Wall clock time and date at job start Tue Mar 31 2020 18:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46505 * 109.47013 * 2 1 4 4 C 1.46490 * 120.00019 * 274.43034 * 3 2 1 5 5 C 1.50698 * 109.47301 * 274.99574 * 4 3 2 6 6 H 1.08004 * 119.99840 * 0.02562 * 5 4 3 7 7 C 1.37883 * 120.00117 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00043 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99858 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47227 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47157 * 120.00419 * 9 7 5 12 12 H 1.48504 * 109.47152 * 240.00177 * 9 7 5 13 13 S 1.65604 * 119.99864 * 94.43028 * 3 2 1 14 14 O 1.42099 * 106.40062 * 154.54525 * 13 3 2 15 15 O 1.42096 * 106.40250 * 21.62126 * 13 3 2 16 16 N 1.65607 * 107.21681 * 268.08345 * 13 3 2 17 17 C 1.46499 * 120.00156 * 294.41328 * 16 13 3 18 18 H 1.08998 * 109.46779 * 354.66566 * 17 16 13 19 19 C 1.52995 * 109.47505 * 114.66838 * 17 16 13 20 20 O 1.42897 * 109.46976 * 64.99855 * 19 17 16 21 21 C 1.50699 * 109.46732 * 234.67143 * 17 16 13 22 22 N 1.30513 * 126.35081 * 317.45929 * 21 17 16 23 23 N 1.28601 * 109.67720 * 179.82569 * 22 21 17 24 24 C 1.30523 * 109.66916 * 0.45263 * 23 22 21 25 25 N 1.35493 * 107.30718 * 359.72690 * 24 23 22 26 26 C 1.46497 * 126.97977 * 180.02562 * 25 24 23 27 27 H 1.08996 * 109.47487 * 64.63241 * 1 2 3 28 28 H 1.08999 * 109.46837 * 184.63339 * 1 2 3 29 29 H 1.09001 * 109.47150 * 304.62963 * 1 2 3 30 30 H 1.08996 * 109.47526 * 239.99846 * 2 1 3 31 31 H 1.09004 * 109.47612 * 119.99895 * 2 1 3 32 32 H 1.08996 * 109.47320 * 35.00173 * 4 3 2 33 33 H 1.09001 * 109.46995 * 154.99807 * 4 3 2 34 34 H 0.96996 * 119.99905 * 179.97438 * 8 7 5 35 35 H 0.97001 * 119.99667 * 114.40601 * 16 13 3 36 36 H 1.08994 * 109.47523 * 184.99878 * 19 17 16 37 37 H 1.08998 * 109.47011 * 305.00638 * 19 17 16 38 38 H 0.96701 * 114.00511 * 180.02562 * 20 19 17 39 39 H 1.07997 * 126.34670 * 179.72868 * 24 23 22 40 40 H 1.08998 * 109.47457 * 274.19722 * 26 25 24 41 41 H 1.09005 * 109.47248 * 34.19693 * 26 25 24 42 42 H 1.09003 * 109.47103 * 154.19538 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1700 2.1045 -1.2649 5 6 3.5123 1.7827 -1.8696 6 1 4.1849 1.1067 -1.3626 7 6 3.8813 2.3506 -3.0707 8 7 3.0621 3.1734 -3.6883 9 14 5.5448 1.9511 -3.8206 10 1 6.2726 1.0062 -2.9360 11 1 5.3498 1.3290 -5.1549 12 1 6.3344 3.2003 -3.9676 13 16 2.3987 2.1250 1.4299 14 8 3.3521 3.1313 1.1175 15 8 2.6434 1.0873 2.3693 16 7 1.0385 2.9144 1.9489 17 6 0.5049 4.0393 1.1768 18 1 1.1821 4.2690 0.3542 19 6 -0.8697 3.6675 0.6173 20 8 -1.7880 3.4797 1.6959 21 6 0.3739 5.2450 2.0712 22 7 -0.0793 5.2548 3.2951 23 7 -0.0475 6.4538 3.7591 24 6 0.4185 7.2649 2.8488 25 7 0.6992 6.5210 1.7517 26 6 1.2443 6.9991 0.4787 27 1 -0.3634 0.4402 -0.9285 28 1 -0.3633 -1.0243 0.0830 29 1 -0.3633 0.5840 0.8456 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.3800 1.8033 -1.9527 33 1 2.1021 3.1767 -1.0807 34 1 3.3218 3.5731 -4.5330 35 1 0.5951 2.6318 2.7641 36 1 -1.2276 4.4685 -0.0293 37 1 -0.7906 2.7446 0.0428 38 1 -2.6819 3.2410 1.4145 39 1 0.5550 8.3313 2.9511 40 1 0.4301 7.3434 -0.1589 41 1 1.9332 7.8230 0.6650 42 1 1.7754 6.1865 -0.0172 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364950724.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:43 Heat of formation + Delta-G solvation = -38.539278 kcal Electronic energy + Delta-G solvation = -28842.553991 eV Core-core repulsion = 24793.644155 eV Total energy + Delta-G solvation = -4048.909836 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.130 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.02688 -37.67772 -36.70382 -36.13376 -35.25186 -35.09686 -34.66637 -32.78218 -30.55231 -30.08469 -28.30356 -27.58910 -26.70277 -23.62975 -23.23636 -22.31129 -21.78842 -20.56743 -19.02280 -17.86245 -17.36861 -17.06452 -16.62833 -16.47271 -16.30260 -15.95270 -15.47503 -14.92835 -14.81487 -14.37221 -13.88669 -13.84889 -13.47359 -13.40386 -13.23918 -13.01407 -12.57621 -12.21758 -12.09527 -11.99234 -11.77851 -11.55179 -11.48544 -11.41664 -11.37259 -11.09778 -10.98536 -10.59369 -10.49133 -10.26608 -10.14176 -10.10053 -10.04313 -9.84470 -9.55224 -9.13723 -8.56412 -8.20021 -6.19649 -4.22411 1.08571 1.85821 2.49055 2.99498 3.23090 3.31375 3.36770 3.42628 4.03325 4.09721 4.20261 4.35531 4.55619 4.63104 4.76255 4.88820 5.00031 5.10509 5.17274 5.22838 5.34821 5.38026 5.42311 5.50666 5.62758 5.69418 5.82149 5.96379 6.09874 6.19041 6.24224 6.52028 6.55475 6.84525 7.00782 7.16549 7.28935 7.51084 7.61640 7.79823 8.07455 8.80887 8.85224 9.43679 10.88890 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012606 B = 0.004992 C = 0.004295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.583805 B = 5607.652225 C = 6517.155652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.118 3.882 3 N -0.992 5.992 4 C 0.257 3.743 5 C -0.526 4.526 6 H 0.062 0.938 7 C 0.063 3.937 8 N -0.898 5.898 9 Si 0.896 3.104 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.282 1.282 13 S 2.777 3.223 14 O -0.966 6.966 15 O -0.990 6.990 16 N -1.113 6.113 17 C 0.250 3.750 18 H 0.120 0.880 19 C 0.070 3.930 20 O -0.551 6.551 21 C 0.176 3.824 22 N -0.263 5.263 23 N -0.303 5.303 24 C 0.142 3.858 25 N -0.472 5.472 26 C 0.063 3.937 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.038 0.962 33 H 0.029 0.971 34 H 0.263 0.737 35 H 0.423 0.577 36 H 0.053 0.947 37 H 0.072 0.928 38 H 0.376 0.624 39 H 0.217 0.783 40 H 0.085 0.915 41 H 0.094 0.906 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.724 4.742 4.209 11.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.008 4.008 3 N -0.834 5.834 4 C 0.135 3.865 5 C -0.565 4.565 6 H 0.080 0.920 7 C -0.139 4.139 8 N -0.537 5.537 9 Si 0.724 3.276 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.208 1.208 13 S 2.785 3.215 14 O -0.949 6.949 15 O -0.974 6.974 16 N -0.870 5.870 17 C 0.138 3.862 18 H 0.138 0.862 19 C -0.011 4.011 20 O -0.355 6.355 21 C -0.094 4.094 22 N -0.103 5.103 23 N -0.143 5.143 24 C -0.145 4.145 25 N -0.163 5.163 26 C -0.080 4.080 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.056 0.944 33 H 0.047 0.953 34 H 0.073 0.927 35 H 0.258 0.742 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.222 0.778 39 H 0.233 0.767 40 H 0.104 0.896 41 H 0.113 0.887 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.794 4.567 5.977 11.572 hybrid contribution 0.461 0.394 -2.112 2.197 sum -8.333 4.961 3.865 10.440 Atomic orbital electron populations 1.22281 0.97167 1.01602 1.02046 1.21157 0.93115 0.82904 1.03667 1.57760 1.81049 1.21708 1.22883 1.19046 0.97695 0.90543 0.79170 1.21532 1.01729 1.27717 1.05518 0.91994 1.24900 0.97424 0.94801 0.96756 1.69899 1.36138 1.30638 1.17045 0.86468 0.83864 0.78407 0.78895 1.19601 1.20954 1.20839 1.02125 0.73266 0.73290 0.72830 1.93623 1.57398 1.59579 1.84262 1.93548 1.84165 1.57129 1.62521 1.56188 1.49913 1.43317 1.37608 1.18969 0.95714 0.80820 0.90651 0.86222 1.22562 0.88626 1.00847 0.89084 1.86639 1.23027 1.92954 1.32885 1.24850 1.02108 0.86281 0.96134 1.74215 1.16920 1.13058 1.06122 1.74273 1.18149 0.96795 1.25059 1.26382 1.03579 1.00611 0.83925 1.46223 1.47757 1.07801 1.14535 1.22283 1.00387 1.02926 0.82396 0.92177 0.92153 0.92847 0.89605 0.90470 0.94423 0.95278 0.92749 0.74203 0.92853 0.90958 0.77818 0.76706 0.89605 0.88703 0.88010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 10.05 37.16 0.37 -1.83 16 2 C 0.12 1.91 6.39 -4.04 -0.03 1.88 16 3 N -0.99 -18.82 2.82 -115.67 -0.33 -19.15 16 4 C 0.26 5.70 5.09 -5.20 -0.03 5.67 16 5 C -0.53 -13.66 9.38 -34.44 -0.32 -13.98 16 6 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 7 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 8 N -0.90 -23.89 13.29 55.43 0.74 -23.15 16 9 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 10 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 S 2.78 54.05 6.00 -107.50 -0.64 53.41 16 14 O -0.97 -22.17 16.65 -57.17 -0.95 -23.13 16 15 O -0.99 -20.81 16.66 -57.17 -0.95 -21.76 16 16 N -1.11 -17.82 5.36 -5.89 -0.03 -17.85 16 17 C 0.25 3.68 3.11 -69.09 -0.22 3.46 16 18 H 0.12 1.80 4.87 -51.93 -0.25 1.55 16 19 C 0.07 0.83 6.87 37.15 0.26 1.08 16 20 O -0.55 -6.55 12.84 -35.23 -0.45 -7.00 16 21 C 0.18 2.72 6.50 -154.99 -1.01 1.72 16 22 N -0.26 -4.62 11.88 32.80 0.39 -4.23 16 23 N -0.30 -4.98 12.21 29.69 0.36 -4.62 16 24 C 0.14 1.77 12.74 -89.94 -1.15 0.62 16 25 N -0.47 -6.02 3.15 -122.69 -0.39 -6.41 16 26 C 0.06 0.57 11.07 59.85 0.66 1.24 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.66 7.94 -51.93 -0.41 0.24 16 30 H 0.09 1.42 8.10 -51.93 -0.42 0.99 16 31 H 0.08 1.23 6.91 -51.93 -0.36 0.87 16 32 H 0.04 0.84 8.11 -51.93 -0.42 0.42 16 33 H 0.03 0.66 6.25 -51.93 -0.32 0.34 16 34 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 35 H 0.42 6.54 8.96 -34.47 -0.31 6.24 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.82 7.75 -51.93 -0.40 0.42 16 38 H 0.38 2.76 9.12 45.56 0.42 3.18 16 39 H 0.22 1.58 8.06 -52.49 -0.42 1.16 16 40 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.10 1.09 6.92 -51.93 -0.36 0.73 16 LS Contribution 368.20 15.07 5.55 5.55 Total: -1.00 -36.27 368.20 -8.21 -44.48 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -4.93 Total: 6.74 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -1.55 Total: 1.43 kcal Atomic # 7 Polarization: -76.14 SS G_CDS: 0.74 Total: -75.40 kcal Atomic # 8 Polarization: -49.53 SS G_CDS: -2.36 Total: -51.89 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: 54.05 SS G_CDS: -0.64 Total: 53.41 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.27 -8.21 -44.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364950724.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.939 kcal (2) G-P(sol) polarization free energy of solvation -36.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds