Wall clock time and date at job start Tue Mar 31 2020 18:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46505 * 109.47013 * 2 1 4 4 C 1.46490 * 120.00019 * 274.43034 * 3 2 1 5 5 C 1.50698 * 109.47301 * 274.99574 * 4 3 2 6 6 H 1.08004 * 119.99840 * 0.02562 * 5 4 3 7 7 C 1.37883 * 120.00117 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00043 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99858 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47227 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47157 * 120.00419 * 9 7 5 12 12 H 1.48504 * 109.47152 * 240.00177 * 9 7 5 13 13 S 1.65604 * 119.99864 * 94.43028 * 3 2 1 14 14 O 1.42099 * 106.40062 * 154.54525 * 13 3 2 15 15 O 1.42096 * 106.40250 * 21.62126 * 13 3 2 16 16 N 1.65607 * 107.21681 * 268.08345 * 13 3 2 17 17 C 1.46499 * 120.00156 * 294.41328 * 16 13 3 18 18 H 1.08998 * 109.46779 * 354.66566 * 17 16 13 19 19 C 1.52995 * 109.47505 * 114.66838 * 17 16 13 20 20 O 1.42897 * 109.46976 * 64.99855 * 19 17 16 21 21 C 1.50699 * 109.46732 * 234.67143 * 17 16 13 22 22 N 1.30513 * 126.35081 * 317.45929 * 21 17 16 23 23 N 1.28601 * 109.67720 * 179.82569 * 22 21 17 24 24 C 1.30523 * 109.66916 * 0.45263 * 23 22 21 25 25 N 1.35493 * 107.30718 * 359.72690 * 24 23 22 26 26 C 1.46497 * 126.97977 * 180.02562 * 25 24 23 27 27 H 1.08996 * 109.47487 * 64.63241 * 1 2 3 28 28 H 1.08999 * 109.46837 * 184.63339 * 1 2 3 29 29 H 1.09001 * 109.47150 * 304.62963 * 1 2 3 30 30 H 1.08996 * 109.47526 * 239.99846 * 2 1 3 31 31 H 1.09004 * 109.47612 * 119.99895 * 2 1 3 32 32 H 1.08996 * 109.47320 * 35.00173 * 4 3 2 33 33 H 1.09001 * 109.46995 * 154.99807 * 4 3 2 34 34 H 0.96996 * 119.99905 * 179.97438 * 8 7 5 35 35 H 0.97001 * 119.99667 * 114.40601 * 16 13 3 36 36 H 1.08994 * 109.47523 * 184.99878 * 19 17 16 37 37 H 1.08998 * 109.47011 * 305.00638 * 19 17 16 38 38 H 0.96701 * 114.00511 * 180.02562 * 20 19 17 39 39 H 1.07997 * 126.34670 * 179.72868 * 24 23 22 40 40 H 1.08998 * 109.47457 * 274.19722 * 26 25 24 41 41 H 1.09005 * 109.47248 * 34.19693 * 26 25 24 42 42 H 1.09003 * 109.47103 * 154.19538 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1700 2.1045 -1.2649 5 6 3.5123 1.7827 -1.8696 6 1 4.1849 1.1067 -1.3626 7 6 3.8813 2.3506 -3.0707 8 7 3.0621 3.1734 -3.6883 9 14 5.5448 1.9511 -3.8206 10 1 6.2726 1.0062 -2.9360 11 1 5.3498 1.3290 -5.1549 12 1 6.3344 3.2003 -3.9676 13 16 2.3987 2.1250 1.4299 14 8 3.3521 3.1313 1.1175 15 8 2.6434 1.0873 2.3693 16 7 1.0385 2.9144 1.9489 17 6 0.5049 4.0393 1.1768 18 1 1.1821 4.2690 0.3542 19 6 -0.8697 3.6675 0.6173 20 8 -1.7880 3.4797 1.6959 21 6 0.3739 5.2450 2.0712 22 7 -0.0793 5.2548 3.2951 23 7 -0.0475 6.4538 3.7591 24 6 0.4185 7.2649 2.8488 25 7 0.6992 6.5210 1.7517 26 6 1.2443 6.9991 0.4787 27 1 -0.3634 0.4402 -0.9285 28 1 -0.3633 -1.0243 0.0830 29 1 -0.3633 0.5840 0.8456 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.3800 1.8033 -1.9527 33 1 2.1021 3.1767 -1.0807 34 1 3.3218 3.5731 -4.5330 35 1 0.5951 2.6318 2.7641 36 1 -1.2276 4.4685 -0.0293 37 1 -0.7906 2.7446 0.0428 38 1 -2.6819 3.2410 1.4145 39 1 0.5550 8.3313 2.9511 40 1 0.4301 7.3434 -0.1589 41 1 1.9332 7.8230 0.6650 42 1 1.7754 6.1865 -0.0172 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364950724.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:42 Heat of formation + Delta-G solvation = -68.070461 kcal Electronic energy + Delta-G solvation = -28843.834560 eV Core-core repulsion = 24793.644155 eV Total energy + Delta-G solvation = -4050.190404 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.130 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.08313 -38.76802 -38.30109 -37.64655 -36.92828 -36.10785 -35.73893 -34.67718 -31.71823 -31.50473 -29.37244 -28.46451 -28.42234 -24.91557 -24.66635 -23.39775 -23.16676 -21.67350 -20.42925 -19.25734 -18.70413 -18.30853 -18.05218 -17.94623 -17.53799 -17.20746 -16.79558 -16.36354 -15.85893 -15.72192 -15.37204 -14.90210 -14.75912 -14.62256 -14.29842 -14.23000 -13.86539 -13.60334 -13.56162 -13.33521 -13.18984 -13.10555 -13.01872 -12.86522 -12.75284 -12.65053 -12.50718 -12.19681 -12.15156 -11.70474 -11.63356 -11.34259 -11.09376 -10.94326 -10.80660 -10.53912 -10.25064 -9.80905 -8.17971 -6.26293 -0.45512 0.83837 1.39644 1.43653 1.53486 1.56335 1.86361 2.02239 2.42146 2.56413 3.06715 3.13191 3.20646 3.35378 3.63394 3.80987 3.89016 3.96176 4.14904 4.23577 4.37087 4.42738 4.49710 4.52335 4.58692 4.69224 4.76534 4.78718 4.99117 5.08018 5.14858 5.18432 5.22652 5.46165 5.55725 5.73933 5.86085 5.92751 6.05287 6.15992 6.80353 6.96172 7.41801 7.76382 8.89116 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012606 B = 0.004992 C = 0.004295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.583805 B = 5607.652225 C = 6517.155652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.109 3.891 3 N -0.991 5.991 4 C 0.272 3.728 5 C -0.547 4.547 6 H 0.046 0.954 7 C 0.023 3.977 8 N -0.915 5.915 9 Si 0.944 3.056 10 H -0.277 1.277 11 H -0.272 1.272 12 H -0.280 1.280 13 S 2.793 3.207 14 O -1.005 7.005 15 O -1.009 7.009 16 N -1.100 6.100 17 C 0.244 3.756 18 H 0.113 0.887 19 C 0.077 3.923 20 O -0.567 6.567 21 C 0.161 3.839 22 N -0.297 5.297 23 N -0.349 5.349 24 C 0.162 3.838 25 N -0.472 5.472 26 C 0.056 3.944 27 H 0.061 0.939 28 H 0.084 0.916 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.039 0.961 33 H 0.024 0.976 34 H 0.267 0.733 35 H 0.427 0.573 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.395 0.605 39 H 0.265 0.735 40 H 0.112 0.888 41 H 0.122 0.878 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.616 5.540 3.476 12.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.017 4.017 3 N -0.833 5.833 4 C 0.149 3.851 5 C -0.586 4.586 6 H 0.064 0.936 7 C -0.177 4.177 8 N -0.555 5.555 9 Si 0.770 3.230 10 H -0.202 1.202 11 H -0.198 1.198 12 H -0.206 1.206 13 S 2.801 3.199 14 O -0.988 6.988 15 O -0.993 6.993 16 N -0.860 5.860 17 C 0.133 3.867 18 H 0.130 0.870 19 C -0.004 4.004 20 O -0.374 6.374 21 C -0.110 4.110 22 N -0.137 5.137 23 N -0.188 5.188 24 C -0.126 4.126 25 N -0.163 5.163 26 C -0.085 4.085 27 H 0.080 0.920 28 H 0.103 0.897 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.057 0.943 33 H 0.042 0.958 34 H 0.076 0.924 35 H 0.263 0.737 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.244 0.756 39 H 0.280 0.720 40 H 0.131 0.869 41 H 0.140 0.860 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.707 5.348 5.236 12.257 hybrid contribution 0.729 0.196 -1.860 2.008 sum -8.978 5.544 3.375 11.079 Atomic orbital electron populations 1.22203 0.94210 1.03371 1.02420 1.21396 0.95621 0.81231 1.03409 1.57594 1.81430 1.22740 1.21515 1.18715 0.95890 0.90480 0.80019 1.21835 1.03201 1.27606 1.05958 0.93593 1.25504 1.00089 0.94888 0.97229 1.69944 1.37169 1.31014 1.17388 0.85722 0.80679 0.78110 0.78461 1.20183 1.19782 1.20573 1.01398 0.73336 0.72621 0.72544 1.93566 1.59602 1.60811 1.84834 1.93511 1.84845 1.57860 1.63050 1.55769 1.48909 1.43574 1.37796 1.19180 0.97201 0.80241 0.90104 0.86970 1.22472 0.87237 1.01747 0.88933 1.86599 1.24385 1.93117 1.33313 1.24888 1.02629 0.87495 0.95949 1.74110 1.18232 1.14123 1.07215 1.74175 1.20600 0.97134 1.26897 1.27275 1.00677 1.02063 0.82605 1.46455 1.47167 1.06986 1.15659 1.22572 1.01773 1.02919 0.81237 0.91984 0.89717 0.92225 0.90188 0.90421 0.94278 0.95795 0.92383 0.73718 0.90933 0.90385 0.75560 0.71968 0.86926 0.85960 0.90028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.89 10.05 71.98 0.72 -3.17 16 2 C 0.11 3.46 6.39 86.38 0.55 4.01 16 3 N -0.99 -37.64 2.82 -519.87 -1.47 -39.11 16 4 C 0.27 12.09 5.09 85.63 0.44 12.52 16 5 C -0.55 -28.62 9.38 25.60 0.24 -28.38 16 6 H 0.05 2.49 7.81 -2.91 -0.02 2.47 16 7 C 0.02 1.21 5.46 84.66 0.46 1.67 16 8 N -0.92 -48.24 13.29 21.45 0.28 -47.96 16 9 Si 0.94 42.16 29.54 68.60 2.03 44.18 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 12 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 13 S 2.79 110.04 6.00 -56.49 -0.34 109.71 16 14 O -1.01 -47.25 16.65 -128.00 -2.13 -49.38 16 15 O -1.01 -42.82 16.66 -128.00 -2.13 -44.95 16 16 N -1.10 -35.24 5.36 -172.53 -0.92 -36.17 16 17 C 0.24 7.07 3.11 44.24 0.14 7.21 16 18 H 0.11 3.40 4.87 -2.39 -0.01 3.39 16 19 C 0.08 1.71 6.87 71.98 0.49 2.21 16 20 O -0.57 -12.67 12.84 -148.98 -1.91 -14.59 16 21 C 0.16 4.90 6.50 137.98 0.90 5.80 16 22 N -0.30 -10.35 11.88 -50.16 -0.60 -10.95 16 23 N -0.35 -11.21 12.21 -59.99 -0.73 -11.94 16 24 C 0.16 3.67 12.74 180.11 2.30 5.96 16 25 N -0.47 -11.27 3.15 -542.07 -1.71 -12.98 16 26 C 0.06 0.91 11.07 127.77 1.41 2.32 16 27 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.06 1.35 7.94 -2.39 -0.02 1.33 16 30 H 0.08 2.62 8.10 -2.39 -0.02 2.60 16 31 H 0.08 2.45 6.91 -2.38 -0.02 2.44 16 32 H 0.04 1.73 8.11 -2.39 -0.02 1.71 16 33 H 0.02 1.10 6.25 -2.39 -0.01 1.08 16 34 H 0.27 13.29 8.31 -92.71 -0.77 12.52 16 35 H 0.43 13.23 8.96 -96.74 -0.87 12.37 16 36 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.08 1.64 7.75 -2.39 -0.02 1.62 16 38 H 0.39 5.06 9.12 -74.06 -0.68 4.38 16 39 H 0.26 2.84 8.06 -2.91 -0.02 2.82 16 40 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.12 1.29 8.14 -2.38 -0.02 1.27 16 42 H 0.08 1.70 6.92 -2.39 -0.02 1.68 16 Total: -1.00 -78.60 368.20 -2.45 -81.05 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: -0.47 Total: 22.93 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: 7.65 Total: 10.15 kcal Atomic # 7 Polarization: -153.96 SS G_CDS: -5.14 Total: -159.11 kcal Atomic # 8 Polarization: -102.74 SS G_CDS: -6.18 Total: -108.92 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.18 kcal Atomic # 16 Polarization: 110.04 SS G_CDS: -0.34 Total: 109.71 kcal Total: -78.60 -2.45 -81.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364950724.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.977 kcal (2) G-P(sol) polarization free energy of solvation -78.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds