Wall clock time and date at job start Tue Mar 31 2020 18:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47443 * 2 1 4 4 C 1.50700 * 109.47010 * 120.00565 * 2 1 3 5 5 H 1.08001 * 119.99788 * 120.00010 * 4 2 1 6 6 C 1.37879 * 119.99868 * 299.99335 * 4 2 1 7 7 N 1.31507 * 119.99946 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99692 * 180.02562 * 6 4 2 9 9 H 1.48491 * 109.47215 * 60.00226 * 8 6 4 10 10 H 1.48506 * 109.46863 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47262 * 299.99995 * 8 6 4 12 12 N 1.46505 * 109.46703 * 240.00376 * 2 1 3 13 13 C 1.46498 * 120.00235 * 295.95687 * 12 2 1 14 14 S 1.65603 * 119.99611 * 115.96531 * 12 2 1 15 15 O 1.42094 * 106.40388 * 336.95286 * 14 12 2 16 16 O 1.42109 * 106.39693 * 204.03917 * 14 12 2 17 17 N 1.65597 * 107.21990 * 90.49979 * 14 12 2 18 18 C 1.46491 * 120.00241 * 64.40515 * 17 14 12 19 19 H 1.09000 * 109.47171 * 22.01304 * 18 17 14 20 20 C 1.53002 * 109.47106 * 262.00850 * 18 17 14 21 21 O 1.42893 * 109.47126 * 295.27102 * 20 18 17 22 22 C 1.50699 * 109.47271 * 142.01043 * 18 17 14 23 23 N 1.30523 * 126.34815 * 45.02422 * 22 18 17 24 24 N 1.28594 * 109.67574 * 179.97438 * 23 22 18 25 25 C 1.30523 * 109.67162 * 0.02562 * 24 23 22 26 26 N 1.35494 * 107.30697 * 359.77072 * 25 24 23 27 27 C 1.46502 * 126.97805 * 180.22891 * 26 25 24 28 28 H 1.09001 * 109.46961 * 66.22651 * 1 2 3 29 29 H 1.08994 * 109.47102 * 186.22519 * 1 2 3 30 30 H 1.08996 * 109.46823 * 306.22489 * 1 2 3 31 31 H 0.96999 * 120.00274 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.46963 * 270.00663 * 13 12 2 33 33 H 1.09003 * 109.46671 * 30.00233 * 13 12 2 34 34 H 1.08996 * 109.46973 * 150.00173 * 13 12 2 35 35 H 0.97005 * 119.99644 * 244.67936 * 17 14 12 36 36 H 1.09001 * 109.46544 * 55.27454 * 20 18 17 37 37 H 1.09001 * 109.47146 * 175.27107 * 20 18 17 38 38 H 0.96700 * 113.99962 * 179.97438 * 21 20 18 39 39 H 1.07999 * 126.34236 * 179.97438 * 25 24 23 40 40 H 1.09002 * 109.46816 * 270.15336 * 27 26 25 41 41 H 1.08998 * 109.47045 * 30.15122 * 27 26 25 42 42 H 1.09001 * 109.46804 * 150.15419 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9430 0.8295 2.6034 8 14 2.3226 -1.1198 4.0078 9 1 3.8075 -1.1194 4.0076 10 1 1.8270 -0.4202 5.2204 11 1 1.8280 -2.5200 4.0080 12 7 2.0183 -0.6906 -1.1963 13 6 1.7388 -2.1163 -1.3844 14 16 2.8862 0.1405 -2.3357 15 8 2.5410 1.5104 -2.1827 16 8 2.7281 -0.5691 -3.5568 17 7 4.4850 0.0122 -1.9239 18 6 5.1412 -1.2975 -1.9338 19 1 4.5873 -1.9765 -2.5820 20 6 5.1737 -1.8623 -0.5122 21 8 5.9915 -1.0299 0.3125 22 6 6.5500 -1.1497 -2.4479 23 7 7.4070 -0.2279 -2.1022 24 7 8.5119 -0.4043 -2.7360 25 6 8.4098 -1.4464 -3.5153 26 7 7.1635 -1.9520 -3.3511 27 6 6.5942 -3.1262 -4.0170 28 1 -0.3633 0.4143 -0.9405 29 1 -0.3633 -1.0215 0.1114 30 1 -0.3633 0.6073 0.8290 31 1 0.7083 1.1607 3.4844 32 1 2.5407 -2.7055 -0.9394 33 1 0.7934 -2.3677 -0.9037 34 1 1.6745 -2.3364 -2.4500 35 1 4.9861 0.8039 -1.6723 36 1 4.1613 -1.8906 -0.1093 37 1 5.5854 -2.8714 -0.5315 38 1 6.0575 -1.3284 1.2299 39 1 9.1778 -1.8355 -4.1673 40 1 6.1122 -2.8193 -4.9452 41 1 7.3884 -3.8391 -4.2383 42 1 5.8582 -3.5936 -3.3627 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414333059.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:38 Heat of formation + Delta-G solvation = -29.774302 kcal Electronic energy + Delta-G solvation = -28945.045628 eV Core-core repulsion = 24896.515869 eV Total energy + Delta-G solvation = -4048.529758 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.130 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.13353 -37.53480 -36.74039 -36.19870 -35.35225 -35.18628 -34.56601 -32.64121 -30.58784 -29.18099 -28.24372 -27.75494 -25.58618 -25.25184 -23.55992 -22.41464 -20.87157 -20.61018 -18.98929 -17.82132 -17.29349 -16.90580 -16.70153 -16.63985 -16.33820 -15.81276 -15.38606 -15.01902 -14.66288 -14.30400 -13.94974 -13.68184 -13.51849 -13.37572 -13.21370 -12.86382 -12.74262 -12.02986 -11.87185 -11.75977 -11.68371 -11.54337 -11.42533 -11.40482 -11.24543 -11.05742 -10.90062 -10.56041 -10.31736 -10.30388 -10.26201 -10.15328 -9.68957 -9.53437 -9.22809 -9.16448 -8.52137 -8.06194 -6.11959 -4.20065 1.08911 1.74685 2.33638 2.92832 3.21878 3.26789 3.29655 3.38535 4.02689 4.06249 4.22595 4.31892 4.33626 4.48881 4.74602 4.78105 4.86342 5.03354 5.19497 5.23462 5.32521 5.37993 5.56424 5.66186 5.75720 6.00170 6.05863 6.10433 6.25374 6.55017 6.72942 6.81006 6.83087 7.05431 7.21960 7.46629 7.58621 7.75308 7.93264 7.99468 8.20966 8.78050 8.80035 9.45653 10.93860 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014042 B = 0.005019 C = 0.004228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.488945 B = 5577.050152 C = 6620.288543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.270 3.730 3 H 0.060 0.940 4 C -0.523 4.523 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.279 1.279 12 N -0.989 5.989 13 C 0.095 3.905 14 S 2.780 3.220 15 O -0.971 6.971 16 O -1.001 7.001 17 N -1.108 6.108 18 C 0.253 3.747 19 H 0.109 0.891 20 C 0.057 3.943 21 O -0.544 6.544 22 C 0.178 3.822 23 N -0.255 5.255 24 N -0.299 5.299 25 C 0.142 3.858 26 N -0.477 5.477 27 C 0.067 3.933 28 H 0.012 0.988 29 H 0.034 0.966 30 H 0.089 0.911 31 H 0.264 0.736 32 H 0.040 0.960 33 H 0.079 0.921 34 H 0.061 0.939 35 H 0.427 0.573 36 H 0.088 0.912 37 H 0.043 0.957 38 H 0.378 0.622 39 H 0.217 0.783 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.615 -12.083 -10.513 18.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.167 3.833 3 H 0.077 0.923 4 C -0.562 4.562 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.205 1.205 12 N -0.832 5.832 13 C -0.052 4.052 14 S 2.789 3.211 15 O -0.955 6.955 16 O -0.984 6.984 17 N -0.867 5.867 18 C 0.141 3.859 19 H 0.127 0.873 20 C -0.024 4.024 21 O -0.348 6.348 22 C -0.091 4.091 23 N -0.095 5.095 24 N -0.139 5.139 25 C -0.145 4.145 26 N -0.170 5.170 27 C -0.076 4.076 28 H 0.031 0.969 29 H 0.053 0.947 30 H 0.108 0.892 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.262 0.738 36 H 0.106 0.894 37 H 0.061 0.939 38 H 0.225 0.775 39 H 0.233 0.767 40 H 0.105 0.895 41 H 0.112 0.888 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.726 -10.100 -11.085 17.350 hybrid contribution 0.181 -2.014 1.166 2.334 sum 8.907 -12.113 -9.919 18.013 Atomic orbital electron populations 1.22060 0.98040 1.00410 0.99773 1.18746 0.91660 0.92839 0.80051 0.92281 1.21207 1.32068 1.12957 0.89991 0.92091 1.24900 0.94940 0.94920 0.98915 1.69869 1.35970 1.22437 1.23946 0.86616 0.79167 0.79468 0.82383 1.20207 1.21307 1.20485 1.57737 1.67724 1.18990 1.38732 1.21336 1.02333 0.81319 1.00164 1.01904 0.72417 0.73427 0.73361 1.93618 1.81849 1.33276 1.86790 1.93522 1.85876 1.75393 1.43652 1.56019 1.30434 1.13826 1.86378 1.18898 0.84930 0.86563 0.95512 0.87311 1.22805 0.97414 0.92054 0.90131 1.86592 1.70551 1.53434 1.24269 1.24741 0.98547 0.92012 0.93759 1.74311 0.96412 1.19815 1.18917 1.74329 1.17133 1.14599 1.07859 1.26410 0.87959 0.96178 1.03946 1.46226 1.12808 1.24624 1.33296 1.22186 1.00774 0.85723 0.98941 0.96904 0.94722 0.89199 0.92559 0.94114 0.90219 0.92034 0.73768 0.89387 0.93938 0.77535 0.76661 0.89472 0.88757 0.88984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 8.81 37.16 0.33 -2.93 16 2 C 0.27 6.23 2.59 -69.08 -0.18 6.06 16 3 H 0.06 1.56 6.97 -51.93 -0.36 1.20 16 4 C -0.52 -12.45 8.28 -34.44 -0.29 -12.74 16 5 H 0.06 1.36 5.84 -52.49 -0.31 1.05 16 6 C 0.07 1.67 5.30 -17.82 -0.09 1.58 16 7 N -0.88 -23.66 11.39 55.43 0.63 -23.03 16 8 Si 0.90 19.51 29.54 -169.99 -5.02 14.49 16 9 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 10 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 12 N -0.99 -18.81 2.87 -115.85 -0.33 -19.14 16 13 C 0.09 1.46 9.58 59.85 0.57 2.03 16 14 S 2.78 52.76 6.10 -107.50 -0.66 52.10 16 15 O -0.97 -22.17 16.73 -57.17 -0.96 -23.13 16 16 O -1.00 -18.96 16.12 -57.17 -0.92 -19.88 16 17 N -1.11 -18.75 5.44 -5.89 -0.03 -18.78 16 18 C 0.25 3.58 3.05 -69.09 -0.21 3.37 16 19 H 0.11 1.27 6.61 -51.93 -0.34 0.93 16 20 C 0.06 0.78 6.84 37.16 0.25 1.04 16 21 O -0.54 -8.60 12.78 -35.23 -0.45 -9.05 16 22 C 0.18 2.61 6.52 -154.98 -1.01 1.60 16 23 N -0.25 -4.46 11.61 32.80 0.38 -4.08 16 24 N -0.30 -4.77 12.21 29.69 0.36 -4.41 16 25 C 0.14 1.58 12.74 -89.94 -1.15 0.43 16 26 N -0.48 -5.16 3.15 -122.69 -0.39 -5.55 16 27 C 0.07 0.38 10.84 59.85 0.65 1.03 16 28 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.03 0.73 7.06 -51.93 -0.37 0.36 16 30 H 0.09 2.25 6.26 -51.93 -0.33 1.93 16 31 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 32 H 0.04 0.54 6.57 -51.93 -0.34 0.19 16 33 H 0.08 1.25 6.77 -51.93 -0.35 0.90 16 34 H 0.06 0.84 7.02 -51.93 -0.36 0.47 16 35 H 0.43 7.59 8.69 -34.47 -0.30 7.29 16 36 H 0.09 1.32 4.64 -51.93 -0.24 1.08 16 37 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.38 4.81 9.12 45.56 0.42 5.22 16 39 H 0.22 1.27 8.06 -52.49 -0.42 0.85 16 40 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 42 H 0.09 0.44 7.47 -51.93 -0.39 0.05 16 LS Contribution 355.77 15.07 5.36 5.36 Total: -1.00 -35.33 355.77 -7.66 -43.00 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -4.52 Total: 10.64 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -1.12 Total: 1.46 kcal Atomic # 7 Polarization: -75.61 SS G_CDS: 0.62 Total: -74.99 kcal Atomic # 8 Polarization: -49.74 SS G_CDS: -2.33 Total: -52.06 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.49 kcal Atomic # 16 Polarization: 52.76 SS G_CDS: -0.66 Total: 52.10 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -35.33 -7.66 -43.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414333059.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.223 kcal (2) G-P(sol) polarization free energy of solvation -35.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds