Wall clock time and date at job start Tue Mar 31 2020 18:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.47064 * 2 1 4 4 C 1.46501 * 119.99882 * 275.78990 * 3 2 1 5 5 C 1.50701 * 109.47105 * 275.00025 * 4 3 2 6 6 H 1.08002 * 120.00176 * 0.02562 * 5 4 3 7 7 C 1.37882 * 120.00389 * 179.97438 * 5 4 3 8 8 N 1.31523 * 119.99370 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00393 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.46678 * 60.00236 * 9 7 5 11 11 H 1.48503 * 109.47121 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.46945 * 300.00268 * 9 7 5 13 13 S 1.65596 * 119.99856 * 95.79209 * 3 2 1 14 14 O 1.42109 * 106.40000 * 160.76271 * 13 3 2 15 15 O 1.42091 * 106.40338 * 27.84165 * 13 3 2 16 16 N 1.65596 * 107.21566 * 274.29905 * 13 3 2 17 17 C 1.46503 * 120.00351 * 293.89014 * 16 13 3 18 18 H 1.08998 * 109.46869 * 24.32059 * 17 16 13 19 19 C 1.53005 * 109.47000 * 264.32925 * 17 16 13 20 20 O 1.42903 * 109.46754 * 295.89077 * 19 17 16 21 21 C 1.50694 * 109.47564 * 144.32677 * 17 16 13 22 22 N 1.30528 * 126.34601 * 44.99720 * 21 17 16 23 23 N 1.28594 * 109.67351 * 179.73158 * 22 21 17 24 24 C 1.30521 * 109.67089 * 0.45405 * 23 22 21 25 25 N 1.35493 * 126.34867 * 225.00238 * 21 17 16 26 26 C 1.46500 * 126.97927 * 359.97438 * 25 21 17 27 27 H 1.09001 * 109.47071 * 64.88608 * 1 2 3 28 28 H 1.08998 * 109.47141 * 184.88405 * 1 2 3 29 29 H 1.08999 * 109.47001 * 304.88358 * 1 2 3 30 30 H 1.09005 * 109.46653 * 239.99744 * 2 1 3 31 31 H 1.09004 * 109.47102 * 120.00535 * 2 1 3 32 32 H 1.09001 * 109.47449 * 35.00037 * 4 3 2 33 33 H 1.08994 * 109.47135 * 155.00193 * 4 3 2 34 34 H 0.96997 * 119.99822 * 179.97438 * 8 7 5 35 35 H 0.97003 * 120.00144 * 113.89664 * 16 13 3 36 36 H 1.08994 * 109.47491 * 55.89280 * 19 17 16 37 37 H 1.09005 * 109.47096 * 175.89498 * 19 17 16 38 38 H 0.96705 * 113.99481 * 180.02562 * 20 19 17 39 39 H 1.07997 * 126.34576 * 179.82960 * 24 23 22 40 40 H 1.09005 * 109.46777 * 270.02354 * 26 25 21 41 41 H 1.09004 * 109.47209 * 30.02083 * 26 25 21 42 42 H 1.08997 * 109.47339 * 150.02661 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1418 2.1144 -1.2623 5 6 3.4702 1.7974 -1.8995 6 1 4.1539 1.1174 -1.4131 7 6 3.8123 2.3747 -3.1040 8 7 2.9795 3.2024 -3.6966 9 14 5.4592 1.9823 -3.8935 10 1 5.5465 0.5236 -4.1571 11 1 5.5843 2.7255 -5.1731 12 1 6.5559 2.3864 -2.9776 13 16 2.4307 2.1135 1.4268 14 8 3.2623 3.2147 1.0869 15 8 2.8372 1.0755 2.3078 16 7 1.0447 2.7546 2.0673 17 6 0.3616 3.8547 1.3821 18 1 0.6148 3.8355 0.3221 19 6 0.8059 5.1873 1.9884 20 8 0.3893 5.2518 3.3538 21 6 -1.1285 3.7004 1.5456 22 7 -1.7592 3.4066 2.6500 23 7 -3.0248 3.3613 2.4268 24 6 -3.2583 3.6146 1.1678 25 7 -2.0618 3.8407 0.5735 26 6 -1.8254 4.1705 -0.8342 27 1 -0.3633 0.4362 -0.9305 28 1 -0.3633 -1.0239 0.0875 29 1 -0.3633 0.5877 0.8430 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.3365 1.8186 -1.9347 33 1 2.0782 3.1851 -1.0682 34 1 3.2203 3.6088 -4.5437 35 1 0.6850 2.4017 2.8962 36 1 1.8917 5.2665 1.9357 37 1 0.3543 6.0084 1.4316 38 1 0.6375 6.0718 3.8024 39 1 -4.2261 3.6433 0.6895 40 1 -1.8461 5.2528 -0.9622 41 1 -0.8514 3.7872 -1.1386 42 1 -2.6027 3.7171 -1.4492 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364950706.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:38 Heat of formation + Delta-G solvation = -65.977048 kcal Electronic energy + Delta-G solvation = -28956.560816 eV Core-core repulsion = 24906.461189 eV Total energy + Delta-G solvation = -4050.099627 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.130 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.06881 -38.79524 -38.22045 -37.72235 -36.90239 -36.11668 -35.73959 -34.68957 -31.72556 -31.54571 -29.36836 -28.50494 -28.38406 -24.98111 -24.66421 -23.39453 -23.20635 -21.64949 -20.38160 -19.27145 -18.61561 -18.32721 -18.24377 -17.93281 -17.45512 -17.24959 -16.77705 -16.22944 -15.82533 -15.70614 -15.45849 -14.95299 -14.79857 -14.65528 -14.35605 -14.21243 -13.87164 -13.65102 -13.57048 -13.38796 -13.19594 -13.07865 -12.95101 -12.92614 -12.77415 -12.70422 -12.46113 -12.24368 -12.16062 -11.76357 -11.69883 -11.29475 -11.06803 -10.99807 -10.79661 -10.53403 -10.23201 -9.84386 -8.18544 -6.27256 -0.44382 0.84831 1.42190 1.44629 1.51066 1.54426 1.87692 2.07264 2.41753 2.54025 3.05587 3.13183 3.19563 3.35272 3.63503 3.81347 3.92533 3.96608 4.08321 4.21249 4.38153 4.39128 4.41397 4.46096 4.58506 4.64398 4.73677 4.80222 4.97314 4.99965 5.10631 5.16081 5.17705 5.33373 5.51229 5.71434 5.83264 5.95130 6.01626 6.14765 6.78666 6.90130 7.40880 7.79757 8.88412 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013654 B = 0.004771 C = 0.004473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.257679 B = 5867.073898 C = 6257.680106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.112 3.888 3 N -0.995 5.995 4 C 0.272 3.728 5 C -0.551 4.551 6 H 0.047 0.953 7 C 0.023 3.977 8 N -0.915 5.915 9 Si 0.945 3.055 10 H -0.269 1.269 11 H -0.276 1.276 12 H -0.281 1.281 13 S 2.794 3.206 14 O -0.995 6.995 15 O -1.010 7.010 16 N -1.102 6.102 17 C 0.248 3.752 18 H 0.114 0.886 19 C 0.065 3.935 20 O -0.566 6.566 21 C 0.168 3.832 22 N -0.294 5.294 23 N -0.346 5.346 24 C 0.166 3.834 25 N -0.467 5.467 26 C 0.056 3.944 27 H 0.058 0.942 28 H 0.083 0.917 29 H 0.044 0.956 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.036 0.964 33 H 0.027 0.973 34 H 0.267 0.733 35 H 0.425 0.575 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.394 0.606 39 H 0.263 0.737 40 H 0.105 0.895 41 H 0.083 0.917 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.770 3.649 3.566 13.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.014 4.014 3 N -0.837 5.837 4 C 0.149 3.851 5 C -0.590 4.590 6 H 0.065 0.935 7 C -0.177 4.177 8 N -0.554 5.554 9 Si 0.771 3.229 10 H -0.194 1.194 11 H -0.201 1.201 12 H -0.207 1.207 13 S 2.802 3.198 14 O -0.978 6.978 15 O -0.994 6.994 16 N -0.862 5.862 17 C 0.137 3.863 18 H 0.131 0.869 19 C -0.016 4.016 20 O -0.373 6.373 21 C -0.102 4.102 22 N -0.134 5.134 23 N -0.186 5.186 24 C -0.122 4.122 25 N -0.158 5.158 26 C -0.085 4.085 27 H 0.077 0.923 28 H 0.102 0.898 29 H 0.063 0.937 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.054 0.946 33 H 0.044 0.956 34 H 0.076 0.924 35 H 0.260 0.740 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.243 0.757 39 H 0.279 0.721 40 H 0.124 0.876 41 H 0.102 0.898 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -12.322 2.953 4.888 13.581 hybrid contribution 0.961 0.578 -1.590 1.946 sum -11.361 3.531 3.298 12.345 Atomic orbital electron populations 1.22115 0.94880 1.02921 1.01670 1.21331 0.94890 0.81590 1.03552 1.57655 1.81359 1.22606 1.22054 1.18703 0.96021 0.90440 0.79904 1.21775 1.03787 1.27512 1.05963 0.93455 1.25528 1.00049 0.94778 0.97374 1.69928 1.37152 1.30428 1.17924 0.85810 0.80577 0.78717 0.77812 1.19403 1.20134 1.20660 1.01421 0.73353 0.72692 0.72290 1.93580 1.65392 1.54684 1.84107 1.93514 1.81341 1.58264 1.66304 1.55838 1.46502 1.46898 1.36975 1.19060 0.82766 0.87262 0.97163 0.86877 1.22615 0.99473 0.95014 0.84457 1.86596 1.82044 1.45205 1.23489 1.24412 0.94323 1.05398 0.86063 1.74160 0.99180 1.17827 1.22265 1.74212 1.08354 1.20898 1.15142 1.27250 0.92675 1.01369 0.90903 1.46398 1.06525 1.50966 1.11879 1.22569 1.05835 1.04562 0.75518 0.92266 0.89822 0.93703 0.90038 0.90305 0.94613 0.95551 0.92355 0.73965 0.91683 0.90534 0.75732 0.72119 0.87642 0.89798 0.85560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.18 10.23 71.98 0.74 -3.45 16 2 C 0.11 3.70 6.41 86.38 0.55 4.25 16 3 N -0.99 -38.55 2.83 -519.84 -1.47 -40.01 16 4 C 0.27 12.25 4.92 85.63 0.42 12.67 16 5 C -0.55 -29.01 9.38 25.60 0.24 -28.77 16 6 H 0.05 2.56 7.81 -2.91 -0.02 2.53 16 7 C 0.02 1.22 5.46 84.65 0.46 1.68 16 8 N -0.91 -48.53 13.29 21.45 0.28 -48.24 16 9 Si 0.95 42.23 29.54 68.60 2.03 44.25 16 10 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 11 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 12 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 13 S 2.79 109.28 6.02 -56.49 -0.34 108.94 16 14 O -0.99 -45.11 16.24 -128.00 -2.08 -47.19 16 15 O -1.01 -43.12 16.78 -128.00 -2.15 -45.27 16 16 N -1.10 -35.06 5.45 -172.52 -0.94 -36.00 16 17 C 0.25 7.06 2.97 44.24 0.13 7.19 16 18 H 0.11 3.18 5.54 -2.39 -0.01 3.17 16 19 C 0.07 1.67 6.86 71.98 0.49 2.16 16 20 O -0.57 -14.42 12.80 -148.98 -1.91 -16.32 16 21 C 0.17 4.61 6.52 137.97 0.90 5.51 16 22 N -0.29 -9.46 11.60 -50.16 -0.58 -10.04 16 23 N -0.35 -10.14 12.21 -59.99 -0.73 -10.87 16 24 C 0.17 3.25 12.74 180.11 2.30 5.54 16 25 N -0.47 -9.51 3.15 -542.07 -1.71 -11.22 16 26 C 0.06 0.75 11.00 127.77 1.41 2.16 16 27 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.08 2.75 8.11 -2.38 -0.02 2.73 16 31 H 0.08 2.56 6.96 -2.38 -0.02 2.54 16 32 H 0.04 1.59 8.11 -2.39 -0.02 1.57 16 33 H 0.03 1.24 6.51 -2.39 -0.02 1.22 16 34 H 0.27 13.47 8.31 -92.71 -0.77 12.70 16 35 H 0.42 13.36 8.65 -96.74 -0.84 12.52 16 36 H 0.07 1.81 7.67 -2.39 -0.02 1.79 16 37 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 38 H 0.39 6.30 9.12 -74.05 -0.68 5.62 16 39 H 0.26 2.16 8.06 -2.91 -0.02 2.14 16 40 H 0.11 1.01 8.14 -2.38 -0.02 0.99 16 41 H 0.08 1.45 7.06 -2.39 -0.02 1.44 16 42 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -76.77 368.49 -2.40 -79.17 By element: Atomic # 1 Polarization: 24.30 SS G_CDS: -0.44 Total: 23.86 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: 7.64 Total: 8.95 kcal Atomic # 7 Polarization: -151.24 SS G_CDS: -5.15 Total: -156.39 kcal Atomic # 8 Polarization: -102.65 SS G_CDS: -6.13 Total: -108.78 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.25 kcal Atomic # 16 Polarization: 109.28 SS G_CDS: -0.34 Total: 108.94 kcal Total: -76.77 -2.40 -79.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364950706.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.191 kcal (2) G-P(sol) polarization free energy of solvation -76.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds