Wall clock time and date at job start Tue Mar 31 2020 18:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50699 * 109.46866 * 240.00048 * 2 1 3 5 5 H 1.08003 * 120.00271 * 240.00086 * 4 2 1 6 6 C 1.37879 * 120.00161 * 59.99586 * 4 2 1 7 7 N 1.31509 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46959 * 90.00076 * 8 6 4 10 10 H 1.48491 * 109.47193 * 210.00468 * 8 6 4 11 11 H 1.48498 * 109.46715 * 330.00553 * 8 6 4 12 12 N 1.46500 * 109.47249 * 120.00351 * 2 1 3 13 13 C 1.46499 * 120.00401 * 59.99673 * 12 2 1 14 14 S 1.65600 * 119.99854 * 239.99896 * 12 2 1 15 15 O 1.42101 * 106.40246 * 203.53898 * 14 12 2 16 16 O 1.42103 * 106.40034 * 336.45770 * 14 12 2 17 17 N 1.65601 * 107.21882 * 89.99628 * 14 12 2 18 18 C 1.46503 * 119.99776 * 65.00378 * 17 14 12 19 19 H 1.08993 * 109.46893 * 334.99580 * 18 17 14 20 20 C 1.52996 * 109.47477 * 94.99863 * 18 17 14 21 21 O 1.42904 * 109.47043 * 64.99510 * 20 18 17 22 22 C 1.50703 * 109.46757 * 214.99716 * 18 17 14 23 23 N 1.30512 * 126.34951 * 315.02334 * 22 18 17 24 24 N 1.28604 * 109.67556 * 179.97438 * 23 22 18 25 25 C 1.30522 * 109.66884 * 0.02562 * 24 23 22 26 26 N 1.35493 * 107.30667 * 359.76840 * 25 24 23 27 27 C 1.46503 * 126.97754 * 180.22072 * 26 25 24 28 28 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 29 29 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 30 30 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 31 31 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 32 32 H 1.08993 * 109.47066 * 89.99858 * 13 12 2 33 33 H 1.09004 * 109.47229 * 210.00249 * 13 12 2 34 34 H 1.09000 * 109.47083 * 330.00074 * 13 12 2 35 35 H 0.97000 * 120.00256 * 245.00310 * 17 14 12 36 36 H 1.08998 * 109.47208 * 184.99946 * 20 18 17 37 37 H 1.09000 * 109.47123 * 305.00096 * 20 18 17 38 38 H 0.96696 * 114.00203 * 179.97438 * 21 20 18 39 39 H 1.07995 * 126.34337 * 180.02562 * 25 24 23 40 40 H 1.08996 * 109.47841 * 270.16242 * 27 26 25 41 41 H 1.09001 * 109.46845 * 30.16516 * 27 26 25 42 42 H 1.09002 * 109.46639 * 150.15994 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8301 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 1.3446 -2.1616 -4.4124 10 1 2.4871 -0.1403 -5.1120 11 1 3.6307 -1.7566 -3.7120 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0932 1.4280 14 16 2.9705 0.1141 2.2862 15 8 3.7120 -0.8790 2.9814 16 8 3.5795 1.1829 1.5747 17 7 1.9609 0.8090 3.3997 18 6 1.1511 -0.0353 4.2817 19 1 0.9878 -1.0034 3.8084 20 6 1.8830 -0.2342 5.6105 21 8 1.9941 1.0204 6.2855 22 6 -0.1769 0.6308 4.5345 23 7 -0.3684 1.8884 4.8262 24 7 -1.6261 2.1116 4.9754 25 6 -2.2939 1.0062 4.7861 26 7 -1.3937 0.0360 4.4962 27 6 -1.6781 -1.3710 4.2035 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 0.7093 1.1618 -3.4844 32 1 2.4157 -2.7377 0.9716 33 1 1.6239 -2.2853 2.5002 34 1 0.6905 -2.3003 0.9847 35 1 1.9055 1.7750 3.4681 36 1 1.3236 -0.9331 6.2323 37 1 2.8791 -0.6339 5.4204 38 1 2.4483 0.9697 7.1377 39 1 -3.3657 0.8880 4.8452 40 1 -1.6711 -1.9438 5.1308 41 1 -2.6578 -1.4534 3.7330 42 1 -0.9169 -1.7627 3.5288 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414333057.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:33 Heat of formation + Delta-G solvation = -60.352853 kcal Electronic energy + Delta-G solvation = -28853.305190 eV Core-core repulsion = 24803.449446 eV Total energy + Delta-G solvation = -4049.855744 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.130 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.05065 -38.79959 -38.23721 -37.92390 -36.93536 -36.11560 -35.72246 -34.54861 -31.67753 -30.96816 -29.36050 -28.36783 -27.31940 -27.00285 -24.67025 -23.30533 -22.64371 -21.63314 -20.38525 -19.14868 -18.61694 -18.49521 -18.16458 -17.89113 -17.40971 -17.17712 -16.81699 -16.17608 -15.83291 -15.66213 -15.22771 -14.98988 -14.81971 -14.61956 -14.32451 -14.17423 -13.77743 -13.53944 -13.42902 -13.23669 -13.18686 -13.05074 -12.93862 -12.90275 -12.77937 -12.60393 -12.44632 -12.24446 -12.19421 -11.92092 -11.26199 -11.18478 -11.03053 -10.96206 -10.75833 -10.51471 -10.23825 -9.70997 -8.12223 -6.26578 -0.44712 0.86440 1.42116 1.45481 1.54268 1.57301 1.88591 2.08603 2.42214 2.52994 3.06374 3.16071 3.17410 3.35814 3.64502 3.80852 3.93773 4.02552 4.16361 4.25746 4.43796 4.47294 4.60418 4.62389 4.74183 4.79433 4.82820 4.91138 4.96398 5.03419 5.12445 5.19207 5.20762 5.59692 5.63554 5.82430 5.89879 5.99319 6.11990 6.27548 6.81940 6.95355 7.43131 7.82020 8.92025 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015231 B = 0.004555 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.866321 B = 6145.628124 C = 7002.680672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.274 3.726 3 H 0.016 0.984 4 C -0.535 4.535 5 H 0.062 0.938 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.957 3.043 9 H -0.267 1.267 10 H -0.288 1.288 11 H -0.273 1.273 12 N -0.995 5.995 13 C 0.094 3.906 14 S 2.795 3.205 15 O -0.992 6.992 16 O -1.017 7.017 17 N -1.108 6.108 18 C 0.244 3.756 19 H 0.130 0.870 20 C 0.064 3.936 21 O -0.572 6.572 22 C 0.167 3.833 23 N -0.304 5.304 24 N -0.353 5.353 25 C 0.164 3.836 26 N -0.468 5.468 27 C 0.052 3.948 28 H 0.021 0.979 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.264 0.736 32 H 0.048 0.952 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.422 0.578 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.393 0.607 39 H 0.262 0.738 40 H 0.112 0.888 41 H 0.120 0.880 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.917 -10.816 17.577 22.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.170 3.830 3 H 0.034 0.966 4 C -0.574 4.574 5 H 0.080 0.920 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.783 3.217 9 H -0.192 1.192 10 H -0.214 1.214 11 H -0.198 1.198 12 N -0.838 5.838 13 C -0.051 4.051 14 S 2.804 3.196 15 O -0.975 6.975 16 O -1.001 7.001 17 N -0.868 5.868 18 C 0.134 3.866 19 H 0.147 0.853 20 C -0.016 4.016 21 O -0.380 6.380 22 C -0.103 4.103 23 N -0.144 5.144 24 N -0.193 5.193 25 C -0.125 4.125 26 N -0.159 5.159 27 C -0.088 4.088 28 H 0.040 0.960 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.257 0.743 36 H 0.104 0.896 37 H 0.090 0.910 38 H 0.242 0.758 39 H 0.278 0.722 40 H 0.131 0.869 41 H 0.138 0.862 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.055 -9.235 17.189 20.749 hybrid contribution -0.081 -0.920 -0.937 1.316 sum -7.135 -10.154 16.252 20.449 Atomic orbital electron populations 1.21840 0.96797 1.00370 0.99717 1.18362 0.92173 0.91105 0.81354 0.96643 1.21633 1.31612 1.13052 0.91138 0.92007 1.25676 0.95221 0.95645 1.01842 1.69998 1.37478 1.23762 1.24337 0.85569 0.78900 0.78347 0.78887 1.19172 1.21414 1.19785 1.57608 1.69987 1.21253 1.34959 1.21554 1.02498 0.79958 1.01092 1.01382 0.73618 0.72426 0.72184 1.93530 1.69158 1.60557 1.74297 1.93564 1.75704 1.57760 1.73066 1.55945 1.61057 1.18481 1.51301 1.19320 0.82812 0.92638 0.91807 0.85260 1.22718 1.00384 0.86951 0.91592 1.86643 1.82116 1.30617 1.38590 1.24580 0.89173 0.91550 1.05037 1.74140 1.09505 1.13458 1.17269 1.74206 0.98891 1.24835 1.21321 1.27239 1.00098 0.83847 1.01275 1.46419 1.05419 1.13107 1.50963 1.22676 1.06126 0.75099 1.04941 0.96039 0.91889 0.92781 0.92724 0.93361 0.89589 0.89642 0.74327 0.89627 0.90976 0.75750 0.72247 0.86942 0.86195 0.88515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.54 8.95 71.98 0.64 -4.90 16 2 C 0.27 13.21 2.62 44.25 0.12 13.33 16 3 H 0.02 0.89 6.91 -2.39 -0.02 0.88 16 4 C -0.53 -28.15 8.37 25.60 0.21 -27.94 16 5 H 0.06 3.18 7.65 -2.91 -0.02 3.16 16 6 C 0.02 0.85 5.30 84.66 0.45 1.30 16 7 N -0.92 -51.60 11.32 21.45 0.24 -51.36 16 8 Si 0.96 42.56 29.54 68.60 2.03 44.58 16 9 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 10 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 11 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 12 N -1.00 -38.03 3.12 -520.44 -1.62 -39.66 16 13 C 0.09 2.65 9.32 127.77 1.19 3.84 16 14 S 2.80 106.59 6.00 -56.49 -0.34 106.25 16 15 O -0.99 -36.50 16.42 -128.00 -2.10 -38.60 16 16 O -1.02 -49.78 16.70 -128.00 -2.14 -51.92 16 17 N -1.11 -35.03 5.47 -172.52 -0.94 -35.97 16 18 C 0.24 5.84 2.99 44.24 0.13 5.97 16 19 H 0.13 2.30 4.86 -2.39 -0.01 2.29 16 20 C 0.06 1.26 6.87 71.98 0.49 1.76 16 21 O -0.57 -13.16 12.77 -148.98 -1.90 -15.06 16 22 C 0.17 4.36 6.50 137.98 0.90 5.26 16 23 N -0.30 -10.21 11.57 -50.16 -0.58 -10.79 16 24 N -0.35 -10.99 12.21 -59.99 -0.73 -11.72 16 25 C 0.16 3.27 12.74 180.11 2.30 5.57 16 26 N -0.47 -8.52 3.15 -542.07 -1.71 -10.23 16 27 C 0.05 0.36 11.00 127.77 1.41 1.77 16 28 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.06 3.16 6.07 -2.39 -0.01 3.15 16 30 H 0.05 2.05 6.66 -2.39 -0.02 2.04 16 31 H 0.26 14.16 8.31 -92.70 -0.77 13.39 16 32 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.09 1.66 6.17 -2.39 -0.01 1.64 16 34 H 0.08 2.20 6.43 -2.39 -0.02 2.19 16 35 H 0.42 14.53 8.63 -96.74 -0.84 13.70 16 36 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.07 1.46 7.59 -2.39 -0.02 1.44 16 38 H 0.39 5.25 9.12 -74.06 -0.68 4.58 16 39 H 0.26 2.29 8.06 -2.91 -0.02 2.26 16 40 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 41 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 42 H 0.10 0.65 7.06 -2.39 -0.02 0.63 16 Total: -1.00 -84.94 358.49 -2.39 -87.33 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: -0.43 Total: 21.19 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: 7.84 Total: 5.96 kcal Atomic # 7 Polarization: -154.38 SS G_CDS: -5.34 Total: -159.73 kcal Atomic # 8 Polarization: -99.44 SS G_CDS: -6.14 Total: -105.58 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.58 kcal Atomic # 16 Polarization: 106.59 SS G_CDS: -0.34 Total: 106.25 kcal Total: -84.94 -2.39 -87.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414333057.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.977 kcal (2) G-P(sol) polarization free energy of solvation -84.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds