Wall clock time and date at job start Tue Mar 31 2020 18:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47363 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47233 * 120.00158 * 8 6 4 11 11 H 1.48508 * 109.46883 * 239.99963 * 8 6 4 12 12 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 13 13 C 1.46505 * 120.00341 * 300.00268 * 12 2 1 14 14 S 1.65599 * 119.99944 * 120.00026 * 12 2 1 15 15 O 1.42101 * 106.40626 * 203.54417 * 14 12 2 16 16 O 1.42101 * 106.40278 * 336.46186 * 14 12 2 17 17 N 1.65598 * 107.22076 * 90.00262 * 14 12 2 18 18 C 1.46504 * 119.99893 * 64.99979 * 17 14 12 19 19 H 1.09004 * 109.47178 * 335.00157 * 18 17 14 20 20 C 1.52997 * 109.47173 * 95.00415 * 18 17 14 21 21 O 1.42896 * 109.47196 * 64.99970 * 20 18 17 22 22 C 1.50704 * 109.47053 * 215.00489 * 18 17 14 23 23 N 1.30523 * 126.34467 * 315.01910 * 22 18 17 24 24 N 1.28591 * 109.67173 * 179.97438 * 23 22 18 25 25 C 1.30523 * 109.67265 * 0.02562 * 24 23 22 26 26 N 1.35488 * 126.34663 * 134.71439 * 22 18 17 27 27 C 1.46501 * 126.98098 * 0.03264 * 26 22 18 28 28 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 29 29 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 30 30 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 31 31 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 32 32 H 1.09005 * 109.46851 * 89.99998 * 13 12 2 33 33 H 1.08997 * 109.47129 * 209.99273 * 13 12 2 34 34 H 1.08993 * 109.46804 * 329.99912 * 13 12 2 35 35 H 0.97000 * 120.00326 * 245.00321 * 17 14 12 36 36 H 1.09003 * 109.47262 * 185.00442 * 20 18 17 37 37 H 1.09004 * 109.47040 * 304.99619 * 20 18 17 38 38 H 0.96699 * 113.99782 * 180.02562 * 21 20 18 39 39 H 1.08005 * 126.34280 * 179.97438 * 25 24 23 40 40 H 1.09004 * 109.47224 * 89.99800 * 27 26 22 41 41 H 1.09002 * 109.47322 * 209.99920 * 27 26 22 42 42 H 1.08995 * 109.47112 * 330.00202 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.1474 -2.2863 3.6038 10 1 3.1473 -0.1857 4.8160 11 1 1.1678 -1.5865 4.8165 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4279 14 16 2.9704 0.1141 -2.2862 15 8 2.8227 -0.5646 -3.5259 16 8 2.6904 1.4972 -2.1193 17 7 4.5437 -0.1043 -1.8180 18 6 5.1357 -1.4442 -1.8415 19 1 4.3473 -2.1914 -1.7510 20 6 5.8830 -1.6486 -3.1608 21 8 6.9886 -0.7456 -3.2269 22 6 6.0987 -1.5882 -0.6912 23 7 6.9936 -0.7146 -0.3177 24 7 7.6398 -1.1646 0.6990 25 6 7.1867 -2.3458 1.0199 26 7 6.1919 -2.6459 0.1504 27 6 5.3839 -3.8676 0.1232 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 0.7082 1.1609 3.4844 32 1 0.7375 -2.1444 -1.9993 33 1 2.4628 -2.5819 -1.9863 34 1 1.5295 -2.5969 -0.4708 35 1 5.0734 0.6549 -1.5282 36 1 6.2477 -2.6742 -3.2168 37 1 5.2073 -1.4573 -3.9945 38 1 7.5086 -0.8194 -4.0388 39 1 7.5370 -2.9670 1.8311 40 1 5.8684 -4.6097 -0.5113 41 1 5.2873 -4.2619 1.1348 42 1 4.3947 -3.6402 -0.2741 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414333061.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:41 Heat of formation + Delta-G solvation = -61.219166 kcal Electronic energy + Delta-G solvation = -29180.359525 eV Core-core repulsion = 25130.466215 eV Total energy + Delta-G solvation = -4049.893310 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.130 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.03345 -38.78538 -38.22555 -37.90613 -36.94382 -36.10158 -35.70536 -34.53481 -31.65572 -30.96020 -29.34700 -28.37476 -27.26436 -27.00732 -24.65029 -23.29871 -22.65743 -21.61869 -20.44246 -19.08610 -18.60889 -18.36084 -18.14909 -17.98762 -17.40466 -17.19491 -16.81081 -16.17826 -15.83074 -15.63889 -15.24013 -14.89490 -14.86815 -14.55229 -14.32777 -14.17326 -13.73843 -13.55571 -13.46186 -13.26338 -13.18314 -13.01706 -12.96382 -12.90682 -12.75441 -12.68740 -12.42848 -12.20780 -12.14862 -11.93131 -11.27203 -11.21941 -11.02208 -10.94080 -10.70553 -10.53019 -10.21708 -9.69243 -8.11430 -6.25690 -0.40233 0.87737 1.39168 1.42138 1.50389 1.58846 1.88241 2.08034 2.41570 2.52214 3.07829 3.18282 3.19146 3.36517 3.67244 3.81255 3.92042 4.04480 4.18235 4.27140 4.43162 4.47140 4.60706 4.67623 4.71761 4.81111 4.81511 4.95704 4.98725 5.07496 5.14132 5.21238 5.27996 5.59467 5.62438 5.82032 5.92326 5.99754 6.09920 6.26320 6.82891 6.97142 7.43669 7.82776 8.93601 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010156 B = 0.006956 C = 0.004836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2756.362225 B = 4024.324525 C = 5788.638924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.273 3.727 3 H 0.016 0.984 4 C -0.519 4.519 5 H 0.073 0.927 6 C 0.013 3.987 7 N -0.920 5.920 8 Si 0.954 3.046 9 H -0.253 1.253 10 H -0.298 1.298 11 H -0.280 1.280 12 N -0.995 5.995 13 C 0.090 3.910 14 S 2.797 3.203 15 O -0.990 6.990 16 O -1.018 7.018 17 N -1.107 6.107 18 C 0.246 3.754 19 H 0.128 0.872 20 C 0.066 3.934 21 O -0.572 6.572 22 C 0.171 3.829 23 N -0.304 5.304 24 N -0.352 5.352 25 C 0.159 3.841 26 N -0.469 5.469 27 C 0.054 3.946 28 H 0.018 0.982 29 H 0.066 0.934 30 H 0.050 0.950 31 H 0.261 0.739 32 H 0.057 0.943 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.421 0.579 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.393 0.607 39 H 0.259 0.741 40 H 0.116 0.884 41 H 0.113 0.887 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.187 -16.602 -8.167 20.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.169 3.831 3 H 0.034 0.966 4 C -0.559 4.559 5 H 0.091 0.909 6 C -0.187 4.187 7 N -0.559 5.559 8 Si 0.781 3.219 9 H -0.177 1.177 10 H -0.226 1.226 11 H -0.206 1.206 12 N -0.838 5.838 13 C -0.054 4.054 14 S 2.806 3.194 15 O -0.974 6.974 16 O -1.003 7.003 17 N -0.867 5.867 18 C 0.136 3.864 19 H 0.145 0.855 20 C -0.015 4.015 21 O -0.380 6.380 22 C -0.100 4.100 23 N -0.144 5.144 24 N -0.191 5.191 25 C -0.129 4.129 26 N -0.159 5.159 27 C -0.087 4.087 28 H 0.037 0.963 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.255 0.745 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.242 0.758 39 H 0.274 0.726 40 H 0.135 0.865 41 H 0.132 0.868 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 8.272 -14.761 -8.258 18.828 hybrid contribution -0.114 -0.854 1.157 1.443 sum 8.158 -15.615 -7.102 18.995 Atomic orbital electron populations 1.21917 0.97547 1.00364 0.99818 1.18373 0.92099 0.91163 0.81463 0.96637 1.21589 1.31040 1.12943 0.90295 0.90860 1.25701 0.95340 0.95670 1.01949 1.70029 1.37649 1.24130 1.24095 0.85567 0.78021 0.78767 0.79585 1.17668 1.22560 1.20614 1.57636 1.64783 1.22889 1.38467 1.21599 1.01051 0.80021 1.02778 1.01322 0.72485 0.72271 0.73346 1.93538 1.86266 1.75974 1.41574 1.93553 1.84219 1.35215 1.87278 1.55876 1.30973 1.14985 1.84833 1.19305 0.92483 0.85068 0.89549 0.85454 1.22715 0.89413 0.94371 0.94985 1.86655 1.43468 1.61819 1.46020 1.24630 1.00907 0.87049 0.97400 1.74107 1.06848 1.25066 1.08358 1.74172 1.24688 1.09899 1.10354 1.27175 0.90672 0.96718 0.98355 1.46382 1.28662 1.17674 1.23191 1.22644 0.95855 0.82863 1.07361 0.96305 0.91515 0.93094 0.92940 0.92452 0.90016 0.89741 0.74466 0.89702 0.90748 0.75771 0.72564 0.86547 0.86844 0.88576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.33 8.97 71.98 0.65 -5.68 16 2 C 0.27 13.02 2.62 44.25 0.12 13.13 16 3 H 0.02 0.89 6.91 -2.39 -0.02 0.87 16 4 C -0.52 -25.22 7.99 25.60 0.20 -25.01 16 5 H 0.07 3.26 7.33 -2.91 -0.02 3.24 16 6 C 0.01 0.66 5.30 84.66 0.45 1.11 16 7 N -0.92 -51.33 11.32 21.45 0.24 -51.09 16 8 Si 0.95 40.62 29.54 68.60 2.03 42.65 16 9 H -0.25 -9.67 7.11 99.48 0.71 -8.96 16 10 H -0.30 -13.41 7.11 99.48 0.71 -12.70 16 11 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 12 N -1.00 -37.48 3.12 -520.44 -1.62 -39.11 16 13 C 0.09 2.51 9.08 127.77 1.16 3.67 16 14 S 2.80 105.43 6.00 -56.49 -0.34 105.09 16 15 O -0.99 -35.24 16.42 -128.00 -2.10 -37.34 16 16 O -1.02 -48.32 16.70 -128.00 -2.14 -50.46 16 17 N -1.11 -37.12 5.47 -172.51 -0.94 -38.06 16 18 C 0.25 6.45 2.99 44.24 0.13 6.58 16 19 H 0.13 2.60 4.86 -2.39 -0.01 2.58 16 20 C 0.07 1.38 6.87 71.98 0.49 1.87 16 21 O -0.57 -13.88 12.77 -148.98 -1.90 -15.78 16 22 C 0.17 5.04 6.50 137.98 0.90 5.94 16 23 N -0.30 -11.23 11.57 -50.15 -0.58 -11.81 16 24 N -0.35 -12.25 12.21 -59.99 -0.73 -12.98 16 25 C 0.16 3.87 12.74 180.11 2.30 6.17 16 26 N -0.47 -10.52 3.15 -542.06 -1.71 -12.22 16 27 C 0.05 0.60 11.00 127.77 1.41 2.01 16 28 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.07 3.46 6.07 -2.39 -0.01 3.45 16 30 H 0.05 2.11 7.67 -2.38 -0.02 2.09 16 31 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 32 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 33 H 0.08 1.63 6.16 -2.39 -0.01 1.61 16 34 H 0.08 2.31 7.02 -2.39 -0.02 2.29 16 35 H 0.42 15.50 8.63 -96.74 -0.84 14.66 16 36 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.07 1.54 7.59 -2.39 -0.02 1.52 16 38 H 0.39 5.61 9.12 -74.06 -0.68 4.93 16 39 H 0.26 3.43 8.06 -2.91 -0.02 3.41 16 40 H 0.12 0.55 8.14 -2.38 -0.02 0.53 16 41 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.10 1.07 7.06 -2.39 -0.02 1.05 16 Total: -1.00 -81.76 359.17 -2.43 -84.19 By element: Atomic # 1 Polarization: 27.56 SS G_CDS: -0.43 Total: 27.13 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: 7.80 Total: 9.78 kcal Atomic # 7 Polarization: -159.93 SS G_CDS: -5.34 Total: -165.27 kcal Atomic # 8 Polarization: -97.44 SS G_CDS: -6.14 Total: -103.58 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.65 kcal Atomic # 16 Polarization: 105.43 SS G_CDS: -0.34 Total: 105.09 kcal Total: -81.76 -2.43 -84.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414333061.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.972 kcal (2) G-P(sol) polarization free energy of solvation -81.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds