Wall clock time and date at job start Tue Mar 31 2020 18:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46841 * 2 1 4 4 C 1.50699 * 109.47641 * 120.00234 * 2 1 3 5 5 H 1.07993 * 119.99806 * 119.99942 * 4 2 1 6 6 C 1.37876 * 119.99876 * 300.00112 * 4 2 1 7 7 N 1.31512 * 119.99862 * 179.97438 * 6 4 2 8 8 Si 1.86797 * 120.00166 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47812 * 89.99751 * 8 6 4 10 10 H 1.48499 * 109.47306 * 210.00077 * 8 6 4 11 11 H 1.48508 * 109.47242 * 329.99697 * 8 6 4 12 12 N 1.46500 * 109.47104 * 240.00536 * 2 1 3 13 13 C 1.46502 * 119.99635 * 299.99807 * 12 2 1 14 14 S 1.65601 * 120.00174 * 119.99385 * 12 2 1 15 15 O 1.42105 * 106.40099 * 336.46416 * 14 12 2 16 16 O 1.42097 * 106.40519 * 203.54352 * 14 12 2 17 17 N 1.65605 * 107.21662 * 90.00139 * 14 12 2 18 18 C 1.46499 * 119.99782 * 64.99951 * 17 14 12 19 19 H 1.09002 * 109.47391 * 334.99987 * 18 17 14 20 20 C 1.53000 * 109.46840 * 95.00317 * 18 17 14 21 21 C 1.50699 * 109.47060 * 215.00059 * 18 17 14 22 22 N 1.30331 * 126.36036 * 314.69022 * 21 18 17 23 23 N 1.28530 * 109.99698 * 179.85797 * 22 21 18 24 24 C 1.31032 * 109.85669 * 0.41800 * 23 22 21 25 25 O 1.35541 * 126.44662 * 179.73551 * 24 23 22 26 26 N 1.36305 * 107.10682 * 359.74648 * 24 23 22 27 27 C 1.46496 * 127.12319 * 180.02562 * 26 24 23 28 28 H 1.09006 * 109.46822 * 299.99321 * 1 2 3 29 29 H 1.08996 * 109.47523 * 59.99377 * 1 2 3 30 30 H 1.09003 * 109.46841 * 179.97438 * 1 2 3 31 31 H 0.97004 * 119.99698 * 179.97438 * 7 6 4 32 32 H 1.08994 * 109.46995 * 269.99373 * 13 12 2 33 33 H 1.08995 * 109.47515 * 29.99867 * 13 12 2 34 34 H 1.09003 * 109.46872 * 150.00168 * 13 12 2 35 35 H 0.96993 * 119.99820 * 245.00082 * 17 14 12 36 36 H 1.09004 * 109.46724 * 180.02562 * 20 18 17 37 37 H 1.09001 * 109.47194 * 299.99493 * 20 18 17 38 38 H 1.08992 * 109.47399 * 59.99666 * 20 18 17 39 39 H 0.96699 * 113.99380 * 270.02119 * 25 24 23 40 40 H 1.09007 * 109.47450 * 270.00169 * 27 26 24 41 41 H 1.09005 * 109.47215 * 30.00133 * 27 26 24 42 42 H 1.09004 * 109.47559 * 150.00090 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 1.2304 5 1 2.6534 -1.5884 1.1312 6 6 1.6994 -0.2394 2.4827 7 7 2.1375 -0.8597 3.5564 8 14 0.6248 1.2788 2.6542 9 1 -0.8027 0.8725 2.6999 10 1 0.9760 1.9949 3.9069 11 1 0.8470 2.1764 1.4921 12 7 2.0183 -0.6905 -1.1962 13 6 1.6644 -2.0931 -1.4281 14 16 2.9703 0.1144 -2.2863 15 8 2.6902 1.4975 -2.1192 16 8 2.8226 -0.5642 -3.5260 17 7 4.5437 -0.1040 -1.8182 18 6 5.1357 -1.4438 -1.8418 19 1 4.3473 -2.1911 -1.7513 20 6 5.8829 -1.6479 -3.1612 21 6 6.0987 -1.5878 -0.6916 22 7 6.9965 -0.7183 -0.3221 23 7 7.6432 -1.1604 0.6969 24 6 7.1953 -2.3464 1.0280 25 8 7.6413 -3.1197 2.0480 26 7 6.1968 -2.6564 0.1536 27 6 5.3943 -3.8818 0.1262 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.9035 -0.5281 4.4374 32 1 2.4158 -2.7376 -0.9719 33 1 0.6905 -2.3002 -0.9847 34 1 1.6238 -2.2850 -2.5003 35 1 5.0732 0.6552 -1.5284 36 1 6.3230 -2.6450 -3.1790 37 1 5.1864 -1.5438 -3.9932 38 1 6.6713 -0.9008 -3.2517 39 1 8.3607 -3.7175 1.8028 40 1 5.8814 -4.6210 -0.5099 41 1 5.3010 -4.2777 1.1375 42 1 4.4035 -3.6585 -0.2695 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363999432.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:29 Heat of formation + Delta-G solvation = -48.674121 kcal Electronic energy + Delta-G solvation = -28982.231343 eV Core-core repulsion = 24932.882027 eV Total energy + Delta-G solvation = -4049.349316 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.130 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.13839 -38.83539 -38.45381 -38.15105 -37.40632 -36.95502 -35.89083 -34.54207 -31.81241 -31.55307 -29.93639 -28.54393 -27.35942 -26.92441 -25.14886 -23.43130 -22.72772 -21.90478 -20.45248 -19.87287 -19.13646 -18.79640 -18.34612 -18.08797 -17.58329 -17.15743 -17.06145 -16.18650 -15.84459 -15.52729 -15.30262 -15.09812 -14.63856 -14.54014 -14.27134 -14.14844 -13.86958 -13.75507 -13.62326 -13.55824 -13.46551 -13.23078 -13.07032 -12.96799 -12.88674 -12.80132 -12.71005 -12.33948 -12.18313 -12.03278 -11.51836 -11.37355 -11.33870 -11.20096 -10.82819 -10.74439 -10.19427 -9.77488 -8.32115 -6.34092 -0.42324 0.53367 1.05016 1.26241 1.37097 1.42886 1.59028 1.92430 2.28772 2.47617 2.73211 3.04248 3.10964 3.34465 3.54539 3.68121 3.93836 4.03558 4.17009 4.32768 4.39431 4.46723 4.57885 4.64637 4.66273 4.70566 4.80246 4.85658 4.89269 4.91239 5.03754 5.13355 5.18522 5.30262 5.44763 5.54870 5.56565 5.75854 5.96290 6.29905 6.45461 6.69054 7.31067 7.52950 8.82586 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010321 B = 0.006413 C = 0.004642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2712.183285 B = 4364.832067 C = 6030.744897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.240 3.760 3 H 0.037 0.963 4 C -0.507 4.507 5 H 0.058 0.942 6 C 0.025 3.975 7 N -0.935 5.935 8 Si 0.920 3.080 9 H -0.257 1.257 10 H -0.304 1.304 11 H -0.257 1.257 12 N -0.990 5.990 13 C 0.085 3.915 14 S 2.799 3.201 15 O -1.011 7.011 16 O -0.982 6.982 17 N -1.115 6.115 18 C 0.248 3.752 19 H 0.114 0.886 20 C -0.159 4.159 21 C 0.186 3.814 22 N -0.298 5.298 23 N -0.328 5.328 24 C 0.354 3.646 25 O -0.436 6.436 26 N -0.472 5.472 27 C 0.059 3.941 28 H 0.039 0.961 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.264 0.736 32 H 0.055 0.945 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.423 0.577 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.068 0.932 39 H 0.429 0.571 40 H 0.127 0.873 41 H 0.095 0.905 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.648 -10.931 -12.052 17.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.134 3.866 3 H 0.055 0.945 4 C -0.547 4.547 5 H 0.076 0.924 6 C -0.174 4.174 7 N -0.575 5.575 8 Si 0.749 3.251 9 H -0.183 1.183 10 H -0.232 1.232 11 H -0.181 1.181 12 N -0.831 5.831 13 C -0.060 4.060 14 S 2.808 3.192 15 O -0.995 6.995 16 O -0.966 6.966 17 N -0.875 5.875 18 C 0.138 3.862 19 H 0.132 0.868 20 C -0.218 4.218 21 C -0.084 4.084 22 N -0.140 5.140 23 N -0.179 5.179 24 C 0.048 3.952 25 O -0.239 6.239 26 N -0.174 5.174 27 C -0.082 4.082 28 H 0.057 0.943 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.099 0.901 34 H 0.111 0.889 35 H 0.258 0.742 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.087 0.913 39 H 0.290 0.710 40 H 0.145 0.855 41 H 0.114 0.886 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 5.685 -9.227 -12.212 16.328 hybrid contribution -0.382 -0.476 1.542 1.658 sum 5.303 -9.704 -10.670 15.367 Atomic orbital electron populations 1.22366 0.97005 1.02592 0.99836 1.18831 0.92354 0.92316 0.83077 0.94512 1.21303 1.30978 1.13050 0.89345 0.92393 1.25536 0.97105 0.98910 0.95851 1.69978 1.47215 1.41935 0.98401 0.86296 0.80361 0.81322 0.77155 1.18265 1.23163 1.18128 1.57419 1.65175 1.22992 1.37561 1.21665 1.02725 0.79553 1.02030 1.01310 0.72355 0.72284 0.73279 1.93561 1.84147 1.34563 1.87256 1.93556 1.86059 1.75927 1.41010 1.56012 1.31508 1.15097 1.84848 1.19156 0.92694 0.84519 0.89860 0.86793 1.22308 1.01465 1.04128 0.93910 1.24892 1.00790 0.86175 0.96532 1.73963 1.07563 1.24480 1.07998 1.74434 1.24642 1.08127 1.10708 1.22028 0.91885 0.91879 0.89394 1.84936 1.57211 1.54881 1.26885 1.46723 1.29264 1.18222 1.23169 1.22576 0.96348 0.82759 1.06515 0.94295 0.92448 0.90623 0.92730 0.92629 0.90069 0.88887 0.74248 0.88780 0.89335 0.91268 0.70991 0.85534 0.88606 0.88273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.21 8.65 71.98 0.62 -5.59 16 2 C 0.24 10.47 2.21 44.25 0.10 10.57 16 3 H 0.04 1.78 5.97 -2.39 -0.01 1.76 16 4 C -0.51 -25.79 8.95 25.60 0.23 -25.56 16 5 H 0.06 3.11 7.89 -2.91 -0.02 3.09 16 6 C 0.03 1.37 5.45 84.65 0.46 1.83 16 7 N -0.94 -55.32 13.96 21.45 0.30 -55.02 16 8 Si 0.92 43.69 24.37 68.60 1.67 45.36 16 9 H -0.26 -11.31 6.87 99.48 0.68 -10.63 16 10 H -0.30 -14.76 7.11 99.48 0.71 -14.06 16 11 H -0.26 -11.91 6.53 99.48 0.65 -11.26 16 12 N -0.99 -34.87 3.12 -520.45 -1.62 -36.49 16 13 C 0.09 2.30 9.32 127.77 1.19 3.49 16 14 S 2.80 95.50 6.05 -56.49 -0.34 95.15 16 15 O -1.01 -42.26 16.70 -128.00 -2.14 -44.40 16 16 O -0.98 -31.78 16.00 -128.00 -2.05 -33.83 16 17 N -1.11 -34.08 5.52 -172.52 -0.95 -35.03 16 18 C 0.25 6.22 3.20 44.25 0.14 6.36 16 19 H 0.11 2.41 5.42 -2.39 -0.01 2.39 16 20 C -0.16 -3.03 9.50 71.98 0.68 -2.35 16 21 C 0.19 5.55 6.88 137.67 0.95 6.50 16 22 N -0.30 -10.70 11.95 -49.60 -0.59 -11.30 16 23 N -0.33 -12.12 12.22 -173.67 -2.12 -14.24 16 24 C 0.35 10.78 9.22 179.70 1.66 12.44 16 25 O -0.44 -10.31 13.62 -88.46 -1.20 -11.51 16 26 N -0.47 -12.50 3.20 -652.23 -2.09 -14.59 16 27 C 0.06 0.99 11.02 127.77 1.41 2.40 16 28 H 0.04 1.60 3.27 -2.38 -0.01 1.59 16 29 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.07 2.67 6.66 -2.39 -0.02 2.65 16 31 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 32 H 0.06 1.33 7.03 -2.39 -0.02 1.31 16 33 H 0.08 2.19 6.43 -2.39 -0.02 2.17 16 34 H 0.09 2.06 7.02 -2.39 -0.02 2.04 16 35 H 0.42 13.41 8.64 -96.75 -0.84 12.58 16 36 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.09 1.67 7.64 -2.39 -0.02 1.65 16 38 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.43 4.22 9.06 -74.06 -0.67 3.55 16 40 H 0.13 1.00 8.14 -2.38 -0.02 0.98 16 41 H 0.10 1.70 8.14 -2.38 -0.02 1.68 16 42 H 0.10 1.63 6.73 -2.38 -0.02 1.61 16 Total: -1.00 -79.69 352.40 -4.19 -83.89 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: -0.49 Total: 21.91 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: 7.44 Total: 10.09 kcal Atomic # 7 Polarization: -159.59 SS G_CDS: -7.08 Total: -166.67 kcal Atomic # 8 Polarization: -84.35 SS G_CDS: -5.39 Total: -89.74 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 1.67 Total: 45.36 kcal Atomic # 16 Polarization: 95.50 SS G_CDS: -0.34 Total: 95.15 kcal Total: -79.69 -4.19 -83.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363999432.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.212 kcal (2) G-P(sol) polarization free energy of solvation -79.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds