1.74603 1.93568 1.75617 1.57656 1.73062 1.56030 1.61628 1.18462 1.51471 1.19206 0.94721 0.92489 0.80386 0.85726 1.22450 0.93472 1.04106 1.02751 1.24747 1.03689 0.91155 0.88845 1.74085 1.18798 1.13547 1.07602 1.74520 1.21982 1.22066 0.99381 1.22041 1.02846 0.84866 0.85067 1.84911 1.39306 1.90839 1.08543 1.46816 1.52809 1.12360 1.05663 1.22666 1.04564 0.74491 1.06945 0.93203 0.91974 0.94001 0.92798 0.93872 0.89559 0.89651 0.74146 0.89649 0.88395 0.91709 0.70755 0.89216 0.85838 0.86297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.65 8.66 71.98 0.62 -5.03 16 2 C 0.27 12.76 2.62 44.24 0.12 12.87 16 3 H 0.02 1.16 6.91 -2.39 -0.02 1.14 16 4 C -0.53 -27.87 8.37 25.60 0.21 -27.65 16 5 H 0.06 3.04 7.65 -2.91 -0.02 3.02 16 6 C 0.02 0.91 5.30 84.66 0.45 1.36 16 7 N -0.91 -50.66 11.32 21.45 0.24 -50.42 16 8 Si 0.95 42.57 29.54 68.60 2.03 44.60 16 9 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 10 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 11 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 12 N -0.99 -36.78 2.79 -520.44 -1.45 -38.23 16 13 C 0.10 2.75 8.39 127.77 1.07 3.82 16 14 S 2.80 103.54 6.08 -56.49 -0.34 103.20 16 15 O -1.00 -37.11 16.55 -128.00 -2.12 -39.23 16 16 O -1.01 -48.07 16.70 -128.00 -2.14 -50.20 16 17 N -1.12 -32.43 5.52 -172.53 -0.95 -33.39 16 18 C 0.24 5.25 3.26 44.24 0.14 5.40 16 19 H 0.13 2.12 6.21 -2.39 -0.01 2.10 16 20 C -0.17 -3.13 9.49 71.98 0.68 -2.45 16 21 C 0.19 4.36 6.88 137.67 0.95 5.30 16 22 N -0.30 -8.89 11.95 -49.61 -0.59 -9.48 16 23 N -0.33 -9.52 12.22 -173.67 -2.12 -11.64 16 24 C 0.36 7.42 9.22 179.70 1.66 9.08 16 25 O -0.43 -5.66 13.62 -88.42 -1.20 -6.86 16 26 N -0.47 -8.27 3.20 -652.24 -2.09 -10.36 16 27 C 0.05 0.38 10.86 127.77 1.39 1.77 16 28 H 0.05 1.86 6.66 -2.39 -0.02 1.84 16 29 H 0.06 3.01 6.07 -2.39 -0.01 2.99 16 30 H 0.04 1.47 7.41 -2.38 -0.02 1.46 16 31 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 32 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.09 1.73 7.35 -2.39 -0.02 1.71 16 34 H 0.08 2.27 6.43 -2.39 -0.02 2.26 16 35 H 0.42 12.68 8.63 -96.74 -0.84 11.84 16 36 H 0.08 1.70 5.56 -2.39 -0.01 1.69 16 37 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 38 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.43 0.47 9.06 -74.06 -0.67 -0.21 16 40 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.12 0.12 8.14 -2.39 -0.02 0.10 16 42 H 0.12 0.34 7.51 -2.39 -0.02 0.32 16 Total: -1.00 -80.24 358.33 -3.87 -84.11 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -0.42 Total: 13.44 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: 7.29 Total: 4.48 kcal Atomic # 7 Polarization: -146.56 SS G_CDS: -6.97 Total: -153.53 kcal Atomic # 8 Polarization: -90.84 SS G_CDS: -5.46 Total: -96.30 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Atomic # 16 Polarization: 103.54 SS G_CDS: -0.34 Total: 103.20 kcal Total: -80.24 -3.87 -84.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363999358.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.517 kcal (2) G-P(sol) polarization free energy of solvation -80.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds