Wall clock time and date at job start Tue Mar 31 2020 18:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.46497 * 120.00073 * 60.00310 * 12 2 1 14 14 S 1.65606 * 120.00188 * 240.00233 * 12 2 1 15 15 O 1.42096 * 106.40395 * 203.54186 * 14 12 2 16 16 O 1.42108 * 106.39975 * 336.45918 * 14 12 2 17 17 N 1.65593 * 107.21842 * 89.99816 * 14 12 2 18 18 C 1.46500 * 119.99925 * 65.00539 * 17 14 12 19 19 H 1.09003 * 109.47054 * 334.99876 * 18 17 14 20 20 C 1.52994 * 109.47635 * 94.99831 * 18 17 14 21 21 C 1.50706 * 109.47204 * 214.99734 * 18 17 14 22 22 N 1.30323 * 126.35789 * 314.68989 * 21 18 17 23 23 N 1.28539 * 109.99298 * 179.85712 * 22 21 18 24 24 C 1.31039 * 109.85812 * 0.40999 * 23 22 21 25 25 O 1.35528 * 126.44579 * 179.72941 * 24 23 22 26 26 N 1.36309 * 107.10377 * 359.75653 * 24 23 22 27 27 C 1.46501 * 127.12029 * 180.02562 * 26 24 23 28 28 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 29 29 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.46905 * 89.99959 * 13 12 2 33 33 H 1.09005 * 109.47144 * 209.99900 * 13 12 2 34 34 H 1.08993 * 109.47302 * 330.00087 * 13 12 2 35 35 H 0.97005 * 120.00537 * 244.99777 * 17 14 12 36 36 H 1.08997 * 109.47853 * 180.02562 * 20 18 17 37 37 H 1.09003 * 109.47062 * 300.00474 * 20 18 17 38 38 H 1.09004 * 109.47370 * 60.00057 * 20 18 17 39 39 H 0.96700 * 114.00582 * 270.02718 * 25 24 23 40 40 H 1.08999 * 109.47076 * 269.99356 * 27 26 24 41 41 H 1.08998 * 109.46736 * 29.99723 * 27 26 24 42 42 H 1.08996 * 109.46926 * 149.99555 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 16 2.9703 0.1143 2.2863 15 8 3.7118 -0.8787 2.9816 16 8 3.5794 1.1831 1.5748 17 7 1.9606 0.8092 3.3997 18 6 1.1509 -0.0350 4.2817 19 1 0.9876 -1.0033 3.8085 20 6 1.8826 -0.2338 5.6105 21 6 -0.1772 0.6310 4.5344 22 7 -0.3683 1.8854 4.8316 23 7 -1.6244 2.1160 4.9776 24 6 -2.3046 1.0121 4.7886 25 8 -3.6504 0.8724 4.8660 26 7 -1.4037 0.0306 4.5002 27 6 -1.6915 -1.3768 4.2124 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 0.7088 1.1611 -3.4845 32 1 2.4158 -2.7376 0.9718 33 1 1.6238 -2.2851 2.5003 34 1 0.6905 -2.3002 0.9847 35 1 1.9053 1.7753 3.4681 36 1 1.2804 -0.8623 6.2666 37 1 2.8432 -0.7155 5.4278 38 1 2.0459 0.7344 6.0839 39 1 -3.9720 0.6425 5.7485 40 1 -1.6831 -1.9467 5.1415 41 1 -2.6726 -1.4587 3.7447 42 1 -0.9328 -1.7719 3.5369 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363999426.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:25 Heat of formation + Delta-G solvation = -54.285569 kcal Electronic energy + Delta-G solvation = -28618.161795 eV Core-core repulsion = 24568.569148 eV Total energy + Delta-G solvation = -4049.592647 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.130 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.16881 -38.82692 -38.40620 -37.98753 -37.40675 -36.90090 -35.90104 -34.54278 -31.56749 -30.96181 -29.95438 -28.52728 -27.32057 -26.99804 -25.17737 -23.42812 -22.64442 -21.92150 -20.42187 -19.86220 -19.01062 -18.59431 -18.39288 -17.97587 -17.49453 -17.15462 -16.85442 -16.12763 -15.84574 -15.52987 -15.18761 -14.86209 -14.74022 -14.50387 -14.22324 -13.81406 -13.74470 -13.57764 -13.48381 -13.38639 -13.20427 -13.16831 -13.00255 -12.88521 -12.81039 -12.70731 -12.61074 -12.39366 -12.21598 -12.17742 -11.90905 -11.33824 -11.21868 -11.18880 -10.83431 -10.50848 -10.22641 -9.69878 -8.11847 -6.26176 -0.42165 0.50385 1.02376 1.43439 1.46195 1.52774 1.57665 2.01194 2.42802 2.53721 2.73103 3.10049 3.16950 3.38963 3.48192 3.68785 3.98126 4.02714 4.19986 4.36236 4.39808 4.62522 4.64693 4.66770 4.82530 4.83792 4.87739 4.89325 4.96437 5.04426 5.12677 5.21063 5.29925 5.52613 5.59726 5.64531 5.83360 5.91708 6.12335 6.27838 6.44459 6.82206 7.43454 7.51961 8.92219 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013875 B = 0.004467 C = 0.003826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.576473 B = 6266.399131 C = 7316.784149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.275 3.725 3 H 0.018 0.982 4 C -0.535 4.535 5 H 0.062 0.938 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.957 3.043 9 H -0.286 1.286 10 H -0.279 1.279 11 H -0.263 1.263 12 N -0.996 5.996 13 C 0.094 3.906 14 S 2.796 3.204 15 O -0.990 6.990 16 O -1.015 7.015 17 N -1.114 6.114 18 C 0.244 3.756 19 H 0.119 0.881 20 C -0.161 4.161 21 C 0.185 3.815 22 N -0.298 5.298 23 N -0.329 5.329 24 C 0.357 3.643 25 O -0.434 6.434 26 N -0.472 5.472 27 C 0.053 3.947 28 H 0.062 0.938 29 H 0.051 0.949 30 H 0.019 0.981 31 H 0.263 0.737 32 H 0.047 0.953 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.423 0.577 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.430 0.570 40 H 0.121 0.879 41 H 0.107 0.893 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.226 -9.772 18.525 22.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.171 3.829 3 H 0.036 0.964 4 C -0.575 4.575 5 H 0.080 0.920 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.782 3.218 9 H -0.211 1.211 10 H -0.204 1.204 11 H -0.187 1.187 12 N -0.839 5.839 13 C -0.051 4.051 14 S 2.804 3.196 15 O -0.973 6.973 16 O -1.000 7.000 17 N -0.875 5.875 18 C 0.135 3.865 19 H 0.136 0.864 20 C -0.221 4.221 21 C -0.085 4.085 22 N -0.141 5.141 23 N -0.180 5.180 24 C 0.051 3.949 25 O -0.237 6.237 26 N -0.174 5.174 27 C -0.088 4.088 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.038 0.962 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.258 0.742 36 H 0.115 0.885 37 H 0.102 0.898 38 H 0.087 0.913 39 H 0.292 0.708 40 H 0.139 0.861 41 H 0.125 0.875 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -7.245 -8.306 18.105 21.196 hybrid contribution -0.683 -0.812 -1.025 1.476 sum -7.928 -9.119 17.080 20.922 Atomic orbital electron populations 1.21845 0.97047 1.00233 0.99642 1.18342 0.91956 0.91217 0.81433 0.96402 1.21609 1.31622 1.13102 0.91147 0.91973 1.25681 0.95197 0.95664 1.01856 1.69994 1.37390 1.23847 1.24387 0.85635 0.78467 0.79103 0.78577 1.21117 1.20432 1.18718 1.57607 1.70021 1.21240 1.35014 1.21538 1.02308 0.80049 1.01163 1.01374 0.73564 0.72465 0.72158 1.93540 1.69053 1.60489 1.74226 1.93570 1.75657 1.57712 1.73027 1.56095 1.61124 1.18521 1.51784 1.19202 0.81775 0.91881 0.93685 0.86394 1.22319 1.01687 1.03950 0.94148 1.24782 0.88380 0.91392 1.03942 1.74039 1.08491 1.13234 1.18305 1.74498 0.98881 1.22039 1.22543 1.22023 0.85091 0.84894 1.02894 1.84906 1.09152 1.90782 1.38894 1.46773 1.05874 1.12519 1.52257 1.22675 1.05750 0.74841 1.05507 0.91915 0.92997 0.96184 0.92735 0.93403 0.89452 0.89961 0.74160 0.88529 0.89805 0.91348 0.70820 0.86097 0.87489 0.87767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.65 8.95 71.98 0.64 -5.00 16 2 C 0.27 13.24 2.62 44.24 0.12 13.35 16 3 H 0.02 1.02 6.91 -2.38 -0.02 1.00 16 4 C -0.54 -28.23 8.37 25.60 0.21 -28.02 16 5 H 0.06 3.20 7.65 -2.91 -0.02 3.18 16 6 C 0.02 0.85 5.30 84.66 0.45 1.30 16 7 N -0.92 -51.88 11.32 21.45 0.24 -51.64 16 8 Si 0.96 42.70 29.54 68.60 2.03 44.72 16 9 H -0.29 -12.60 7.11 99.48 0.71 -11.90 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 12 N -1.00 -37.88 3.12 -520.46 -1.62 -39.50 16 13 C 0.09 2.70 9.32 127.77 1.19 3.89 16 14 S 2.80 103.44 6.00 -56.49 -0.34 103.10 16 15 O -0.99 -35.67 16.47 -128.00 -2.11 -37.78 16 16 O -1.02 -48.24 16.70 -128.00 -2.14 -50.38 16 17 N -1.11 -32.56 5.52 -172.52 -0.95 -33.51 16 18 C 0.24 5.36 3.20 44.24 0.14 5.50 16 19 H 0.12 2.01 4.92 -2.39 -0.01 2.00 16 20 C -0.16 -2.84 9.50 71.98 0.68 -2.16 16 21 C 0.18 4.50 6.88 137.68 0.95 5.45 16 22 N -0.30 -9.20 11.96 -49.60 -0.59 -9.79 16 23 N -0.33 -10.10 12.22 -173.68 -2.12 -12.23 16 24 C 0.36 8.17 9.22 179.70 1.66 9.83 16 25 O -0.43 -6.81 13.62 -88.32 -1.20 -8.02 16 26 N -0.47 -8.97 3.20 -652.25 -2.09 -11.06 16 27 C 0.05 0.46 11.03 127.77 1.41 1.87 16 28 H 0.06 3.19 6.07 -2.39 -0.01 3.18 16 29 H 0.05 2.03 6.66 -2.39 -0.02 2.01 16 30 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 32 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.09 1.71 6.17 -2.38 -0.01 1.70 16 34 H 0.08 2.19 6.43 -2.39 -0.02 2.17 16 35 H 0.42 12.74 8.64 -96.74 -0.84 11.91 16 36 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.08 1.57 7.64 -2.39 -0.02 1.56 16 38 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 39 H 0.43 1.43 9.06 -74.06 -0.67 0.76 16 40 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 41 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.10 0.80 7.10 -2.39 -0.02 0.78 16 Total: -1.00 -80.93 359.78 -3.87 -84.79 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -0.42 Total: 15.28 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: 7.45 Total: 6.00 kcal Atomic # 7 Polarization: -150.59 SS G_CDS: -7.14 Total: -157.72 kcal Atomic # 8 Polarization: -90.72 SS G_CDS: -5.45 Total: -96.17 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.72 kcal Atomic # 16 Polarization: 103.44 SS G_CDS: -0.34 Total: 103.10 kcal Total: -80.93 -3.87 -84.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363999426.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.506 kcal (2) G-P(sol) polarization free energy of solvation -80.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds