Wall clock time and date at job start Tue Mar 31 2020 18:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46930 * 2 1 4 4 N 1.46506 * 109.47035 * 119.99770 * 2 1 3 5 5 S 1.65593 * 120.00141 * 265.00061 * 4 2 1 6 6 O 1.42095 * 106.40378 * 178.54407 * 5 4 2 7 7 O 1.42101 * 106.40474 * 311.46163 * 5 4 2 8 8 N 1.65606 * 107.21831 * 65.00076 * 5 4 2 9 9 C 1.46496 * 119.99908 * 270.00110 * 8 5 4 10 10 C 1.46500 * 119.99560 * 90.00156 * 8 5 4 11 11 H 1.08992 * 109.47233 * 359.97438 * 10 8 5 12 12 C 1.53005 * 109.47155 * 120.00380 * 10 8 5 13 13 C 1.50700 * 109.46716 * 240.00078 * 10 8 5 14 14 H 1.08002 * 120.00064 * 359.97438 * 13 10 8 15 15 C 1.37883 * 119.99797 * 180.02562 * 13 10 8 16 16 N 1.31509 * 119.99866 * 359.97438 * 15 13 10 17 17 Si 1.86801 * 119.99808 * 179.97438 * 15 13 10 18 18 H 1.48499 * 109.47063 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47035 * 119.99519 * 17 15 13 20 20 H 1.48496 * 109.47011 * 239.99544 * 17 15 13 21 21 C 1.50703 * 109.47292 * 240.00025 * 2 1 3 22 22 N 1.30324 * 126.35631 * 285.02029 * 21 2 1 23 23 N 1.28539 * 109.99404 * 179.97438 * 22 21 2 24 24 C 1.31034 * 109.85662 * 0.02562 * 23 22 21 25 25 O 1.35532 * 126.44924 * 180.02562 * 24 23 22 26 26 N 1.36315 * 107.10425 * 359.73310 * 24 23 22 27 27 C 1.46504 * 127.12266 * 180.28662 * 26 24 23 28 28 H 1.09004 * 109.47059 * 299.99602 * 1 2 3 29 29 H 1.08992 * 109.47060 * 60.00086 * 1 2 3 30 30 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 31 31 H 0.97003 * 119.99441 * 85.00818 * 4 2 1 32 32 H 1.08997 * 109.47390 * 90.00238 * 9 8 5 33 33 H 1.09007 * 109.46752 * 210.00252 * 9 8 5 34 34 H 1.09002 * 109.47073 * 329.99658 * 9 8 5 35 35 H 1.09002 * 109.46886 * 299.99371 * 12 10 8 36 36 H 1.08998 * 109.47023 * 59.99086 * 12 10 8 37 37 H 1.08997 * 109.46870 * 179.97438 * 12 10 8 38 38 H 0.97006 * 119.99249 * 180.02562 * 16 15 13 39 39 H 0.96711 * 113.99961 * 89.96904 * 25 24 23 40 40 H 1.08999 * 109.46400 * 270.15256 * 27 26 24 41 41 H 1.08998 * 109.46901 * 30.14788 * 27 26 24 42 42 H 1.08995 * 109.47715 * 150.15057 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 16 2.4122 0.1772 2.5505 6 8 2.8124 -0.7697 3.5315 7 8 3.2436 1.2443 2.1156 8 7 1.0167 0.8704 3.1115 9 6 0.6184 2.1993 2.6409 10 6 0.1807 0.1546 4.0784 11 1 0.6344 -0.8096 4.3074 12 6 0.0627 0.9808 5.3608 13 6 -1.1908 -0.0625 3.4928 14 1 -1.4171 0.2971 2.4999 15 6 -2.1570 -0.7194 4.2250 16 7 -1.8815 -1.1568 5.4343 17 14 -3.8572 -0.9879 3.4994 18 1 -3.9108 -0.4046 2.1348 19 1 -4.1403 -2.4440 3.4272 20 1 -4.8722 -0.3283 4.3594 21 6 2.0324 -0.7104 -1.2305 22 7 2.0335 -1.9978 -1.4329 23 7 2.5326 -2.2607 -2.5879 24 6 2.8790 -1.1478 -3.1868 25 8 3.4374 -1.0353 -4.4166 26 7 2.5659 -0.1241 -2.3429 27 6 2.7631 1.3082 -2.5790 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 2.1111 -1.6562 1.1949 32 1 -0.0046 2.0984 1.7523 33 1 0.0555 2.7082 3.4235 34 1 1.5080 2.7801 2.3970 35 1 1.0547 1.1379 5.7844 36 1 -0.3912 1.9449 5.1314 37 1 -0.5597 0.4484 6.0800 38 1 -2.5612 -1.6193 5.9492 39 1 2.7947 -0.9466 -5.1338 40 1 3.7493 1.6031 -2.2203 41 1 2.6884 1.5141 -3.6468 42 1 1.9986 1.8731 -2.0458 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363999363.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:22 Heat of formation + Delta-G solvation = -22.085961 kcal Electronic energy + Delta-G solvation = -28429.712076 eV Core-core repulsion = 24381.515709 eV Total energy + Delta-G solvation = -4048.196367 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.130 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.25488 -38.06282 -36.92378 -36.46789 -36.05169 -35.35073 -35.08527 -32.63658 -30.41373 -29.20090 -28.84111 -27.92513 -25.64331 -25.21093 -24.09567 -22.55901 -20.95244 -20.80160 -19.23065 -18.91240 -17.63634 -17.24208 -16.92214 -16.61374 -16.27272 -15.88764 -15.29281 -15.08237 -14.56769 -14.33920 -13.88981 -13.65170 -13.48014 -13.24946 -13.23674 -12.84916 -12.79572 -12.12491 -12.05180 -11.87292 -11.83329 -11.62434 -11.55245 -11.38695 -11.26461 -11.20815 -11.02490 -10.84993 -10.48611 -10.46017 -10.40563 -10.28396 -10.06736 -9.57270 -9.26254 -9.18414 -8.49937 -8.03604 -6.10733 -4.19188 1.06764 1.35598 1.85034 2.55441 3.23463 3.30958 3.33103 3.38805 3.45786 3.95414 4.05524 4.23249 4.34355 4.58754 4.70517 4.85410 5.01167 5.05127 5.17177 5.20712 5.44838 5.45268 5.61225 5.62212 5.86668 5.97555 6.13348 6.19873 6.22186 6.51615 6.60114 6.80303 6.83627 7.01254 7.07077 7.17552 7.46517 7.61178 7.76403 8.01975 8.23052 8.47989 8.83433 9.47516 10.94422 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014487 B = 0.004296 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.276318 B = 6515.825257 C = 7513.568871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.249 3.751 3 H 0.101 0.899 4 N -1.116 6.116 5 S 2.782 3.218 6 O -0.972 6.972 7 O -1.000 7.000 8 N -0.987 5.987 9 C 0.093 3.907 10 C 0.268 3.732 11 H 0.060 0.940 12 C -0.146 4.146 13 C -0.524 4.524 14 H 0.066 0.934 15 C 0.065 3.935 16 N -0.886 5.886 17 Si 0.895 3.105 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.285 1.285 21 C 0.193 3.807 22 N -0.261 5.261 23 N -0.281 5.281 24 C 0.341 3.659 25 O -0.435 6.435 26 N -0.482 5.482 27 C 0.069 3.931 28 H 0.100 0.900 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.424 0.576 32 H 0.045 0.955 33 H 0.078 0.922 34 H 0.061 0.939 35 H 0.012 0.988 36 H 0.033 0.967 37 H 0.093 0.907 38 H 0.263 0.737 39 H 0.404 0.596 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.999 8.017 -16.111 18.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.138 3.862 3 H 0.119 0.881 4 N -0.875 5.875 5 S 2.791 3.209 6 O -0.956 6.956 7 O -0.984 6.984 8 N -0.831 5.831 9 C -0.054 4.054 10 C 0.165 3.835 11 H 0.078 0.922 12 C -0.206 4.206 13 C -0.564 4.564 14 H 0.084 0.916 15 C -0.138 4.138 16 N -0.524 5.524 17 Si 0.723 3.277 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.211 1.211 21 C -0.076 4.076 22 N -0.104 5.104 23 N -0.131 5.131 24 C 0.036 3.964 25 O -0.234 6.234 26 N -0.186 5.186 27 C -0.074 4.074 28 H 0.119 0.881 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.258 0.742 32 H 0.063 0.937 33 H 0.097 0.903 34 H 0.080 0.920 35 H 0.031 0.969 36 H 0.052 0.948 37 H 0.112 0.888 38 H 0.073 0.927 39 H 0.261 0.739 40 H 0.107 0.893 41 H 0.110 0.890 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.196 6.723 -15.210 17.746 hybrid contribution -1.503 0.835 -1.314 2.164 sum 4.693 7.558 -16.524 18.767 Atomic orbital electron populations 1.22549 0.91798 1.05253 1.03857 1.18863 0.95192 0.93862 0.78327 0.88102 1.56168 1.83494 1.20875 1.26931 1.01833 0.73632 0.72947 0.72485 1.93617 1.81641 1.62946 1.57430 1.93521 1.65867 1.56093 1.82891 1.57694 1.42951 1.26149 1.56265 1.21383 0.99907 0.83970 1.00117 1.18768 0.89601 0.90872 0.84266 0.92189 1.22073 0.98556 0.99644 1.00287 1.21412 0.95861 1.37282 1.01795 0.91594 1.24912 0.98713 0.95319 0.94825 1.69885 1.34203 1.38126 1.10157 0.86510 0.84170 0.77979 0.79088 1.19809 1.20994 1.21140 1.24872 1.00271 0.91355 0.91067 1.74211 1.16455 1.10781 1.08926 1.74639 1.15139 1.20424 1.02940 1.22038 1.01608 0.84149 0.88561 1.84935 1.33599 1.93871 1.11015 1.46652 1.46949 1.09275 1.15690 1.22182 1.04714 0.76330 1.04157 0.88139 0.92166 0.90248 0.74150 0.93673 0.90301 0.92046 0.96856 0.94810 0.88818 0.92696 0.73943 0.89332 0.88962 0.88417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.29 9.50 37.16 0.35 -1.94 16 2 C 0.25 3.32 3.26 -69.08 -0.22 3.09 16 3 H 0.10 1.14 6.65 -51.93 -0.35 0.80 16 4 N -1.12 -17.83 5.52 -5.87 -0.03 -17.87 16 5 S 2.78 51.70 6.12 -107.50 -0.66 51.04 16 6 O -0.97 -21.74 16.70 -57.18 -0.95 -22.69 16 7 O -1.00 -18.78 16.08 -57.18 -0.92 -19.70 16 8 N -0.99 -18.60 2.79 -115.85 -0.32 -18.93 16 9 C 0.09 1.42 9.66 59.84 0.58 2.00 16 10 C 0.27 6.13 2.62 -69.08 -0.18 5.95 16 11 H 0.06 1.56 6.91 -51.93 -0.36 1.20 16 12 C -0.15 -3.30 8.95 37.16 0.33 -2.96 16 13 C -0.52 -12.51 8.37 -34.44 -0.29 -12.80 16 14 H 0.07 1.48 5.90 -52.49 -0.31 1.17 16 15 C 0.07 1.64 5.30 -17.82 -0.09 1.55 16 16 N -0.89 -23.65 11.32 55.43 0.63 -23.02 16 17 Si 0.89 19.76 29.54 -169.99 -5.02 14.74 16 18 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 21 C 0.19 2.65 6.88 -154.12 -1.06 1.59 16 22 N -0.26 -4.25 11.95 32.97 0.39 -3.86 16 23 N -0.28 -4.40 12.22 29.65 0.36 -4.04 16 24 C 0.34 4.15 9.22 -88.76 -0.82 3.33 16 25 O -0.44 -3.73 13.62 -18.29 -0.25 -3.98 16 26 N -0.48 -5.28 3.20 -122.49 -0.39 -5.67 16 27 C 0.07 0.43 10.86 59.85 0.65 1.08 16 28 H 0.10 1.45 3.78 -51.93 -0.20 1.26 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.42 6.80 8.63 -34.47 -0.30 6.50 16 32 H 0.04 0.60 6.22 -51.93 -0.32 0.28 16 33 H 0.08 1.23 6.43 -51.93 -0.33 0.90 16 34 H 0.06 0.84 7.02 -51.93 -0.36 0.48 16 35 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.03 0.70 6.66 -51.93 -0.35 0.35 16 37 H 0.09 2.34 6.07 -51.93 -0.32 2.02 16 38 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 39 H 0.40 1.18 9.06 45.56 0.41 1.59 16 40 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.10 0.45 7.51 -51.93 -0.39 0.06 16 LS Contribution 354.86 15.07 5.35 5.35 Total: -1.00 -34.35 354.86 -6.99 -41.34 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -4.42 Total: 6.41 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: -0.75 Total: 0.88 kcal Atomic # 7 Polarization: -74.02 SS G_CDS: 0.64 Total: -73.38 kcal Atomic # 8 Polarization: -44.25 SS G_CDS: -2.12 Total: -46.37 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Atomic # 16 Polarization: 51.70 SS G_CDS: -0.66 Total: 51.04 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.35 -6.99 -41.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363999363.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.256 kcal (2) G-P(sol) polarization free energy of solvation -34.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds