Wall clock time and date at job start Tue Mar 31 2020 18:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47443 * 2 1 4 4 C 1.50700 * 109.47010 * 120.00565 * 2 1 3 5 5 H 1.08001 * 119.99788 * 120.00010 * 4 2 1 6 6 C 1.37879 * 119.99868 * 299.99335 * 4 2 1 7 7 N 1.31507 * 119.99946 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99692 * 180.02562 * 6 4 2 9 9 H 1.48491 * 109.47215 * 60.00226 * 8 6 4 10 10 H 1.48506 * 109.46863 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47262 * 299.99995 * 8 6 4 12 12 N 1.46505 * 109.46703 * 240.00376 * 2 1 3 13 13 C 1.46498 * 120.00235 * 295.95687 * 12 2 1 14 14 S 1.65603 * 119.99611 * 115.96531 * 12 2 1 15 15 O 1.42094 * 106.40388 * 336.95286 * 14 12 2 16 16 O 1.42109 * 106.39693 * 204.03917 * 14 12 2 17 17 N 1.65597 * 107.21990 * 90.49979 * 14 12 2 18 18 C 1.46491 * 120.00241 * 64.40515 * 17 14 12 19 19 H 1.09000 * 109.47171 * 22.01304 * 18 17 14 20 20 C 1.53002 * 109.47106 * 262.00850 * 18 17 14 21 21 O 1.42893 * 109.47126 * 295.27102 * 20 18 17 22 22 C 1.50699 * 109.47271 * 142.01043 * 18 17 14 23 23 N 1.30523 * 126.34815 * 45.02422 * 22 18 17 24 24 N 1.28594 * 109.67574 * 179.97438 * 23 22 18 25 25 C 1.30523 * 109.67162 * 0.02562 * 24 23 22 26 26 N 1.35494 * 107.30697 * 359.77072 * 25 24 23 27 27 C 1.46502 * 126.97805 * 180.22891 * 26 25 24 28 28 H 1.09001 * 109.46961 * 66.22651 * 1 2 3 29 29 H 1.08994 * 109.47102 * 186.22519 * 1 2 3 30 30 H 1.08996 * 109.46823 * 306.22489 * 1 2 3 31 31 H 0.96999 * 120.00274 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.46963 * 270.00663 * 13 12 2 33 33 H 1.09003 * 109.46671 * 30.00233 * 13 12 2 34 34 H 1.08996 * 109.46973 * 150.00173 * 13 12 2 35 35 H 0.97005 * 119.99644 * 244.67936 * 17 14 12 36 36 H 1.09001 * 109.46544 * 55.27454 * 20 18 17 37 37 H 1.09001 * 109.47146 * 175.27107 * 20 18 17 38 38 H 0.96700 * 113.99962 * 179.97438 * 21 20 18 39 39 H 1.07999 * 126.34236 * 179.97438 * 25 24 23 40 40 H 1.09002 * 109.46816 * 270.15336 * 27 26 25 41 41 H 1.08998 * 109.47045 * 30.15122 * 27 26 25 42 42 H 1.09001 * 109.46804 * 150.15419 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9430 0.8295 2.6034 8 14 2.3226 -1.1198 4.0078 9 1 3.8075 -1.1194 4.0076 10 1 1.8270 -0.4202 5.2204 11 1 1.8280 -2.5200 4.0080 12 7 2.0183 -0.6906 -1.1963 13 6 1.7388 -2.1163 -1.3844 14 16 2.8862 0.1405 -2.3357 15 8 2.5410 1.5104 -2.1827 16 8 2.7281 -0.5691 -3.5568 17 7 4.4850 0.0122 -1.9239 18 6 5.1412 -1.2975 -1.9338 19 1 4.5873 -1.9765 -2.5820 20 6 5.1737 -1.8623 -0.5122 21 8 5.9915 -1.0299 0.3125 22 6 6.5500 -1.1497 -2.4479 23 7 7.4070 -0.2279 -2.1022 24 7 8.5119 -0.4043 -2.7360 25 6 8.4098 -1.4464 -3.5153 26 7 7.1635 -1.9520 -3.3511 27 6 6.5942 -3.1262 -4.0170 28 1 -0.3633 0.4143 -0.9405 29 1 -0.3633 -1.0215 0.1114 30 1 -0.3633 0.6073 0.8290 31 1 0.7083 1.1607 3.4844 32 1 2.5407 -2.7055 -0.9394 33 1 0.7934 -2.3677 -0.9037 34 1 1.6745 -2.3364 -2.4500 35 1 4.9861 0.8039 -1.6723 36 1 4.1613 -1.8906 -0.1093 37 1 5.5854 -2.8714 -0.5315 38 1 6.0575 -1.3284 1.2299 39 1 9.1778 -1.8355 -4.1673 40 1 6.1122 -2.8193 -4.9452 41 1 7.3884 -3.8391 -4.2383 42 1 5.8582 -3.5936 -3.3627 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414333059.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:37 Heat of formation + Delta-G solvation = -59.364743 kcal Electronic energy + Delta-G solvation = -28946.328766 eV Core-core repulsion = 24896.515869 eV Total energy + Delta-G solvation = -4049.812896 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.130 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.07125 -38.73657 -38.30406 -37.79728 -36.96353 -36.07471 -35.68682 -34.44093 -31.67407 -30.91378 -29.32578 -28.37702 -27.19084 -26.94755 -24.61499 -23.30056 -22.60904 -21.63500 -20.39530 -19.07763 -18.65048 -18.30096 -18.04107 -17.95412 -17.42599 -17.04900 -16.86398 -16.23353 -15.82404 -15.55540 -15.20466 -15.03243 -14.67005 -14.46075 -14.35236 -14.11711 -13.63692 -13.53382 -13.45061 -13.24327 -13.15688 -13.00989 -12.89984 -12.85513 -12.69550 -12.60793 -12.43850 -12.23351 -12.11302 -11.86034 -11.27205 -11.11469 -11.05484 -10.83777 -10.65557 -10.43251 -10.23684 -9.64031 -8.02108 -6.15226 -0.40140 0.84603 1.50964 1.52125 1.56886 1.58488 1.87667 2.03346 2.50688 2.56422 3.05851 3.24242 3.28546 3.39023 3.69675 3.89511 3.92414 4.04613 4.22963 4.32095 4.41679 4.46536 4.61904 4.72849 4.79989 4.83016 4.91067 4.97489 5.00258 5.12409 5.17313 5.22515 5.26349 5.65462 5.72537 5.88056 5.96019 5.98190 6.14889 6.34393 6.92843 6.94932 7.53848 7.80605 9.03251 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014042 B = 0.005019 C = 0.004228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.488945 B = 5577.050152 C = 6620.288543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.275 3.725 3 H 0.017 0.983 4 C -0.516 4.516 5 H 0.080 0.920 6 C 0.014 3.986 7 N -0.922 5.922 8 Si 0.956 3.044 9 H -0.268 1.268 10 H -0.300 1.300 11 H -0.266 1.266 12 N -0.990 5.990 13 C 0.085 3.915 14 S 2.798 3.202 15 O -1.017 7.017 16 O -0.999 6.999 17 N -1.108 6.108 18 C 0.246 3.754 19 H 0.137 0.863 20 C 0.057 3.943 21 O -0.569 6.569 22 C 0.166 3.834 23 N -0.304 5.304 24 N -0.355 5.355 25 C 0.164 3.836 26 N -0.471 5.471 27 C 0.053 3.947 28 H 0.018 0.982 29 H 0.048 0.952 30 H 0.063 0.937 31 H 0.259 0.741 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.421 0.579 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.388 0.612 39 H 0.266 0.734 40 H 0.095 0.905 41 H 0.130 0.870 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.834 -15.763 -11.713 21.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.171 3.829 3 H 0.035 0.965 4 C -0.555 4.555 5 H 0.098 0.902 6 C -0.185 4.185 7 N -0.562 5.562 8 Si 0.782 3.218 9 H -0.193 1.193 10 H -0.226 1.226 11 H -0.191 1.191 12 N -0.833 5.833 13 C -0.060 4.060 14 S 2.807 3.193 15 O -1.001 7.001 16 O -0.982 6.982 17 N -0.867 5.867 18 C 0.136 3.864 19 H 0.154 0.846 20 C -0.024 4.024 21 O -0.375 6.375 22 C -0.105 4.105 23 N -0.144 5.144 24 N -0.194 5.194 25 C -0.124 4.124 26 N -0.162 5.162 27 C -0.088 4.088 28 H 0.037 0.963 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.255 0.745 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.236 0.764 39 H 0.282 0.718 40 H 0.113 0.887 41 H 0.148 0.852 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 9.943 -13.846 -12.315 21.029 hybrid contribution -0.136 -0.946 1.401 1.696 sum 9.808 -14.792 -10.913 20.835 Atomic orbital electron populations 1.21937 0.98006 1.00706 0.98969 1.18380 0.91653 0.91265 0.81588 0.96477 1.21545 1.31141 1.12926 0.89936 0.90198 1.25687 0.95353 0.95577 1.01914 1.70039 1.37802 1.24252 1.24059 0.85646 0.78944 0.78670 0.78508 1.19259 1.22646 1.19138 1.57533 1.68030 1.20524 1.37179 1.21650 1.03297 0.79189 1.01906 1.01217 0.72624 0.72253 0.73239 1.93555 1.82968 1.36250 1.87360 1.93512 1.86189 1.75043 1.43447 1.55826 1.29524 1.15084 1.86242 1.19239 0.85188 0.85385 0.96624 0.84564 1.22876 0.96683 0.93457 0.89344 1.86583 1.70992 1.54676 1.25298 1.24639 0.98342 0.92616 0.94855 1.74190 0.97580 1.21884 1.20751 1.74211 1.17501 1.17542 1.10160 1.27308 0.88649 0.94237 1.02182 1.46469 1.12371 1.25120 1.32196 1.22672 1.02499 0.84577 0.99042 0.96328 0.93307 0.91847 0.93139 0.91399 0.90446 0.89931 0.74465 0.90617 0.90334 0.76426 0.71818 0.88695 0.85162 0.87720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.28 8.81 71.98 0.63 -5.65 16 2 C 0.28 12.85 2.59 44.24 0.11 12.96 16 3 H 0.02 0.96 6.97 -2.39 -0.02 0.94 16 4 C -0.52 -24.27 8.28 25.60 0.21 -24.05 16 5 H 0.08 3.38 5.84 -2.91 -0.02 3.36 16 6 C 0.01 0.70 5.30 84.66 0.45 1.15 16 7 N -0.92 -50.65 11.39 21.45 0.24 -50.40 16 8 Si 0.96 39.63 29.54 68.60 2.03 41.66 16 9 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 10 H -0.30 -12.97 7.11 99.48 0.71 -12.27 16 11 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 12 N -0.99 -36.70 2.87 -520.44 -1.49 -38.19 16 13 C 0.08 2.35 9.58 127.77 1.22 3.58 16 14 S 2.80 105.26 6.10 -56.49 -0.34 104.91 16 15 O -1.02 -47.99 16.73 -128.00 -2.14 -50.13 16 16 O -1.00 -36.06 16.12 -128.00 -2.06 -38.12 16 17 N -1.11 -37.11 5.44 -172.54 -0.94 -38.05 16 18 C 0.25 6.47 3.05 44.25 0.13 6.61 16 19 H 0.14 2.70 6.61 -2.39 -0.02 2.69 16 20 C 0.06 1.42 6.84 71.98 0.49 1.92 16 21 O -0.57 -17.50 12.78 -148.98 -1.90 -19.40 16 22 C 0.17 4.57 6.52 137.98 0.90 5.47 16 23 N -0.30 -10.60 11.61 -50.15 -0.58 -11.18 16 24 N -0.35 -11.03 12.21 -59.99 -0.73 -11.77 16 25 C 0.16 3.17 12.74 180.11 2.30 5.47 16 26 N -0.47 -8.64 3.15 -542.06 -1.71 -10.34 16 27 C 0.05 0.36 10.84 127.77 1.38 1.74 16 28 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.05 2.05 7.06 -2.39 -0.02 2.03 16 30 H 0.06 3.27 6.26 -2.39 -0.01 3.26 16 31 H 0.26 13.84 8.31 -92.71 -0.77 13.06 16 32 H 0.07 1.52 6.57 -2.39 -0.02 1.51 16 33 H 0.08 2.21 6.77 -2.39 -0.02 2.20 16 34 H 0.08 1.96 7.02 -2.39 -0.02 1.94 16 35 H 0.42 15.45 8.69 -96.74 -0.84 14.61 16 36 H 0.08 2.07 4.64 -2.39 -0.01 2.06 16 37 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.39 9.47 9.12 -74.06 -0.68 8.80 16 39 H 0.27 1.90 8.06 -2.91 -0.02 1.87 16 40 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.13 -0.03 8.14 -2.39 -0.02 -0.05 16 42 H 0.10 0.47 7.47 -2.39 -0.02 0.45 16 Total: -1.00 -80.08 355.77 -2.22 -82.30 By element: Atomic # 1 Polarization: 29.94 SS G_CDS: -0.43 Total: 29.52 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: 7.84 Total: 9.19 kcal Atomic # 7 Polarization: -154.72 SS G_CDS: -5.21 Total: -159.93 kcal Atomic # 8 Polarization: -101.54 SS G_CDS: -6.11 Total: -107.65 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 2.03 Total: 41.66 kcal Atomic # 16 Polarization: 105.26 SS G_CDS: -0.34 Total: 104.91 kcal Total: -80.08 -2.22 -82.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414333059.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.938 kcal (2) G-P(sol) polarization free energy of solvation -80.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds