Wall clock time and date at job start Tue Mar 31 2020 18:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47363 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47233 * 120.00158 * 8 6 4 11 11 H 1.48508 * 109.46883 * 239.99963 * 8 6 4 12 12 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 13 13 C 1.46505 * 120.00341 * 300.00268 * 12 2 1 14 14 S 1.65599 * 119.99944 * 120.00026 * 12 2 1 15 15 O 1.42101 * 106.40626 * 203.54417 * 14 12 2 16 16 O 1.42101 * 106.40278 * 336.46186 * 14 12 2 17 17 N 1.65598 * 107.22076 * 90.00262 * 14 12 2 18 18 C 1.46504 * 119.99893 * 64.99979 * 17 14 12 19 19 H 1.09004 * 109.47178 * 335.00157 * 18 17 14 20 20 C 1.52997 * 109.47173 * 95.00415 * 18 17 14 21 21 O 1.42896 * 109.47196 * 64.99970 * 20 18 17 22 22 C 1.50704 * 109.47053 * 215.00489 * 18 17 14 23 23 N 1.30523 * 126.34467 * 315.01910 * 22 18 17 24 24 N 1.28591 * 109.67173 * 179.97438 * 23 22 18 25 25 C 1.30523 * 109.67265 * 0.02562 * 24 23 22 26 26 N 1.35488 * 126.34663 * 134.71439 * 22 18 17 27 27 C 1.46501 * 126.98098 * 0.03264 * 26 22 18 28 28 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 29 29 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 30 30 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 31 31 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 32 32 H 1.09005 * 109.46851 * 89.99998 * 13 12 2 33 33 H 1.08997 * 109.47129 * 209.99273 * 13 12 2 34 34 H 1.08993 * 109.46804 * 329.99912 * 13 12 2 35 35 H 0.97000 * 120.00326 * 245.00321 * 17 14 12 36 36 H 1.09003 * 109.47262 * 185.00442 * 20 18 17 37 37 H 1.09004 * 109.47040 * 304.99619 * 20 18 17 38 38 H 0.96699 * 113.99782 * 180.02562 * 21 20 18 39 39 H 1.08005 * 126.34280 * 179.97438 * 25 24 23 40 40 H 1.09004 * 109.47224 * 89.99800 * 27 26 22 41 41 H 1.09002 * 109.47322 * 209.99920 * 27 26 22 42 42 H 1.08995 * 109.47112 * 330.00202 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.1474 -2.2863 3.6038 10 1 3.1473 -0.1857 4.8160 11 1 1.1678 -1.5865 4.8165 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4279 14 16 2.9704 0.1141 -2.2862 15 8 2.8227 -0.5646 -3.5259 16 8 2.6904 1.4972 -2.1193 17 7 4.5437 -0.1043 -1.8180 18 6 5.1357 -1.4442 -1.8415 19 1 4.3473 -2.1914 -1.7510 20 6 5.8830 -1.6486 -3.1608 21 8 6.9886 -0.7456 -3.2269 22 6 6.0987 -1.5882 -0.6912 23 7 6.9936 -0.7146 -0.3177 24 7 7.6398 -1.1646 0.6990 25 6 7.1867 -2.3458 1.0199 26 7 6.1919 -2.6459 0.1504 27 6 5.3839 -3.8676 0.1232 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 0.7082 1.1609 3.4844 32 1 0.7375 -2.1444 -1.9993 33 1 2.4628 -2.5819 -1.9863 34 1 1.5295 -2.5969 -0.4708 35 1 5.0734 0.6549 -1.5282 36 1 6.2477 -2.6742 -3.2168 37 1 5.2073 -1.4573 -3.9945 38 1 7.5086 -0.8194 -4.0388 39 1 7.5370 -2.9670 1.8311 40 1 5.8684 -4.6097 -0.5113 41 1 5.2873 -4.2619 1.1348 42 1 4.3947 -3.6402 -0.2741 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414333061.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:42 Heat of formation + Delta-G solvation = -30.734612 kcal Electronic energy + Delta-G solvation = -29179.037615 eV Core-core repulsion = 25130.466215 eV Total energy + Delta-G solvation = -4048.571400 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.130 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.97313 -37.68508 -36.69989 -36.27206 -35.33923 -35.10007 -34.65618 -32.69655 -30.48813 -29.19897 -28.29364 -27.61918 -25.64718 -25.26639 -23.63232 -22.27493 -20.89664 -20.53704 -19.03025 -17.83941 -17.25205 -17.08006 -16.73763 -16.50018 -16.28101 -16.01542 -15.22240 -14.89027 -14.70765 -14.46335 -13.93987 -13.66173 -13.45217 -13.44330 -13.22206 -12.83052 -12.74360 -12.10581 -11.97802 -11.87091 -11.64503 -11.55298 -11.46488 -11.32498 -11.28789 -11.06552 -10.95717 -10.51170 -10.30177 -10.20545 -10.17490 -10.10211 -10.03752 -9.57940 -9.29690 -9.06533 -8.55447 -8.08955 -6.16606 -4.25352 1.09710 1.89918 2.49573 3.06171 3.16677 3.21696 3.26249 3.41630 3.93127 4.04364 4.22736 4.27350 4.50760 4.62292 4.73600 4.80318 4.89790 5.08919 5.14297 5.15283 5.23074 5.38089 5.48869 5.50540 5.82443 5.96474 6.03261 6.19099 6.24977 6.50329 6.78662 6.80774 6.88958 7.03948 7.19978 7.43791 7.53173 7.63386 7.71065 7.97083 8.17224 8.75383 8.92689 9.40807 10.88673 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010156 B = 0.006956 C = 0.004836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2756.362225 B = 4024.324525 C = 5788.638924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.268 3.732 3 H 0.060 0.940 4 C -0.524 4.524 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.992 5.992 13 C 0.103 3.897 14 S 2.780 3.220 15 O -0.996 6.996 16 O -0.972 6.972 17 N -1.108 6.108 18 C 0.258 3.742 19 H 0.105 0.895 20 C 0.064 3.936 21 O -0.547 6.547 22 C 0.178 3.822 23 N -0.257 5.257 24 N -0.299 5.299 25 C 0.147 3.853 26 N -0.472 5.472 27 C 0.067 3.933 28 H 0.013 0.987 29 H 0.093 0.907 30 H 0.032 0.968 31 H 0.264 0.736 32 H 0.048 0.952 33 H 0.044 0.956 34 H 0.081 0.919 35 H 0.427 0.573 36 H 0.050 0.950 37 H 0.074 0.926 38 H 0.375 0.625 39 H 0.216 0.784 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.608 -12.802 -7.858 16.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.165 3.835 3 H 0.078 0.922 4 C -0.563 4.563 5 H 0.076 0.924 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.835 5.835 13 C -0.043 4.043 14 S 2.789 3.211 15 O -0.980 6.980 16 O -0.956 6.956 17 N -0.866 5.866 18 C 0.146 3.854 19 H 0.122 0.878 20 C -0.017 4.017 21 O -0.351 6.351 22 C -0.091 4.091 23 N -0.097 5.097 24 N -0.138 5.138 25 C -0.140 4.140 26 N -0.163 5.163 27 C -0.076 4.076 28 H 0.032 0.968 29 H 0.111 0.889 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.099 0.901 35 H 0.263 0.737 36 H 0.068 0.932 37 H 0.092 0.908 38 H 0.221 0.779 39 H 0.232 0.768 40 H 0.101 0.899 41 H 0.114 0.886 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.696 -10.894 -7.905 15.505 hybrid contribution 0.028 -1.971 1.117 2.266 sum 7.724 -12.865 -6.788 16.470 Atomic orbital electron populations 1.22046 0.97795 0.99626 1.00871 1.18753 0.91935 0.92860 0.79937 0.92231 1.21281 1.31870 1.13021 0.90172 0.92366 1.24904 0.94911 0.94966 0.98941 1.69874 1.36005 1.22433 1.23787 0.86497 0.78499 0.79427 0.83155 1.20238 1.20893 1.20928 1.57799 1.64411 1.21252 1.40015 1.21263 0.99041 0.82252 1.01791 1.01965 0.72316 0.73441 0.73410 1.93541 1.86011 1.76405 1.41998 1.93617 1.83188 1.32091 1.86687 1.56061 1.32040 1.13622 1.84901 1.18827 0.91719 0.86356 0.88498 0.87759 1.22685 0.89636 0.92768 0.96635 1.86690 1.42877 1.61103 1.44403 1.24498 1.01249 0.86482 0.96863 1.74226 1.05237 1.23058 1.07163 1.74288 1.22799 1.07412 1.09338 1.26368 0.91627 0.97674 0.98336 1.46115 1.28733 1.17082 1.24415 1.22183 0.96022 0.84121 1.05254 0.96793 0.88884 0.94887 0.92580 0.93345 0.93777 0.90080 0.73746 0.93180 0.90806 0.77935 0.76795 0.89948 0.88608 0.88798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 8.97 37.16 0.33 -2.98 16 2 C 0.27 6.35 2.62 -69.08 -0.18 6.17 16 3 H 0.06 1.61 6.91 -51.93 -0.36 1.25 16 4 C -0.52 -12.96 7.99 -34.44 -0.28 -13.24 16 5 H 0.06 1.37 7.33 -52.49 -0.38 0.99 16 6 C 0.07 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.88 -24.12 11.32 55.43 0.63 -23.49 16 8 Si 0.90 20.17 29.54 -169.99 -5.02 15.15 16 9 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 N -0.99 -19.31 3.12 -115.85 -0.36 -19.67 16 13 C 0.10 1.59 9.08 59.85 0.54 2.14 16 14 S 2.78 53.10 6.00 -107.50 -0.65 52.45 16 15 O -1.00 -18.66 16.42 -57.17 -0.94 -19.60 16 16 O -0.97 -22.35 16.70 -57.17 -0.95 -23.31 16 17 N -1.11 -18.85 5.47 -5.88 -0.03 -18.88 16 18 C 0.26 3.66 2.99 -69.08 -0.21 3.46 16 19 H 0.10 1.26 4.86 -51.93 -0.25 1.00 16 20 C 0.06 0.75 6.87 37.16 0.26 1.01 16 21 O -0.55 -6.97 12.77 -35.23 -0.45 -7.42 16 22 C 0.18 2.79 6.50 -154.99 -1.01 1.78 16 23 N -0.26 -4.78 11.57 32.80 0.38 -4.40 16 24 N -0.30 -5.29 12.21 29.69 0.36 -4.93 16 25 C 0.15 1.98 12.74 -89.95 -1.15 0.84 16 26 N -0.47 -6.07 3.15 -122.68 -0.39 -6.45 16 27 C 0.07 0.54 11.00 59.85 0.66 1.20 16 28 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 30 H 0.03 0.69 7.67 -51.93 -0.40 0.30 16 31 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.04 0.54 6.16 -51.93 -0.32 0.22 16 34 H 0.08 1.25 7.02 -51.93 -0.36 0.89 16 35 H 0.43 7.65 8.63 -34.47 -0.30 7.36 16 36 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.86 7.59 -51.93 -0.39 0.47 16 38 H 0.37 2.93 9.12 45.56 0.42 3.35 16 39 H 0.22 1.86 8.06 -52.48 -0.42 1.44 16 40 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.09 0.75 7.06 -51.93 -0.37 0.39 16 LS Contribution 359.17 15.07 5.41 5.41 Total: -1.00 -36.33 359.17 -7.84 -44.17 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -4.71 Total: 8.98 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: -1.12 Total: 1.99 kcal Atomic # 7 Polarization: -78.41 SS G_CDS: 0.59 Total: -77.82 kcal Atomic # 8 Polarization: -47.98 SS G_CDS: -2.34 Total: -50.33 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Atomic # 16 Polarization: 53.10 SS G_CDS: -0.65 Total: 52.45 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -36.33 -7.84 -44.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414333061.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.435 kcal (2) G-P(sol) polarization free energy of solvation -36.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds