Wall clock time and date at job start Tue Mar 31 2020 18:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46930 * 2 1 4 4 N 1.46506 * 109.47035 * 119.99770 * 2 1 3 5 5 S 1.65593 * 120.00141 * 265.00061 * 4 2 1 6 6 O 1.42095 * 106.40378 * 178.54407 * 5 4 2 7 7 O 1.42101 * 106.40474 * 311.46163 * 5 4 2 8 8 N 1.65606 * 107.21831 * 65.00076 * 5 4 2 9 9 C 1.46496 * 119.99908 * 270.00110 * 8 5 4 10 10 C 1.46500 * 119.99560 * 90.00156 * 8 5 4 11 11 H 1.08992 * 109.47233 * 359.97438 * 10 8 5 12 12 C 1.53005 * 109.47155 * 120.00380 * 10 8 5 13 13 C 1.50700 * 109.46716 * 240.00078 * 10 8 5 14 14 H 1.08002 * 120.00064 * 359.97438 * 13 10 8 15 15 C 1.37883 * 119.99797 * 180.02562 * 13 10 8 16 16 N 1.31509 * 119.99866 * 359.97438 * 15 13 10 17 17 Si 1.86801 * 119.99808 * 179.97438 * 15 13 10 18 18 H 1.48499 * 109.47063 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47035 * 119.99519 * 17 15 13 20 20 H 1.48496 * 109.47011 * 239.99544 * 17 15 13 21 21 C 1.50703 * 109.47292 * 240.00025 * 2 1 3 22 22 N 1.30324 * 126.35631 * 285.02029 * 21 2 1 23 23 N 1.28539 * 109.99404 * 179.97438 * 22 21 2 24 24 C 1.31034 * 109.85662 * 0.02562 * 23 22 21 25 25 O 1.35532 * 126.44924 * 180.02562 * 24 23 22 26 26 N 1.36315 * 107.10425 * 359.73310 * 24 23 22 27 27 C 1.46504 * 127.12266 * 180.28662 * 26 24 23 28 28 H 1.09004 * 109.47059 * 299.99602 * 1 2 3 29 29 H 1.08992 * 109.47060 * 60.00086 * 1 2 3 30 30 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 31 31 H 0.97003 * 119.99441 * 85.00818 * 4 2 1 32 32 H 1.08997 * 109.47390 * 90.00238 * 9 8 5 33 33 H 1.09007 * 109.46752 * 210.00252 * 9 8 5 34 34 H 1.09002 * 109.47073 * 329.99658 * 9 8 5 35 35 H 1.09002 * 109.46886 * 299.99371 * 12 10 8 36 36 H 1.08998 * 109.47023 * 59.99086 * 12 10 8 37 37 H 1.08997 * 109.46870 * 179.97438 * 12 10 8 38 38 H 0.97006 * 119.99249 * 180.02562 * 16 15 13 39 39 H 0.96711 * 113.99961 * 89.96904 * 25 24 23 40 40 H 1.08999 * 109.46400 * 270.15256 * 27 26 24 41 41 H 1.08998 * 109.46901 * 30.14788 * 27 26 24 42 42 H 1.08995 * 109.47715 * 150.15057 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 16 2.4122 0.1772 2.5505 6 8 2.8124 -0.7697 3.5315 7 8 3.2436 1.2443 2.1156 8 7 1.0167 0.8704 3.1115 9 6 0.6184 2.1993 2.6409 10 6 0.1807 0.1546 4.0784 11 1 0.6344 -0.8096 4.3074 12 6 0.0627 0.9808 5.3608 13 6 -1.1908 -0.0625 3.4928 14 1 -1.4171 0.2971 2.4999 15 6 -2.1570 -0.7194 4.2250 16 7 -1.8815 -1.1568 5.4343 17 14 -3.8572 -0.9879 3.4994 18 1 -3.9108 -0.4046 2.1348 19 1 -4.1403 -2.4440 3.4272 20 1 -4.8722 -0.3283 4.3594 21 6 2.0324 -0.7104 -1.2305 22 7 2.0335 -1.9978 -1.4329 23 7 2.5326 -2.2607 -2.5879 24 6 2.8790 -1.1478 -3.1868 25 8 3.4374 -1.0353 -4.4166 26 7 2.5659 -0.1241 -2.3429 27 6 2.7631 1.3082 -2.5790 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 2.1111 -1.6562 1.1949 32 1 -0.0046 2.0984 1.7523 33 1 0.0555 2.7082 3.4235 34 1 1.5080 2.7801 2.3970 35 1 1.0547 1.1379 5.7844 36 1 -0.3912 1.9449 5.1314 37 1 -0.5597 0.4484 6.0800 38 1 -2.5612 -1.6193 5.9492 39 1 2.7947 -0.9466 -5.1338 40 1 3.7493 1.6031 -2.2203 41 1 2.6884 1.5141 -3.6468 42 1 1.9986 1.8731 -2.0458 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363999363.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:21 Heat of formation + Delta-G solvation = -52.448360 kcal Electronic energy + Delta-G solvation = -28431.028688 eV Core-core repulsion = 24381.515709 eV Total energy + Delta-G solvation = -4049.512979 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.130 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.19654 -38.83496 -38.40283 -37.96631 -37.34413 -36.93089 -35.91634 -34.43556 -31.53979 -30.86872 -29.94019 -28.54165 -27.23484 -26.89563 -25.13719 -23.42873 -22.55560 -21.92313 -20.42403 -19.88046 -18.94321 -18.55329 -18.26738 -18.06336 -17.37605 -17.10499 -16.88361 -16.14815 -15.83107 -15.43112 -15.17421 -14.91287 -14.70412 -14.52540 -14.19073 -13.78042 -13.63079 -13.53499 -13.47584 -13.32886 -13.22113 -13.15437 -12.92208 -12.85441 -12.73698 -12.66056 -12.56512 -12.31990 -12.16010 -12.05378 -11.75751 -11.33802 -11.25638 -11.04362 -10.75548 -10.42990 -10.23911 -9.60241 -8.01415 -6.14408 -0.37361 0.47472 1.01155 1.48883 1.52908 1.55734 1.60980 1.99732 2.51382 2.59112 2.67959 3.07681 3.28874 3.42588 3.55452 3.76195 4.00120 4.14326 4.21493 4.32794 4.43766 4.62075 4.65739 4.75889 4.82654 4.85048 4.94155 5.01579 5.05855 5.13010 5.22754 5.27047 5.46212 5.52134 5.68906 5.78279 5.91568 5.99376 6.18553 6.37271 6.41655 6.96299 7.50289 7.55234 9.03534 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014487 B = 0.004296 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.276318 B = 6515.825257 C = 7513.568871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.247 3.753 3 H 0.128 0.872 4 N -1.115 6.115 5 S 2.800 3.200 6 O -1.016 7.016 7 O -1.000 7.000 8 N -0.990 5.990 9 C 0.083 3.917 10 C 0.274 3.726 11 H 0.021 0.979 12 C -0.141 4.141 13 C -0.517 4.517 14 H 0.083 0.917 15 C 0.014 3.986 16 N -0.921 5.921 17 Si 0.952 3.048 18 H -0.256 1.256 19 H -0.295 1.295 20 H -0.287 1.287 21 C 0.187 3.813 22 N -0.300 5.300 23 N -0.329 5.329 24 C 0.357 3.643 25 O -0.432 6.432 26 N -0.473 5.473 27 C 0.054 3.946 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.057 0.943 31 H 0.422 0.578 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.017 0.983 36 H 0.050 0.950 37 H 0.067 0.933 38 H 0.260 0.740 39 H 0.430 0.570 40 H 0.091 0.909 41 H 0.123 0.877 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.670 10.462 -18.928 22.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.137 3.863 3 H 0.145 0.855 4 N -0.875 5.875 5 S 2.809 3.191 6 O -1.001 7.001 7 O -0.983 6.983 8 N -0.832 5.832 9 C -0.062 4.062 10 C 0.169 3.831 11 H 0.039 0.961 12 C -0.200 4.200 13 C -0.557 4.557 14 H 0.101 0.899 15 C -0.185 4.185 16 N -0.561 5.561 17 Si 0.779 3.221 18 H -0.179 1.179 19 H -0.221 1.221 20 H -0.213 1.213 21 C -0.083 4.083 22 N -0.142 5.142 23 N -0.180 5.180 24 C 0.051 3.949 25 O -0.235 6.235 26 N -0.176 5.176 27 C -0.086 4.086 28 H 0.107 0.893 29 H 0.112 0.888 30 H 0.076 0.924 31 H 0.256 0.744 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.036 0.964 36 H 0.069 0.931 37 H 0.086 0.914 38 H 0.069 0.931 39 H 0.292 0.708 40 H 0.110 0.890 41 H 0.141 0.859 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 5.865 9.227 -18.085 21.133 hybrid contribution -1.296 0.140 -0.588 1.430 sum 4.569 9.366 -18.673 21.385 Atomic orbital electron populations 1.22487 0.91479 1.04178 1.04822 1.19113 0.95459 0.94673 0.77104 0.85490 1.55966 1.83545 1.20714 1.27281 1.01138 0.73383 0.72361 0.72237 1.93557 1.82534 1.64331 1.59632 1.93511 1.65844 1.56070 1.82859 1.57506 1.42290 1.27392 1.56040 1.21681 1.01371 0.82165 1.00988 1.18398 0.89532 0.89811 0.85333 0.96094 1.21959 0.98426 0.99976 0.99662 1.21749 0.95866 1.35909 1.02145 0.89938 1.25650 1.02034 0.95631 0.95152 1.70035 1.35068 1.39466 1.11542 0.85601 0.80319 0.77068 0.79146 1.17937 1.22135 1.21338 1.24760 1.00786 0.90993 0.91790 1.74099 1.17799 1.12556 1.09745 1.74514 1.17386 1.22608 1.03485 1.22035 0.99601 0.83860 0.89401 1.84908 1.34455 1.93691 1.10454 1.46808 1.45685 1.10780 1.14332 1.22669 1.05626 0.73598 1.06754 0.89303 0.88840 0.92385 0.74352 0.91156 0.90506 0.90022 0.96373 0.93130 0.91439 0.93116 0.70803 0.89012 0.85851 0.86417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.04 9.50 71.98 0.68 -3.35 16 2 C 0.25 6.04 3.26 44.25 0.14 6.18 16 3 H 0.13 2.41 6.65 -2.38 -0.02 2.39 16 4 N -1.12 -34.96 5.52 -172.50 -0.95 -35.92 16 5 S 2.80 102.43 6.12 -56.49 -0.35 102.08 16 6 O -1.02 -46.60 16.70 -128.00 -2.14 -48.74 16 7 O -1.00 -35.58 16.08 -128.00 -2.06 -37.64 16 8 N -0.99 -36.17 2.79 -520.45 -1.45 -37.63 16 9 C 0.08 2.30 9.66 127.77 1.23 3.54 16 10 C 0.27 12.60 2.62 44.25 0.12 12.71 16 11 H 0.02 1.14 6.91 -2.39 -0.02 1.13 16 12 C -0.14 -6.38 8.95 71.98 0.64 -5.74 16 13 C -0.52 -24.36 8.37 25.60 0.21 -24.15 16 14 H 0.08 3.54 5.90 -2.91 -0.02 3.52 16 15 C 0.01 0.73 5.30 84.66 0.45 1.18 16 16 N -0.92 -50.36 11.32 21.45 0.24 -50.12 16 17 Si 0.95 40.24 29.54 68.60 2.03 42.27 16 18 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 19 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 20 H -0.29 -12.14 7.11 99.48 0.71 -11.43 16 21 C 0.19 4.81 6.88 137.68 0.95 5.76 16 22 N -0.30 -9.68 11.95 -49.60 -0.59 -10.27 16 23 N -0.33 -10.15 12.22 -173.67 -2.12 -12.28 16 24 C 0.36 7.95 9.22 179.70 1.66 9.61 16 25 O -0.43 -6.15 13.62 -88.36 -1.20 -7.35 16 26 N -0.47 -9.04 3.20 -652.24 -2.09 -11.12 16 27 C 0.05 0.44 10.86 127.77 1.39 1.83 16 28 H 0.09 2.32 3.78 -2.39 -0.01 2.31 16 29 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 31 H 0.42 13.82 8.63 -96.74 -0.84 12.99 16 32 H 0.07 1.60 6.22 -2.39 -0.01 1.59 16 33 H 0.08 2.19 6.43 -2.38 -0.02 2.17 16 34 H 0.08 1.95 7.02 -2.39 -0.02 1.93 16 35 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.05 2.06 6.66 -2.39 -0.02 2.05 16 37 H 0.07 3.44 6.07 -2.39 -0.01 3.43 16 38 H 0.26 13.69 8.31 -92.70 -0.77 12.92 16 39 H 0.43 1.01 9.06 -74.05 -0.67 0.34 16 40 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.12 0.25 8.14 -2.39 -0.02 0.23 16 42 H 0.12 0.51 7.51 -2.39 -0.02 0.50 16 Total: -1.00 -76.28 354.86 -3.61 -79.89 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: -0.41 Total: 19.25 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: 7.48 Total: 7.58 kcal Atomic # 7 Polarization: -150.37 SS G_CDS: -6.97 Total: -157.34 kcal Atomic # 8 Polarization: -88.33 SS G_CDS: -5.40 Total: -93.73 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 2.03 Total: 42.27 kcal Atomic # 16 Polarization: 102.43 SS G_CDS: -0.35 Total: 102.08 kcal Total: -76.28 -3.61 -79.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363999363.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.441 kcal (2) G-P(sol) polarization free energy of solvation -76.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds