Wall clock time and date at job start Tue Mar 31 2020 18:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46841 * 2 1 4 4 C 1.50699 * 109.47641 * 120.00234 * 2 1 3 5 5 H 1.07993 * 119.99806 * 119.99942 * 4 2 1 6 6 C 1.37876 * 119.99876 * 300.00112 * 4 2 1 7 7 N 1.31512 * 119.99862 * 179.97438 * 6 4 2 8 8 Si 1.86797 * 120.00166 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47812 * 89.99751 * 8 6 4 10 10 H 1.48499 * 109.47306 * 210.00077 * 8 6 4 11 11 H 1.48508 * 109.47242 * 329.99697 * 8 6 4 12 12 N 1.46500 * 109.47104 * 240.00536 * 2 1 3 13 13 C 1.46502 * 119.99635 * 299.99807 * 12 2 1 14 14 S 1.65601 * 120.00174 * 119.99385 * 12 2 1 15 15 O 1.42105 * 106.40099 * 336.46416 * 14 12 2 16 16 O 1.42097 * 106.40519 * 203.54352 * 14 12 2 17 17 N 1.65605 * 107.21662 * 90.00139 * 14 12 2 18 18 C 1.46499 * 119.99782 * 64.99951 * 17 14 12 19 19 H 1.09002 * 109.47391 * 334.99987 * 18 17 14 20 20 C 1.53000 * 109.46840 * 95.00317 * 18 17 14 21 21 C 1.50699 * 109.47060 * 215.00059 * 18 17 14 22 22 N 1.30331 * 126.36036 * 314.69022 * 21 18 17 23 23 N 1.28530 * 109.99698 * 179.85797 * 22 21 18 24 24 C 1.31032 * 109.85669 * 0.41800 * 23 22 21 25 25 O 1.35541 * 126.44662 * 179.73551 * 24 23 22 26 26 N 1.36305 * 107.10682 * 359.74648 * 24 23 22 27 27 C 1.46496 * 127.12319 * 180.02562 * 26 24 23 28 28 H 1.09006 * 109.46822 * 299.99321 * 1 2 3 29 29 H 1.08996 * 109.47523 * 59.99377 * 1 2 3 30 30 H 1.09003 * 109.46841 * 179.97438 * 1 2 3 31 31 H 0.97004 * 119.99698 * 179.97438 * 7 6 4 32 32 H 1.08994 * 109.46995 * 269.99373 * 13 12 2 33 33 H 1.08995 * 109.47515 * 29.99867 * 13 12 2 34 34 H 1.09003 * 109.46872 * 150.00168 * 13 12 2 35 35 H 0.96993 * 119.99820 * 245.00082 * 17 14 12 36 36 H 1.09004 * 109.46724 * 180.02562 * 20 18 17 37 37 H 1.09001 * 109.47194 * 299.99493 * 20 18 17 38 38 H 1.08992 * 109.47399 * 59.99666 * 20 18 17 39 39 H 0.96699 * 113.99380 * 270.02119 * 25 24 23 40 40 H 1.09007 * 109.47450 * 270.00169 * 27 26 24 41 41 H 1.09005 * 109.47215 * 30.00133 * 27 26 24 42 42 H 1.09004 * 109.47559 * 150.00090 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 1.2304 5 1 2.6534 -1.5884 1.1312 6 6 1.6994 -0.2394 2.4827 7 7 2.1375 -0.8597 3.5564 8 14 0.6248 1.2788 2.6542 9 1 -0.8027 0.8725 2.6999 10 1 0.9760 1.9949 3.9069 11 1 0.8470 2.1764 1.4921 12 7 2.0183 -0.6905 -1.1962 13 6 1.6644 -2.0931 -1.4281 14 16 2.9703 0.1144 -2.2863 15 8 2.6902 1.4975 -2.1192 16 8 2.8226 -0.5642 -3.5260 17 7 4.5437 -0.1040 -1.8182 18 6 5.1357 -1.4438 -1.8418 19 1 4.3473 -2.1911 -1.7513 20 6 5.8829 -1.6479 -3.1612 21 6 6.0987 -1.5878 -0.6916 22 7 6.9965 -0.7183 -0.3221 23 7 7.6432 -1.1604 0.6969 24 6 7.1953 -2.3464 1.0280 25 8 7.6413 -3.1197 2.0480 26 7 6.1968 -2.6564 0.1536 27 6 5.3943 -3.8818 0.1262 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.9035 -0.5281 4.4374 32 1 2.4158 -2.7376 -0.9719 33 1 0.6905 -2.3002 -0.9847 34 1 1.6238 -2.2850 -2.5003 35 1 5.0732 0.6552 -1.5284 36 1 6.3230 -2.6450 -3.1790 37 1 5.1864 -1.5438 -3.9932 38 1 6.6713 -0.9008 -3.2517 39 1 8.3607 -3.7175 1.8028 40 1 5.8814 -4.6210 -0.5099 41 1 5.3010 -4.2777 1.1375 42 1 4.4035 -3.6585 -0.2695 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363999432.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:30 Heat of formation + Delta-G solvation = -14.949849 kcal Electronic energy + Delta-G solvation = -28980.768949 eV Core-core repulsion = 24932.882027 eV Total energy + Delta-G solvation = -4047.886922 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.130 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.98784 -37.80369 -37.02361 -36.59071 -36.20227 -35.47333 -34.83789 -32.59970 -30.38210 -30.12083 -28.85562 -27.64524 -25.93126 -25.08186 -24.09117 -22.31699 -21.04101 -20.77344 -19.11018 -18.80344 -17.68435 -17.32310 -16.92637 -16.52149 -16.32939 -16.02194 -15.44085 -14.86077 -14.61956 -14.38483 -13.77662 -13.73784 -13.51585 -13.25222 -12.99071 -12.81497 -12.65023 -12.41104 -12.33946 -12.20179 -12.11145 -11.73775 -11.71245 -11.65659 -11.51953 -11.33989 -11.24993 -11.14513 -10.57400 -10.20694 -10.19999 -10.16927 -9.76604 -9.56114 -9.44043 -8.99000 -8.71091 -8.24134 -6.21992 -4.23499 0.97725 1.62899 2.09004 2.78979 3.19247 3.26293 3.34032 3.35740 3.70853 3.87069 4.15592 4.29256 4.54671 4.59404 4.72533 4.92153 5.02634 5.10159 5.21714 5.35130 5.35743 5.43935 5.64441 5.73930 5.88548 5.91228 6.00020 6.04362 6.14665 6.20011 6.30696 6.39575 6.47048 6.47758 6.77459 7.06710 7.23169 7.30315 7.31594 7.55316 8.34820 8.71849 8.76703 9.38963 10.90239 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010321 B = 0.006413 C = 0.004642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2712.183285 B = 4364.832067 C = 6030.744897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.239 3.761 3 H 0.058 0.942 4 C -0.526 4.526 5 H 0.077 0.923 6 C 0.077 3.923 7 N -0.891 5.891 8 Si 0.877 3.123 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.261 1.261 12 N -0.985 5.985 13 C 0.096 3.904 14 S 2.783 3.217 15 O -0.975 6.975 16 O -0.989 6.989 17 N -1.114 6.114 18 C 0.255 3.745 19 H 0.097 0.903 20 C -0.164 4.164 21 C 0.188 3.812 22 N -0.265 5.265 23 N -0.283 5.283 24 C 0.351 3.649 25 O -0.432 6.432 26 N -0.474 5.474 27 C 0.069 3.931 28 H 0.050 0.950 29 H 0.035 0.965 30 H 0.059 0.941 31 H 0.266 0.734 32 H 0.041 0.959 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.424 0.576 36 H 0.065 0.935 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.401 0.599 40 H 0.082 0.918 41 H 0.098 0.902 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.371 -9.337 -10.366 15.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.134 3.866 3 H 0.075 0.925 4 C -0.565 4.565 5 H 0.095 0.905 6 C -0.127 4.127 7 N -0.528 5.528 8 Si 0.707 3.293 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.185 1.185 12 N -0.827 5.827 13 C -0.050 4.050 14 S 2.792 3.208 15 O -0.959 6.959 16 O -0.972 6.972 17 N -0.873 5.873 18 C 0.143 3.857 19 H 0.114 0.886 20 C -0.224 4.224 21 C -0.080 4.080 22 N -0.108 5.108 23 N -0.134 5.134 24 C 0.047 3.953 25 O -0.230 6.230 26 N -0.176 5.176 27 C -0.074 4.074 28 H 0.068 0.932 29 H 0.054 0.946 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.059 0.941 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.259 0.741 36 H 0.084 0.916 37 H 0.104 0.896 38 H 0.093 0.907 39 H 0.257 0.743 40 H 0.101 0.899 41 H 0.117 0.883 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.414 -7.583 -10.491 14.446 hybrid contribution -0.700 -0.835 1.052 1.514 sum 5.714 -8.417 -9.438 13.877 Atomic orbital electron populations 1.22422 0.98735 1.01288 0.99357 1.19106 0.91011 0.93461 0.82987 0.92468 1.21078 1.32836 1.14287 0.88308 0.90497 1.24884 0.95551 0.96529 0.95754 1.69859 1.44900 1.40064 0.98006 0.87008 0.80612 0.83954 0.77737 1.20295 1.22107 1.18545 1.57483 1.64686 1.21555 1.38994 1.21366 1.02150 0.81381 1.00139 1.01861 0.72327 0.73256 0.73392 1.93611 1.83341 1.32184 1.86794 1.93554 1.85883 1.76280 1.41488 1.56127 1.32270 1.13942 1.84921 1.18749 0.92255 0.85469 0.89185 0.88557 1.22326 1.01797 1.02583 0.95722 1.24572 1.01154 0.86185 0.96115 1.74075 1.06305 1.23111 1.07328 1.74559 1.22870 1.06381 1.09561 1.21944 0.91858 0.92077 0.89425 1.84986 1.55892 1.54613 1.27518 1.46511 1.29517 1.17475 1.24134 1.22198 0.96171 0.83495 1.05531 0.93200 0.94567 0.92242 0.92420 0.94090 0.90196 0.91408 0.74069 0.91591 0.89619 0.90739 0.74271 0.89950 0.88316 0.88490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.29 8.65 37.16 0.32 -2.97 16 2 C 0.24 5.36 2.21 -69.08 -0.15 5.21 16 3 H 0.06 1.39 5.97 -51.93 -0.31 1.08 16 4 C -0.53 -13.49 8.95 -34.44 -0.31 -13.79 16 5 H 0.08 2.08 7.89 -52.49 -0.41 1.66 16 6 C 0.08 2.10 5.45 -17.82 -0.10 2.00 16 7 N -0.89 -25.99 13.96 55.43 0.77 -25.22 16 8 Si 0.88 21.34 24.37 -169.99 -4.14 17.20 16 9 H -0.28 -6.44 6.87 56.52 0.39 -6.05 16 10 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 11 H -0.26 -6.24 6.53 56.52 0.37 -5.87 16 12 N -0.99 -18.31 3.12 -115.85 -0.36 -18.67 16 13 C 0.10 1.44 9.32 59.85 0.56 1.99 16 14 S 2.78 49.61 6.05 -107.50 -0.65 48.96 16 15 O -0.98 -20.66 16.70 -57.17 -0.95 -21.61 16 16 O -0.99 -17.31 16.00 -57.17 -0.91 -18.22 16 17 N -1.11 -17.55 5.52 -5.88 -0.03 -17.58 16 18 C 0.25 3.44 3.20 -69.08 -0.22 3.21 16 19 H 0.10 1.15 5.42 -51.93 -0.28 0.87 16 20 C -0.16 -1.78 9.50 37.16 0.35 -1.43 16 21 C 0.19 2.90 6.88 -154.12 -1.06 1.84 16 22 N -0.27 -4.73 11.95 32.97 0.39 -4.34 16 23 N -0.28 -5.16 12.22 29.65 0.36 -4.80 16 24 C 0.35 5.45 9.22 -88.77 -0.82 4.63 16 25 O -0.43 -5.33 13.62 -18.32 -0.25 -5.58 16 26 N -0.47 -6.61 3.20 -122.49 -0.39 -7.01 16 27 C 0.07 0.67 11.02 59.84 0.66 1.33 16 28 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 29 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 1.13 6.66 -51.93 -0.35 0.78 16 31 H 0.27 7.39 8.31 -40.82 -0.34 7.06 16 32 H 0.04 0.55 7.03 -51.93 -0.37 0.19 16 33 H 0.08 1.20 6.43 -51.93 -0.33 0.86 16 34 H 0.07 0.88 7.02 -51.93 -0.36 0.51 16 35 H 0.42 6.70 8.64 -34.47 -0.30 6.40 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.93 7.64 -51.93 -0.40 0.54 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.40 2.32 9.06 45.56 0.41 2.73 16 40 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.10 0.93 6.73 -51.93 -0.35 0.58 16 LS Contribution 352.40 15.07 5.31 5.31 Total: -1.00 -36.58 352.40 -6.13 -42.72 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -4.51 Total: 6.81 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -0.77 Total: 2.02 kcal Atomic # 7 Polarization: -78.35 SS G_CDS: 0.74 Total: -77.61 kcal Atomic # 8 Polarization: -43.30 SS G_CDS: -2.12 Total: -45.41 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.14 Total: 17.20 kcal Atomic # 16 Polarization: 49.61 SS G_CDS: -0.65 Total: 48.96 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -36.58 -6.13 -42.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363999432.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.769 kcal (2) G-P(sol) polarization free energy of solvation -36.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds