Wall clock time and date at job start Tue Mar 31 2020 18:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.46497 * 120.00073 * 60.00310 * 12 2 1 14 14 S 1.65606 * 120.00188 * 240.00233 * 12 2 1 15 15 O 1.42096 * 106.40395 * 203.54186 * 14 12 2 16 16 O 1.42108 * 106.39975 * 336.45918 * 14 12 2 17 17 N 1.65593 * 107.21842 * 89.99816 * 14 12 2 18 18 C 1.46500 * 119.99925 * 65.00539 * 17 14 12 19 19 H 1.09003 * 109.47054 * 334.99876 * 18 17 14 20 20 C 1.52994 * 109.47635 * 94.99831 * 18 17 14 21 21 C 1.50706 * 109.47204 * 214.99734 * 18 17 14 22 22 N 1.30323 * 126.35789 * 314.68989 * 21 18 17 23 23 N 1.28539 * 109.99298 * 179.85712 * 22 21 18 24 24 C 1.31039 * 109.85812 * 0.40999 * 23 22 21 25 25 O 1.35528 * 126.44579 * 179.72941 * 24 23 22 26 26 N 1.36309 * 107.10377 * 359.75653 * 24 23 22 27 27 C 1.46501 * 127.12029 * 180.02562 * 26 24 23 28 28 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 29 29 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.46905 * 89.99959 * 13 12 2 33 33 H 1.09005 * 109.47144 * 209.99900 * 13 12 2 34 34 H 1.08993 * 109.47302 * 330.00087 * 13 12 2 35 35 H 0.97005 * 120.00537 * 244.99777 * 17 14 12 36 36 H 1.08997 * 109.47853 * 180.02562 * 20 18 17 37 37 H 1.09003 * 109.47062 * 300.00474 * 20 18 17 38 38 H 1.09004 * 109.47370 * 60.00057 * 20 18 17 39 39 H 0.96700 * 114.00582 * 270.02718 * 25 24 23 40 40 H 1.08999 * 109.47076 * 269.99356 * 27 26 24 41 41 H 1.08998 * 109.46736 * 29.99723 * 27 26 24 42 42 H 1.08996 * 109.46926 * 149.99555 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 16 2.9703 0.1143 2.2863 15 8 3.7118 -0.8787 2.9816 16 8 3.5794 1.1831 1.5748 17 7 1.9606 0.8092 3.3997 18 6 1.1509 -0.0350 4.2817 19 1 0.9876 -1.0033 3.8085 20 6 1.8826 -0.2338 5.6105 21 6 -0.1772 0.6310 4.5344 22 7 -0.3683 1.8854 4.8316 23 7 -1.6244 2.1160 4.9776 24 6 -2.3046 1.0121 4.7886 25 8 -3.6504 0.8724 4.8660 26 7 -1.4037 0.0306 4.5002 27 6 -1.6915 -1.3768 4.2124 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 0.7088 1.1611 -3.4845 32 1 2.4158 -2.7376 0.9718 33 1 1.6238 -2.2851 2.5003 34 1 0.6905 -2.3002 0.9847 35 1 1.9053 1.7753 3.4681 36 1 1.2804 -0.8623 6.2666 37 1 2.8432 -0.7155 5.4278 38 1 2.0459 0.7344 6.0839 39 1 -3.9720 0.6425 5.7485 40 1 -1.6831 -1.9467 5.1415 41 1 -2.6726 -1.4587 3.7447 42 1 -0.9328 -1.7719 3.5369 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363999426.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:26 Heat of formation + Delta-G solvation = -21.894201 kcal Electronic energy + Delta-G solvation = -28616.757200 eV Core-core repulsion = 24568.569148 eV Total energy + Delta-G solvation = -4048.188051 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.130 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.25059 -38.04459 -36.95342 -36.44148 -36.14167 -35.30617 -35.08810 -32.64251 -30.50208 -29.20350 -29.01857 -27.90881 -25.72942 -25.18319 -24.25649 -22.56167 -21.01333 -20.85506 -19.18753 -18.92588 -17.68435 -17.25099 -16.92264 -16.59809 -16.38652 -15.97471 -15.20051 -15.08304 -14.62142 -14.38542 -13.89219 -13.60135 -13.41800 -13.38900 -13.19156 -12.91149 -12.81394 -12.48474 -12.08390 -11.93526 -11.85813 -11.71866 -11.54739 -11.41942 -11.38871 -11.24594 -11.01786 -10.85234 -10.57998 -10.46718 -10.41487 -10.34420 -10.09339 -9.65461 -9.32130 -9.24149 -8.48734 -8.07990 -6.09836 -4.17331 1.03274 1.36409 1.84176 2.54784 3.27922 3.33232 3.34240 3.38376 3.47448 3.82973 4.09957 4.29322 4.37384 4.39120 4.69137 4.78893 4.93655 5.04686 5.08541 5.21211 5.27250 5.38166 5.48245 5.61944 5.65079 5.90127 5.95191 6.06145 6.22037 6.23876 6.49451 6.68421 6.69401 6.95136 7.04128 7.05887 7.39199 7.57115 7.73472 7.99313 8.22598 8.47248 8.84569 9.48741 10.95805 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013875 B = 0.004467 C = 0.003826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.576473 B = 6266.399131 C = 7316.784149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.269 3.731 3 H 0.060 0.940 4 C -0.522 4.522 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.899 3.101 9 H -0.287 1.287 10 H -0.276 1.276 11 H -0.277 1.277 12 N -0.991 5.991 13 C 0.106 3.894 14 S 2.777 3.223 15 O -0.990 6.990 16 O -0.965 6.965 17 N -1.121 6.121 18 C 0.251 3.749 19 H 0.097 0.903 20 C -0.165 4.165 21 C 0.188 3.812 22 N -0.263 5.263 23 N -0.280 5.280 24 C 0.346 3.654 25 O -0.434 6.434 26 N -0.479 5.479 27 C 0.066 3.934 28 H 0.094 0.906 29 H 0.032 0.968 30 H 0.006 0.994 31 H 0.264 0.736 32 H 0.054 0.946 33 H 0.044 0.956 34 H 0.072 0.928 35 H 0.423 0.577 36 H 0.065 0.935 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.404 0.596 40 H 0.085 0.915 41 H 0.097 0.903 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.185 -7.030 17.335 20.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.166 3.834 3 H 0.078 0.922 4 C -0.562 4.562 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.727 3.273 9 H -0.212 1.212 10 H -0.201 1.201 11 H -0.203 1.203 12 N -0.834 5.834 13 C -0.040 4.040 14 S 2.786 3.214 15 O -0.974 6.974 16 O -0.949 6.949 17 N -0.879 5.879 18 C 0.140 3.860 19 H 0.114 0.886 20 C -0.225 4.225 21 C -0.081 4.081 22 N -0.106 5.106 23 N -0.131 5.131 24 C 0.042 3.958 25 O -0.233 6.233 26 N -0.182 5.182 27 C -0.077 4.077 28 H 0.112 0.888 29 H 0.051 0.949 30 H 0.025 0.975 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.091 0.909 35 H 0.258 0.742 36 H 0.084 0.916 37 H 0.106 0.894 38 H 0.093 0.907 39 H 0.261 0.739 40 H 0.104 0.896 41 H 0.116 0.884 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.182 -5.507 16.878 18.799 hybrid contribution -0.927 -1.621 -0.764 2.017 sum -7.110 -7.127 16.115 19.001 Atomic orbital electron populations 1.22099 0.98382 0.99364 1.00613 1.18741 0.91134 0.93110 0.80386 0.92212 1.21262 1.31837 1.13101 0.89953 0.91938 1.24920 0.94921 0.94983 0.99042 1.69852 1.36308 1.22602 1.23985 0.86544 0.79399 0.79481 0.81890 1.21211 1.20096 1.20278 1.57765 1.70069 1.19611 1.35964 1.21220 1.02086 0.82535 0.98193 1.02129 0.73647 0.73324 0.72349 1.93548 1.68784 1.60576 1.74455 1.93640 1.73959 1.55862 1.71422 1.56424 1.60960 1.18274 1.52279 1.18820 0.82262 0.91871 0.93076 0.88558 1.22329 1.01638 1.03644 0.94878 1.24761 0.87474 0.91740 1.04080 1.74149 1.08003 1.11531 1.16879 1.74621 0.98449 1.19923 1.20120 1.22005 0.84133 0.85142 1.04531 1.84942 1.11019 1.90771 1.36537 1.46607 1.07102 1.11225 1.53287 1.22224 1.05049 0.77102 1.03287 0.88793 0.94941 0.97464 0.92565 0.92759 0.93732 0.90943 0.74213 0.91647 0.89390 0.90691 0.73939 0.89608 0.88401 0.88429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 8.95 37.16 0.33 -2.90 16 2 C 0.27 6.43 2.62 -69.09 -0.18 6.25 16 3 H 0.06 1.62 6.91 -51.92 -0.36 1.26 16 4 C -0.52 -13.74 8.37 -34.44 -0.29 -14.03 16 5 H 0.06 1.62 7.65 -52.49 -0.40 1.22 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -24.71 11.32 55.43 0.63 -24.09 16 8 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 9 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 12 N -0.99 -19.32 3.12 -115.86 -0.36 -19.68 16 13 C 0.11 1.66 9.32 59.85 0.56 2.22 16 14 S 2.78 51.94 6.00 -107.50 -0.65 51.29 16 15 O -0.99 -18.64 16.47 -57.17 -0.94 -19.58 16 16 O -0.96 -22.22 16.70 -57.17 -0.95 -23.18 16 17 N -1.12 -16.76 5.52 -5.88 -0.03 -16.80 16 18 C 0.25 3.04 3.20 -69.08 -0.22 2.82 16 19 H 0.10 1.01 4.92 -51.93 -0.26 0.75 16 20 C -0.17 -1.67 9.50 37.15 0.35 -1.31 16 21 C 0.19 2.45 6.88 -154.11 -1.06 1.39 16 22 N -0.26 -4.10 11.96 32.97 0.39 -3.70 16 23 N -0.28 -4.36 12.22 29.65 0.36 -3.99 16 24 C 0.35 4.26 9.22 -88.76 -0.82 3.45 16 25 O -0.43 -3.92 13.62 -18.28 -0.25 -4.17 16 26 N -0.48 -5.20 3.20 -122.49 -0.39 -5.59 16 27 C 0.07 0.42 11.03 59.85 0.66 1.08 16 28 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 29 H 0.03 0.66 6.66 -51.93 -0.35 0.31 16 30 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 16 31 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.04 0.53 6.17 -51.93 -0.32 0.21 16 34 H 0.07 1.08 6.43 -51.93 -0.33 0.75 16 35 H 0.42 6.27 8.64 -34.47 -0.30 5.97 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.09 0.94 7.64 -51.93 -0.40 0.55 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.40 1.25 9.06 45.56 0.41 1.66 16 40 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.10 0.60 7.10 -51.93 -0.37 0.23 16 LS Contribution 359.78 15.07 5.42 5.42 Total: -1.00 -36.27 359.78 -7.21 -43.48 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -4.65 Total: 4.13 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: -0.76 Total: 0.58 kcal Atomic # 7 Polarization: -74.45 SS G_CDS: 0.60 Total: -73.85 kcal Atomic # 8 Polarization: -44.78 SS G_CDS: -2.15 Total: -46.92 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: 51.94 SS G_CDS: -0.65 Total: 51.29 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -36.27 -7.21 -43.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363999426.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.585 kcal (2) G-P(sol) polarization free energy of solvation -36.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds