Wall clock time and date at job start Tue Mar 31 2020 18:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.47064 * 2 1 4 4 C 1.46501 * 119.99882 * 275.78990 * 3 2 1 5 5 C 1.50701 * 109.47105 * 275.00025 * 4 3 2 6 6 H 1.08002 * 120.00176 * 0.02562 * 5 4 3 7 7 C 1.37882 * 120.00389 * 179.97438 * 5 4 3 8 8 N 1.31523 * 119.99370 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00393 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.46678 * 60.00236 * 9 7 5 11 11 H 1.48503 * 109.47121 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.46945 * 300.00268 * 9 7 5 13 13 S 1.65596 * 119.99856 * 95.79209 * 3 2 1 14 14 O 1.42109 * 106.40000 * 160.76271 * 13 3 2 15 15 O 1.42091 * 106.40338 * 27.84165 * 13 3 2 16 16 N 1.65596 * 107.21566 * 274.29905 * 13 3 2 17 17 C 1.46503 * 120.00351 * 293.89014 * 16 13 3 18 18 H 1.08998 * 109.46869 * 24.32059 * 17 16 13 19 19 C 1.53005 * 109.47000 * 264.32925 * 17 16 13 20 20 O 1.42903 * 109.46754 * 295.89077 * 19 17 16 21 21 C 1.50694 * 109.47564 * 144.32677 * 17 16 13 22 22 N 1.30528 * 126.34601 * 44.99720 * 21 17 16 23 23 N 1.28594 * 109.67351 * 179.73158 * 22 21 17 24 24 C 1.30521 * 109.67089 * 0.45405 * 23 22 21 25 25 N 1.35493 * 126.34867 * 225.00238 * 21 17 16 26 26 C 1.46500 * 126.97927 * 359.97438 * 25 21 17 27 27 H 1.09001 * 109.47071 * 64.88608 * 1 2 3 28 28 H 1.08998 * 109.47141 * 184.88405 * 1 2 3 29 29 H 1.08999 * 109.47001 * 304.88358 * 1 2 3 30 30 H 1.09005 * 109.46653 * 239.99744 * 2 1 3 31 31 H 1.09004 * 109.47102 * 120.00535 * 2 1 3 32 32 H 1.09001 * 109.47449 * 35.00037 * 4 3 2 33 33 H 1.08994 * 109.47135 * 155.00193 * 4 3 2 34 34 H 0.96997 * 119.99822 * 179.97438 * 8 7 5 35 35 H 0.97003 * 120.00144 * 113.89664 * 16 13 3 36 36 H 1.08994 * 109.47491 * 55.89280 * 19 17 16 37 37 H 1.09005 * 109.47096 * 175.89498 * 19 17 16 38 38 H 0.96705 * 113.99481 * 180.02562 * 20 19 17 39 39 H 1.07997 * 126.34576 * 179.82960 * 24 23 22 40 40 H 1.09005 * 109.46777 * 270.02354 * 26 25 21 41 41 H 1.09004 * 109.47209 * 30.02083 * 26 25 21 42 42 H 1.08997 * 109.47339 * 150.02661 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1418 2.1144 -1.2623 5 6 3.4702 1.7974 -1.8995 6 1 4.1539 1.1174 -1.4131 7 6 3.8123 2.3747 -3.1040 8 7 2.9795 3.2024 -3.6966 9 14 5.4592 1.9823 -3.8935 10 1 5.5465 0.5236 -4.1571 11 1 5.5843 2.7255 -5.1731 12 1 6.5559 2.3864 -2.9776 13 16 2.4307 2.1135 1.4268 14 8 3.2623 3.2147 1.0869 15 8 2.8372 1.0755 2.3078 16 7 1.0447 2.7546 2.0673 17 6 0.3616 3.8547 1.3821 18 1 0.6148 3.8355 0.3221 19 6 0.8059 5.1873 1.9884 20 8 0.3893 5.2518 3.3538 21 6 -1.1285 3.7004 1.5456 22 7 -1.7592 3.4066 2.6500 23 7 -3.0248 3.3613 2.4268 24 6 -3.2583 3.6146 1.1678 25 7 -2.0618 3.8407 0.5735 26 6 -1.8254 4.1705 -0.8342 27 1 -0.3633 0.4362 -0.9305 28 1 -0.3633 -1.0239 0.0875 29 1 -0.3633 0.5877 0.8430 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.3365 1.8186 -1.9347 33 1 2.0782 3.1851 -1.0682 34 1 3.2203 3.6088 -4.5437 35 1 0.6850 2.4017 2.8962 36 1 1.8917 5.2665 1.9357 37 1 0.3543 6.0084 1.4316 38 1 0.6375 6.0718 3.8024 39 1 -4.2261 3.6433 0.6895 40 1 -1.8461 5.2528 -0.9622 41 1 -0.8514 3.7872 -1.1386 42 1 -2.6027 3.7171 -1.4492 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364950706.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:39 Heat of formation + Delta-G solvation = -37.203986 kcal Electronic energy + Delta-G solvation = -28955.313123 eV Core-core repulsion = 24906.461189 eV Total energy + Delta-G solvation = -4048.851934 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.130 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.10122 -37.64347 -36.64694 -36.17102 -35.23479 -35.14837 -34.68307 -32.77618 -30.59759 -30.08837 -28.29418 -27.64258 -26.70816 -23.65850 -23.23017 -22.37571 -21.79934 -20.59635 -18.98022 -17.86527 -17.30139 -17.11414 -16.70626 -16.44639 -16.31071 -16.09163 -15.32411 -14.94116 -14.65297 -14.46358 -13.94342 -13.85855 -13.51467 -13.43156 -13.32146 -12.97744 -12.69484 -12.19395 -12.10726 -11.91899 -11.78629 -11.60560 -11.45845 -11.43251 -11.38813 -11.08158 -10.99847 -10.59343 -10.51002 -10.31137 -10.20051 -10.11020 -9.97950 -9.88441 -9.53424 -9.19003 -8.54499 -8.20988 -6.18991 -4.21944 1.09178 1.78507 2.40844 2.92646 3.27166 3.30550 3.35617 3.44441 3.93359 4.12775 4.22474 4.36487 4.49507 4.57283 4.75252 4.87101 4.96227 5.14677 5.18686 5.22638 5.30324 5.35332 5.39793 5.59346 5.62719 5.67006 5.78959 5.93466 6.06709 6.12485 6.21469 6.49700 6.54521 6.77638 6.99733 7.15947 7.28013 7.50369 7.67244 7.79955 8.07951 8.78919 8.80330 9.44085 10.89713 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013654 B = 0.004771 C = 0.004473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.257679 B = 5867.073898 C = 6257.680106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.119 3.881 3 N -0.993 5.993 4 C 0.257 3.743 5 C -0.529 4.529 6 H 0.061 0.939 7 C 0.064 3.936 8 N -0.898 5.898 9 Si 0.897 3.103 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.274 1.274 13 S 2.778 3.222 14 O -0.962 6.962 15 O -0.989 6.989 16 N -1.115 6.115 17 C 0.254 3.746 18 H 0.114 0.886 19 C 0.064 3.936 20 O -0.551 6.551 21 C 0.177 3.823 22 N -0.260 5.260 23 N -0.301 5.301 24 C 0.144 3.856 25 N -0.471 5.471 26 C 0.063 3.937 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.048 0.952 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.034 0.966 33 H 0.035 0.965 34 H 0.264 0.736 35 H 0.422 0.578 36 H 0.077 0.923 37 H 0.052 0.948 38 H 0.375 0.625 39 H 0.216 0.784 40 H 0.085 0.915 41 H 0.100 0.900 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.298 3.468 4.586 12.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.007 4.007 3 N -0.836 5.836 4 C 0.135 3.865 5 C -0.568 4.568 6 H 0.079 0.921 7 C -0.138 4.138 8 N -0.537 5.537 9 Si 0.724 3.276 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.199 1.199 13 S 2.786 3.214 14 O -0.945 6.945 15 O -0.973 6.973 16 N -0.873 5.873 17 C 0.143 3.857 18 H 0.131 0.869 19 C -0.017 4.017 20 O -0.355 6.355 21 C -0.092 4.092 22 N -0.101 5.101 23 N -0.141 5.141 24 C -0.143 4.143 25 N -0.162 5.162 26 C -0.080 4.080 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.257 0.743 36 H 0.095 0.905 37 H 0.070 0.930 38 H 0.221 0.779 39 H 0.233 0.767 40 H 0.104 0.896 41 H 0.119 0.881 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.849 2.773 5.906 12.660 hybrid contribution 0.571 0.616 -1.913 2.089 sum -10.278 3.389 3.993 11.535 Atomic orbital electron populations 1.22227 0.97268 1.01446 1.01817 1.21136 0.92907 0.83042 1.03660 1.57780 1.80979 1.21634 1.23159 1.19053 0.97713 0.90674 0.79092 1.21441 1.02370 1.27561 1.05441 0.92113 1.24896 0.97344 0.94713 0.96830 1.69876 1.36102 1.30064 1.17635 0.86572 0.84076 0.78489 0.78449 1.20149 1.21171 1.19946 1.02135 0.73175 0.73459 0.72647 1.93625 1.63696 1.53583 1.83621 1.93553 1.80456 1.57513 1.65811 1.56251 1.47300 1.46574 1.37135 1.18909 0.82262 0.87335 0.97241 0.86860 1.22665 1.00089 0.94989 0.83978 1.86636 1.81922 1.43521 1.23401 1.24645 0.94409 1.04645 0.85521 1.74253 0.98345 1.16654 1.20835 1.74296 1.08645 1.18487 1.12712 1.26393 0.91361 1.04597 0.91957 1.46225 1.07089 1.51767 1.11168 1.22287 1.05619 1.02998 0.77090 0.92385 0.92192 0.93330 0.89606 0.90528 0.94765 0.94746 0.92624 0.74300 0.90453 0.92991 0.77873 0.76735 0.89604 0.88128 0.88572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.38 10.23 37.16 0.38 -2.00 16 2 C 0.12 2.00 6.41 -4.04 -0.03 1.97 16 3 N -0.99 -19.19 2.83 -115.66 -0.33 -19.52 16 4 C 0.26 5.75 4.92 -5.19 -0.03 5.72 16 5 C -0.53 -13.85 9.38 -34.44 -0.32 -14.17 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.06 1.71 5.46 -17.81 -0.10 1.61 16 8 N -0.90 -24.04 13.29 55.43 0.74 -23.31 16 9 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 13 S 2.78 53.64 6.02 -107.50 -0.65 52.99 16 14 O -0.96 -21.38 16.24 -57.17 -0.93 -22.31 16 15 O -0.99 -20.89 16.78 -57.17 -0.96 -21.85 16 16 N -1.11 -17.66 5.45 -5.88 -0.03 -17.69 16 17 C 0.25 3.66 2.97 -69.08 -0.21 3.45 16 18 H 0.11 1.60 5.54 -51.93 -0.29 1.31 16 19 C 0.06 0.83 6.86 37.16 0.26 1.08 16 20 O -0.55 -7.15 12.80 -35.23 -0.45 -7.60 16 21 C 0.18 2.52 6.52 -154.98 -1.01 1.51 16 22 N -0.26 -4.28 11.60 32.80 0.38 -3.90 16 23 N -0.30 -4.61 12.21 29.69 0.36 -4.25 16 24 C 0.14 1.62 12.74 -89.94 -1.15 0.47 16 25 N -0.47 -5.34 3.15 -122.69 -0.39 -5.73 16 26 C 0.06 0.50 11.00 59.85 0.66 1.16 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.09 1.46 8.11 -51.93 -0.42 1.04 16 31 H 0.08 1.26 6.96 -51.93 -0.36 0.89 16 32 H 0.03 0.77 8.11 -51.93 -0.42 0.35 16 33 H 0.03 0.80 6.51 -51.93 -0.34 0.46 16 34 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 35 H 0.42 6.58 8.65 -34.47 -0.30 6.28 16 36 H 0.08 1.07 7.67 -51.93 -0.40 0.67 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.38 3.14 9.12 45.56 0.42 3.56 16 39 H 0.22 1.38 8.06 -52.49 -0.42 0.95 16 40 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.10 0.95 7.06 -51.93 -0.37 0.58 16 42 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 368.49 15.07 5.55 5.55 Total: -1.00 -35.74 368.49 -8.24 -43.98 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -4.98 Total: 7.05 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -1.54 Total: 0.82 kcal Atomic # 7 Polarization: -75.13 SS G_CDS: 0.73 Total: -74.39 kcal Atomic # 8 Polarization: -49.43 SS G_CDS: -2.34 Total: -51.76 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: 53.64 SS G_CDS: -0.65 Total: 52.99 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.74 -8.24 -43.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364950706.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.775 kcal (2) G-P(sol) polarization free energy of solvation -35.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds