Wall clock time and date at job start Tue Mar 31 2020 18:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46963 * 2 1 4 4 C 1.50698 * 109.47404 * 239.99752 * 2 1 3 5 5 H 1.08001 * 120.00086 * 240.00091 * 4 2 1 6 6 C 1.37879 * 120.00103 * 60.00031 * 4 2 1 7 7 N 1.31510 * 119.99816 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99932 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47195 * 60.00068 * 8 6 4 10 10 H 1.48509 * 109.46872 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47095 * 299.99648 * 8 6 4 12 12 N 1.46501 * 109.46985 * 119.99502 * 2 1 3 13 13 C 1.46499 * 119.99738 * 60.00471 * 12 2 1 14 14 S 1.65605 * 120.00059 * 240.00066 * 12 2 1 15 15 O 1.42101 * 106.40154 * 336.46223 * 14 12 2 16 16 O 1.42099 * 106.40028 * 203.54007 * 14 12 2 17 17 N 1.65599 * 107.21689 * 90.00185 * 14 12 2 18 18 C 1.46498 * 120.00113 * 64.99931 * 17 14 12 19 19 H 1.09004 * 109.47200 * 24.99456 * 18 17 14 20 20 C 1.53002 * 109.47203 * 265.00466 * 18 17 14 21 21 O 1.42902 * 109.46659 * 294.99724 * 20 18 17 22 22 C 1.50697 * 109.47259 * 145.00045 * 18 17 14 23 23 N 1.30519 * 126.34476 * 44.99912 * 22 18 17 24 24 N 1.28600 * 109.66808 * 179.73098 * 23 22 18 25 25 C 1.30516 * 109.67696 * 0.44987 * 24 23 22 26 26 N 1.35495 * 107.30468 * 359.55808 * 25 24 23 27 27 C 1.46499 * 126.97946 * 180.26092 * 26 25 24 28 28 H 1.08995 * 109.47117 * 300.00647 * 1 2 3 29 29 H 1.09002 * 109.46750 * 60.00795 * 1 2 3 30 30 H 1.09001 * 109.46963 * 179.97438 * 1 2 3 31 31 H 0.97003 * 120.00145 * 180.02562 * 7 6 4 32 32 H 1.08997 * 109.46913 * 269.99668 * 13 12 2 33 33 H 1.08994 * 109.47502 * 30.00146 * 13 12 2 34 34 H 1.09006 * 109.47189 * 149.99946 * 13 12 2 35 35 H 0.97001 * 120.00030 * 245.00463 * 17 14 12 36 36 H 1.08994 * 109.47523 * 54.99336 * 20 18 17 37 37 H 1.09001 * 109.46945 * 175.00052 * 20 18 17 38 38 H 0.96707 * 114.00182 * 180.02562 * 21 20 18 39 39 H 1.08002 * 126.35125 * 179.82818 * 25 24 23 40 40 H 1.09004 * 109.47293 * 90.03308 * 27 26 25 41 41 H 1.09007 * 109.47309 * 210.02845 * 27 26 25 42 42 H 1.09000 * 109.47123 * 330.02746 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3215 -1.1205 -4.0078 9 1 1.8260 -2.5204 -4.0076 10 1 1.8272 -0.4201 -5.2204 11 1 3.8066 -1.1210 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 16 2.9704 0.1144 2.2863 15 8 3.5794 1.1831 1.5748 16 8 3.7117 -0.8787 2.9816 17 7 1.9606 0.8093 3.3998 18 6 1.1509 -0.0350 4.2817 19 1 1.6295 -1.0079 4.3935 20 6 -0.2415 -0.2186 3.6747 21 8 -0.9140 1.0417 3.6356 22 6 1.0275 0.6224 5.6321 23 7 0.7643 1.8805 5.8589 24 7 0.7280 2.0935 7.1266 25 6 0.9758 0.9830 7.7660 26 7 1.1692 0.0169 6.8359 27 6 1.4705 -1.3955 7.0819 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 0.7091 1.1612 -3.4845 32 1 0.7376 -2.1443 1.9994 33 1 1.5296 -2.5968 0.4710 34 1 2.4629 -2.5818 1.9865 35 1 1.9053 1.7753 3.4680 36 1 -0.1477 -0.6118 2.6625 37 1 -0.8144 -0.9173 4.2843 38 1 -1.8051 1.0007 3.2620 39 1 1.0148 0.8565 8.8379 40 1 0.5398 -1.9584 7.1540 41 1 2.0696 -1.7878 6.2601 42 1 2.0263 -1.4914 8.0147 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414333065.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:45 Heat of formation + Delta-G solvation = -28.574679 kcal Electronic energy + Delta-G solvation = -28730.275446 eV Core-core repulsion = 24681.797707 eV Total energy + Delta-G solvation = -4048.477739 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.130 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.21486 -37.71407 -36.73777 -36.19457 -35.32417 -35.27442 -34.71504 -32.62225 -30.66944 -29.16552 -28.37864 -27.82806 -25.61928 -25.21077 -23.71725 -22.49586 -20.85433 -20.70220 -18.95433 -17.93012 -17.40097 -17.03978 -16.83180 -16.60938 -16.36158 -15.91115 -15.35432 -15.08380 -14.72784 -14.34272 -14.08301 -13.71689 -13.54695 -13.50147 -13.21476 -12.85077 -12.71777 -12.13797 -11.90700 -11.89265 -11.68511 -11.55521 -11.46734 -11.38237 -11.25402 -10.94676 -10.85854 -10.53035 -10.39714 -10.34067 -10.26869 -10.11285 -9.91689 -9.59108 -9.34592 -9.23709 -8.46582 -8.06199 -6.08426 -4.15701 1.05234 1.67334 2.26400 2.84958 3.28421 3.33904 3.34859 3.38921 3.91828 4.03137 4.09664 4.28235 4.38265 4.42085 4.62883 4.72972 4.83878 4.97468 5.10673 5.15518 5.23231 5.27729 5.45345 5.57716 5.63064 5.92329 5.96070 6.01825 6.24720 6.59157 6.65077 6.76459 6.77980 7.01350 7.13620 7.43414 7.59751 7.71321 7.77051 8.03087 8.25033 8.69849 8.85664 9.50029 10.96984 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.022729 B = 0.003807 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.619615 B = 7352.925677 C = 7667.604427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.269 3.731 3 H 0.060 0.940 4 C -0.524 4.524 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.276 1.276 12 N -0.987 5.987 13 C 0.090 3.910 14 S 2.777 3.223 15 O -0.964 6.964 16 O -0.999 6.999 17 N -1.114 6.114 18 C 0.251 3.749 19 H 0.111 0.889 20 C 0.057 3.943 21 O -0.544 6.544 22 C 0.177 3.823 23 N -0.255 5.255 24 N -0.299 5.299 25 C 0.144 3.856 26 N -0.477 5.477 27 C 0.065 3.935 28 H 0.016 0.984 29 H 0.092 0.908 30 H 0.030 0.970 31 H 0.264 0.736 32 H 0.035 0.965 33 H 0.087 0.913 34 H 0.063 0.937 35 H 0.426 0.574 36 H 0.080 0.920 37 H 0.047 0.953 38 H 0.377 0.623 39 H 0.218 0.782 40 H 0.085 0.915 41 H 0.095 0.905 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.143 -7.919 18.448 20.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.167 3.833 3 H 0.078 0.922 4 C -0.563 4.563 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.830 5.830 13 C -0.056 4.056 14 S 2.786 3.214 15 O -0.948 6.948 16 O -0.983 6.983 17 N -0.872 5.872 18 C 0.139 3.861 19 H 0.129 0.871 20 C -0.024 4.024 21 O -0.349 6.349 22 C -0.092 4.092 23 N -0.095 5.095 24 N -0.138 5.138 25 C -0.143 4.143 26 N -0.169 5.169 27 C -0.078 4.078 28 H 0.035 0.965 29 H 0.111 0.889 30 H 0.049 0.951 31 H 0.074 0.926 32 H 0.053 0.947 33 H 0.106 0.894 34 H 0.082 0.918 35 H 0.261 0.739 36 H 0.098 0.902 37 H 0.066 0.934 38 H 0.224 0.776 39 H 0.234 0.766 40 H 0.103 0.897 41 H 0.114 0.886 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.977 -6.278 18.321 19.594 hybrid contribution -0.426 -1.788 -0.642 1.947 sum -3.403 -8.066 17.678 19.727 Atomic orbital electron populations 1.22141 0.98163 0.99456 1.00950 1.18744 0.91361 0.93087 0.80136 0.92210 1.21277 1.31867 1.13113 0.90060 0.91982 1.24897 0.94938 0.94982 0.98961 1.69849 1.36273 1.22507 1.23930 0.86568 0.79363 0.79498 0.82001 1.20296 1.21229 1.20181 1.57712 1.69870 1.19626 1.35815 1.21407 0.98460 0.82672 1.03094 1.02047 0.73607 0.73245 0.72499 1.93639 1.73987 1.55744 1.71423 1.93513 1.69191 1.60908 1.74658 1.56213 1.60932 1.18487 1.51570 1.18913 0.92087 0.92956 0.82133 0.87124 1.22815 0.91595 0.87026 1.00987 1.86649 1.32729 1.29185 1.86299 1.24640 1.04525 0.91566 0.88425 1.74309 1.16016 1.11714 1.07469 1.74331 1.18043 1.22195 0.99257 1.26431 1.04831 0.85047 0.98015 1.46224 1.52781 1.11248 1.06619 1.22219 1.03170 0.77495 1.04909 0.96499 0.88949 0.95076 0.92598 0.94665 0.89413 0.91827 0.73862 0.90193 0.93441 0.77607 0.76600 0.89684 0.88622 0.88645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 8.58 37.16 0.32 -2.81 16 2 C 0.27 6.29 2.62 -69.08 -0.18 6.11 16 3 H 0.06 1.60 6.91 -51.93 -0.36 1.24 16 4 C -0.52 -13.56 7.99 -34.44 -0.28 -13.84 16 5 H 0.06 1.58 7.33 -52.49 -0.38 1.20 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -24.25 11.32 55.43 0.63 -23.62 16 8 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 9 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 N -0.99 -18.94 2.69 -115.85 -0.31 -19.26 16 13 C 0.09 1.39 9.41 59.85 0.56 1.96 16 14 S 2.78 52.95 6.12 -107.50 -0.66 52.29 16 15 O -0.96 -22.64 16.70 -57.17 -0.95 -23.59 16 16 O -1.00 -19.20 16.08 -57.17 -0.92 -20.12 16 17 N -1.11 -17.78 5.47 -5.88 -0.03 -17.81 16 18 C 0.25 3.26 3.12 -69.08 -0.22 3.05 16 19 H 0.11 1.19 6.26 -51.93 -0.33 0.87 16 20 C 0.06 0.67 6.83 37.16 0.25 0.92 16 21 O -0.54 -7.28 12.77 -35.23 -0.45 -7.73 16 22 C 0.18 2.41 6.50 -154.99 -1.01 1.40 16 23 N -0.26 -4.21 11.57 32.79 0.38 -3.83 16 24 N -0.30 -4.50 12.21 29.69 0.36 -4.13 16 25 C 0.14 1.48 12.74 -89.95 -1.15 0.34 16 26 N -0.48 -4.75 3.15 -122.69 -0.39 -5.14 16 27 C 0.07 0.33 11.00 59.85 0.66 0.98 16 28 H 0.02 0.30 7.20 -51.93 -0.37 -0.07 16 29 H 0.09 2.24 6.07 -51.93 -0.32 1.92 16 30 H 0.03 0.61 7.67 -51.93 -0.40 0.21 16 31 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 32 H 0.03 0.43 6.38 -51.93 -0.33 0.09 16 33 H 0.09 1.45 7.02 -51.93 -0.36 1.09 16 34 H 0.06 0.90 7.02 -51.93 -0.36 0.54 16 35 H 0.43 7.10 8.63 -34.47 -0.30 6.81 16 36 H 0.08 0.99 4.26 -51.93 -0.22 0.77 16 37 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.38 3.61 9.12 45.56 0.42 4.02 16 39 H 0.22 1.13 8.06 -52.49 -0.42 0.70 16 40 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.10 0.49 7.06 -51.93 -0.37 0.12 16 42 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 LS Contribution 354.79 15.07 5.35 5.35 Total: -1.00 -36.81 354.79 -7.66 -44.46 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -4.51 Total: 7.75 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -1.13 Total: -0.27 kcal Atomic # 7 Polarization: -74.43 SS G_CDS: 0.64 Total: -73.79 kcal Atomic # 8 Polarization: -49.12 SS G_CDS: -2.32 Total: -51.44 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: 52.95 SS G_CDS: -0.66 Total: 52.29 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -36.81 -7.66 -44.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414333065.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.887 kcal (2) G-P(sol) polarization free energy of solvation -36.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds