Wall clock time and date at job start Tue Mar 31 2020 18:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50699 * 109.46866 * 240.00048 * 2 1 3 5 5 H 1.08003 * 120.00271 * 240.00086 * 4 2 1 6 6 C 1.37879 * 120.00161 * 59.99586 * 4 2 1 7 7 N 1.31509 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46959 * 90.00076 * 8 6 4 10 10 H 1.48491 * 109.47193 * 210.00468 * 8 6 4 11 11 H 1.48498 * 109.46715 * 330.00553 * 8 6 4 12 12 N 1.46500 * 109.47249 * 120.00351 * 2 1 3 13 13 C 1.46499 * 120.00401 * 59.99673 * 12 2 1 14 14 S 1.65600 * 119.99854 * 239.99896 * 12 2 1 15 15 O 1.42101 * 106.40246 * 203.53898 * 14 12 2 16 16 O 1.42103 * 106.40034 * 336.45770 * 14 12 2 17 17 N 1.65601 * 107.21882 * 89.99628 * 14 12 2 18 18 C 1.46503 * 119.99776 * 65.00378 * 17 14 12 19 19 H 1.08993 * 109.46893 * 334.99580 * 18 17 14 20 20 C 1.52996 * 109.47477 * 94.99863 * 18 17 14 21 21 O 1.42904 * 109.47043 * 64.99510 * 20 18 17 22 22 C 1.50703 * 109.46757 * 214.99716 * 18 17 14 23 23 N 1.30512 * 126.34951 * 315.02334 * 22 18 17 24 24 N 1.28604 * 109.67556 * 179.97438 * 23 22 18 25 25 C 1.30522 * 109.66884 * 0.02562 * 24 23 22 26 26 N 1.35493 * 107.30667 * 359.76840 * 25 24 23 27 27 C 1.46503 * 126.97754 * 180.22072 * 26 25 24 28 28 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 29 29 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 30 30 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 31 31 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 32 32 H 1.08993 * 109.47066 * 89.99858 * 13 12 2 33 33 H 1.09004 * 109.47229 * 210.00249 * 13 12 2 34 34 H 1.09000 * 109.47083 * 330.00074 * 13 12 2 35 35 H 0.97000 * 120.00256 * 245.00310 * 17 14 12 36 36 H 1.08998 * 109.47208 * 184.99946 * 20 18 17 37 37 H 1.09000 * 109.47123 * 305.00096 * 20 18 17 38 38 H 0.96696 * 114.00203 * 179.97438 * 21 20 18 39 39 H 1.07995 * 126.34337 * 180.02562 * 25 24 23 40 40 H 1.08996 * 109.47841 * 270.16242 * 27 26 25 41 41 H 1.09001 * 109.46845 * 30.16516 * 27 26 25 42 42 H 1.09002 * 109.46639 * 150.15994 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8301 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 1.3446 -2.1616 -4.4124 10 1 2.4871 -0.1403 -5.1120 11 1 3.6307 -1.7566 -3.7120 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0932 1.4280 14 16 2.9705 0.1141 2.2862 15 8 3.7120 -0.8790 2.9814 16 8 3.5795 1.1829 1.5747 17 7 1.9609 0.8090 3.3997 18 6 1.1511 -0.0353 4.2817 19 1 0.9878 -1.0034 3.8084 20 6 1.8830 -0.2342 5.6105 21 8 1.9941 1.0204 6.2855 22 6 -0.1769 0.6308 4.5345 23 7 -0.3684 1.8884 4.8262 24 7 -1.6261 2.1116 4.9754 25 6 -2.2939 1.0062 4.7861 26 7 -1.3937 0.0360 4.4962 27 6 -1.6781 -1.3710 4.2035 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 0.7093 1.1618 -3.4844 32 1 2.4157 -2.7377 0.9716 33 1 1.6239 -2.2853 2.5002 34 1 0.6905 -2.3003 0.9847 35 1 1.9055 1.7750 3.4681 36 1 1.3236 -0.9331 6.2323 37 1 2.8791 -0.6339 5.4204 38 1 2.4483 0.9697 7.1377 39 1 -3.3657 0.8880 4.8452 40 1 -1.6711 -1.9438 5.1308 41 1 -2.6578 -1.4534 3.7330 42 1 -0.9169 -1.7627 3.5288 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414333057.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:34 Heat of formation + Delta-G solvation = -28.563462 kcal Electronic energy + Delta-G solvation = -28851.926699 eV Core-core repulsion = 24803.449446 eV Total energy + Delta-G solvation = -4048.477252 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.130 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.13784 -37.76256 -36.68894 -36.28988 -35.30833 -35.23604 -34.76572 -32.65288 -30.62492 -29.21211 -28.39347 -27.76902 -25.74007 -25.19326 -23.74515 -22.42804 -20.90039 -20.66612 -18.99545 -17.92257 -17.36296 -17.09512 -16.88131 -16.57510 -16.33967 -16.00155 -15.20462 -15.02171 -14.77577 -14.45255 -14.01005 -13.71618 -13.59750 -13.55668 -13.18076 -12.92094 -12.84928 -12.15632 -12.02382 -11.83289 -11.63577 -11.54971 -11.44389 -11.42943 -11.30872 -11.04037 -10.85428 -10.56528 -10.36253 -10.32494 -10.26652 -10.10946 -10.09236 -9.59616 -9.31934 -9.23019 -8.50297 -8.08894 -6.10861 -4.18282 1.04973 1.74013 2.33124 2.91550 3.25051 3.33059 3.35865 3.40477 3.85043 3.96739 4.14300 4.35095 4.36757 4.48545 4.60377 4.75158 4.80017 5.00584 5.08497 5.09343 5.20222 5.28825 5.40975 5.44721 5.68011 5.89274 5.95888 6.08437 6.21462 6.47746 6.67361 6.68055 6.72793 6.94549 7.11654 7.39161 7.56272 7.57131 7.72578 7.98339 8.21597 8.77038 8.83884 9.47873 10.94799 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015231 B = 0.004555 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.866321 B = 6145.628124 C = 7002.680672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.269 3.731 3 H 0.060 0.940 4 C -0.521 4.521 5 H 0.063 0.937 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.991 5.991 13 C 0.106 3.894 14 S 2.777 3.223 15 O -0.994 6.994 16 O -0.964 6.964 17 N -1.113 6.113 18 C 0.255 3.745 19 H 0.105 0.895 20 C 0.064 3.936 21 O -0.548 6.548 22 C 0.175 3.825 23 N -0.256 5.256 24 N -0.298 5.298 25 C 0.147 3.853 26 N -0.474 5.474 27 C 0.066 3.934 28 H 0.007 0.993 29 H 0.093 0.907 30 H 0.032 0.968 31 H 0.264 0.736 32 H 0.054 0.946 33 H 0.042 0.958 34 H 0.073 0.927 35 H 0.426 0.574 36 H 0.050 0.950 37 H 0.075 0.925 38 H 0.376 0.624 39 H 0.217 0.783 40 H 0.083 0.917 41 H 0.097 0.903 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.517 -7.861 16.538 19.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.166 3.834 3 H 0.078 0.922 4 C -0.561 4.561 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.727 3.273 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.835 5.835 13 C -0.040 4.040 14 S 2.785 3.215 15 O -0.977 6.977 16 O -0.948 6.948 17 N -0.872 5.872 18 C 0.144 3.856 19 H 0.123 0.877 20 C -0.017 4.017 21 O -0.352 6.352 22 C -0.094 4.094 23 N -0.096 5.096 24 N -0.138 5.138 25 C -0.140 4.140 26 N -0.166 5.166 27 C -0.077 4.077 28 H 0.026 0.974 29 H 0.112 0.888 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.091 0.909 35 H 0.262 0.738 36 H 0.068 0.932 37 H 0.093 0.907 38 H 0.222 0.778 39 H 0.234 0.766 40 H 0.102 0.898 41 H 0.115 0.885 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.656 -6.220 16.120 18.181 hybrid contribution -0.472 -1.793 -0.721 1.989 sum -6.128 -8.013 15.400 18.410 Atomic orbital electron populations 1.22099 0.98379 0.99348 1.00639 1.18749 0.91158 0.93129 0.80363 0.92200 1.21302 1.31781 1.13065 0.89947 0.91895 1.24919 0.94950 0.94969 0.99051 1.69859 1.36441 1.22546 1.23880 0.86484 0.79269 0.79250 0.82329 1.20698 1.21091 1.19804 1.57785 1.70081 1.19579 1.36019 1.21218 1.02144 0.82598 0.98068 1.02126 0.73678 0.73291 0.72370 1.93539 1.68902 1.60729 1.74518 1.93638 1.73943 1.55791 1.71428 1.56261 1.60772 1.18548 1.51586 1.18862 0.83171 0.92482 0.91119 0.87720 1.22674 1.00298 0.86715 0.92051 1.86675 1.81622 1.29670 1.37195 1.24582 0.87976 0.91858 1.04998 1.74261 1.08502 1.11366 1.15466 1.74322 0.98705 1.22154 1.18612 1.26418 0.98514 0.84907 1.04131 1.46177 1.06811 1.11476 1.52151 1.22203 1.04757 0.77692 1.03036 0.97384 0.88801 0.94942 0.92622 0.92721 0.93894 0.90873 0.73831 0.93151 0.90663 0.77814 0.76625 0.89800 0.88479 0.88866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 8.95 37.16 0.33 -2.86 16 2 C 0.27 6.41 2.62 -69.08 -0.18 6.23 16 3 H 0.06 1.63 6.91 -51.93 -0.36 1.27 16 4 C -0.52 -13.69 8.37 -34.44 -0.29 -13.98 16 5 H 0.06 1.63 7.65 -52.48 -0.40 1.23 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -24.60 11.32 55.43 0.63 -23.97 16 8 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 9 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 12 N -0.99 -19.38 3.12 -115.85 -0.36 -19.74 16 13 C 0.11 1.65 9.32 59.85 0.56 2.20 16 14 S 2.78 53.10 6.00 -107.50 -0.65 52.46 16 15 O -0.99 -18.94 16.42 -57.17 -0.94 -19.88 16 16 O -0.96 -22.71 16.70 -57.17 -0.95 -23.67 16 17 N -1.11 -17.78 5.47 -5.88 -0.03 -17.81 16 18 C 0.26 3.31 2.99 -69.08 -0.21 3.11 16 19 H 0.11 1.12 4.86 -51.93 -0.25 0.87 16 20 C 0.06 0.70 6.87 37.16 0.26 0.96 16 21 O -0.55 -6.57 12.77 -35.23 -0.45 -7.02 16 22 C 0.17 2.42 6.50 -154.99 -1.01 1.42 16 23 N -0.26 -4.32 11.57 32.80 0.38 -3.94 16 24 N -0.30 -4.71 12.21 29.69 0.36 -4.35 16 25 C 0.15 1.66 12.74 -89.95 -1.15 0.51 16 26 N -0.47 -5.05 3.15 -122.69 -0.39 -5.43 16 27 C 0.07 0.38 11.00 59.85 0.66 1.04 16 28 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 29 H 0.09 2.34 6.07 -51.93 -0.32 2.02 16 30 H 0.03 0.64 6.66 -51.93 -0.35 0.30 16 31 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.04 0.50 6.17 -51.93 -0.32 0.18 16 34 H 0.07 1.07 6.43 -51.93 -0.33 0.73 16 35 H 0.43 7.12 8.63 -34.47 -0.30 6.82 16 36 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.85 7.59 -51.93 -0.39 0.45 16 38 H 0.38 2.72 9.12 45.56 0.42 3.14 16 39 H 0.22 1.37 8.06 -52.49 -0.42 0.95 16 40 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.09 0.53 7.06 -51.93 -0.37 0.17 16 LS Contribution 358.49 15.07 5.40 5.40 Total: -1.00 -37.46 358.49 -7.78 -45.24 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -4.64 Total: 6.68 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -1.12 Total: 0.24 kcal Atomic # 7 Polarization: -75.83 SS G_CDS: 0.59 Total: -75.24 kcal Atomic # 8 Polarization: -48.23 SS G_CDS: -2.34 Total: -50.57 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: 53.10 SS G_CDS: -0.65 Total: 52.46 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -37.46 -7.78 -45.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414333057.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.677 kcal (2) G-P(sol) polarization free energy of solvation -37.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds