Wall clock time and date at job start Tue Mar 31 2020 18:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46963 * 2 1 4 4 C 1.50698 * 109.47404 * 239.99752 * 2 1 3 5 5 H 1.08001 * 120.00086 * 240.00091 * 4 2 1 6 6 C 1.37879 * 120.00103 * 60.00031 * 4 2 1 7 7 N 1.31510 * 119.99816 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99932 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47195 * 60.00068 * 8 6 4 10 10 H 1.48509 * 109.46872 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47095 * 299.99648 * 8 6 4 12 12 N 1.46501 * 109.46985 * 119.99502 * 2 1 3 13 13 C 1.46499 * 119.99738 * 60.00471 * 12 2 1 14 14 S 1.65605 * 120.00059 * 240.00066 * 12 2 1 15 15 O 1.42101 * 106.40154 * 336.46223 * 14 12 2 16 16 O 1.42099 * 106.40028 * 203.54007 * 14 12 2 17 17 N 1.65599 * 107.21689 * 90.00185 * 14 12 2 18 18 C 1.46498 * 120.00113 * 64.99931 * 17 14 12 19 19 H 1.09004 * 109.47200 * 24.99456 * 18 17 14 20 20 C 1.53002 * 109.47203 * 265.00466 * 18 17 14 21 21 O 1.42902 * 109.46659 * 294.99724 * 20 18 17 22 22 C 1.50697 * 109.47259 * 145.00045 * 18 17 14 23 23 N 1.30519 * 126.34476 * 44.99912 * 22 18 17 24 24 N 1.28600 * 109.66808 * 179.73098 * 23 22 18 25 25 C 1.30516 * 109.67696 * 0.44987 * 24 23 22 26 26 N 1.35495 * 107.30468 * 359.55808 * 25 24 23 27 27 C 1.46499 * 126.97946 * 180.26092 * 26 25 24 28 28 H 1.08995 * 109.47117 * 300.00647 * 1 2 3 29 29 H 1.09002 * 109.46750 * 60.00795 * 1 2 3 30 30 H 1.09001 * 109.46963 * 179.97438 * 1 2 3 31 31 H 0.97003 * 120.00145 * 180.02562 * 7 6 4 32 32 H 1.08997 * 109.46913 * 269.99668 * 13 12 2 33 33 H 1.08994 * 109.47502 * 30.00146 * 13 12 2 34 34 H 1.09006 * 109.47189 * 149.99946 * 13 12 2 35 35 H 0.97001 * 120.00030 * 245.00463 * 17 14 12 36 36 H 1.08994 * 109.47523 * 54.99336 * 20 18 17 37 37 H 1.09001 * 109.46945 * 175.00052 * 20 18 17 38 38 H 0.96707 * 114.00182 * 180.02562 * 21 20 18 39 39 H 1.08002 * 126.35125 * 179.82818 * 25 24 23 40 40 H 1.09004 * 109.47293 * 90.03308 * 27 26 25 41 41 H 1.09007 * 109.47309 * 210.02845 * 27 26 25 42 42 H 1.09000 * 109.47123 * 330.02746 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3215 -1.1205 -4.0078 9 1 1.8260 -2.5204 -4.0076 10 1 1.8272 -0.4201 -5.2204 11 1 3.8066 -1.1210 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 16 2.9704 0.1144 2.2863 15 8 3.5794 1.1831 1.5748 16 8 3.7117 -0.8787 2.9816 17 7 1.9606 0.8093 3.3998 18 6 1.1509 -0.0350 4.2817 19 1 1.6295 -1.0079 4.3935 20 6 -0.2415 -0.2186 3.6747 21 8 -0.9140 1.0417 3.6356 22 6 1.0275 0.6224 5.6321 23 7 0.7643 1.8805 5.8589 24 7 0.7280 2.0935 7.1266 25 6 0.9758 0.9830 7.7660 26 7 1.1692 0.0169 6.8359 27 6 1.4705 -1.3955 7.0819 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 0.7091 1.1612 -3.4845 32 1 0.7376 -2.1443 1.9994 33 1 1.5296 -2.5968 0.4710 34 1 2.4629 -2.5818 1.9865 35 1 1.9053 1.7753 3.4680 36 1 -0.1477 -0.6118 2.6625 37 1 -0.8144 -0.9173 4.2843 38 1 -1.8051 1.0007 3.2620 39 1 1.0148 0.8565 8.8379 40 1 0.5398 -1.9584 7.1540 41 1 2.0696 -1.7878 6.2601 42 1 2.0263 -1.4914 8.0147 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414333065.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:45 Heat of formation + Delta-G solvation = -59.649479 kcal Electronic energy + Delta-G solvation = -28731.622951 eV Core-core repulsion = 24681.797707 eV Total energy + Delta-G solvation = -4049.825243 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.130 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.08236 -38.78883 -38.32365 -37.78689 -36.95441 -36.10030 -35.71402 -34.50025 -31.68971 -30.88922 -29.36145 -28.38380 -27.21163 -26.95557 -24.66750 -23.32141 -22.57979 -21.64041 -20.34145 -19.15995 -18.66975 -18.44932 -18.09567 -17.83026 -17.45857 -17.07299 -16.90050 -16.26083 -15.83954 -15.55535 -15.23256 -15.09393 -14.56585 -14.46297 -14.28794 -14.19702 -13.77370 -13.54510 -13.48373 -13.23168 -13.09749 -13.04086 -12.97105 -12.83256 -12.65307 -12.60257 -12.44408 -12.19667 -12.07566 -11.89490 -11.28416 -11.16220 -11.05804 -10.86827 -10.73856 -10.45904 -10.25143 -9.65069 -8.07827 -6.21504 -0.43542 0.84194 1.44972 1.47815 1.53848 1.56211 1.87878 2.04241 2.44975 2.57258 3.02627 3.20795 3.22834 3.38959 3.68393 3.87442 3.92066 4.03050 4.21592 4.29519 4.41782 4.46040 4.50705 4.72988 4.78499 4.81643 4.84462 4.97171 5.08552 5.14018 5.18022 5.22367 5.33494 5.65355 5.67431 5.88088 5.95321 5.96870 6.20369 6.34252 6.86506 6.95553 7.47347 7.79477 8.95831 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.022729 B = 0.003807 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.619615 B = 7352.925677 C = 7667.604427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.276 3.724 3 H 0.017 0.983 4 C -0.537 4.537 5 H 0.061 0.939 6 C 0.017 3.983 7 N -0.914 5.914 8 Si 0.954 3.046 9 H -0.263 1.263 10 H -0.286 1.286 11 H -0.281 1.281 12 N -0.990 5.990 13 C 0.081 3.919 14 S 2.796 3.204 15 O -1.016 7.016 16 O -1.001 7.001 17 N -1.109 6.109 18 C 0.242 3.758 19 H 0.136 0.864 20 C 0.058 3.942 21 O -0.569 6.569 22 C 0.167 3.833 23 N -0.303 5.303 24 N -0.353 5.353 25 C 0.165 3.835 26 N -0.471 5.471 27 C 0.053 3.947 28 H 0.039 0.961 29 H 0.060 0.940 30 H 0.047 0.953 31 H 0.263 0.737 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.422 0.578 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.391 0.609 39 H 0.265 0.735 40 H 0.110 0.890 41 H 0.095 0.905 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.777 -10.757 20.449 23.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.171 3.829 3 H 0.035 0.965 4 C -0.577 4.577 5 H 0.080 0.920 6 C -0.183 4.183 7 N -0.553 5.553 8 Si 0.780 3.220 9 H -0.188 1.188 10 H -0.212 1.212 11 H -0.207 1.207 12 N -0.832 5.832 13 C -0.064 4.064 14 S 2.805 3.195 15 O -1.000 7.000 16 O -0.984 6.984 17 N -0.868 5.868 18 C 0.132 3.868 19 H 0.153 0.847 20 C -0.023 4.023 21 O -0.376 6.376 22 C -0.104 4.104 23 N -0.143 5.143 24 N -0.193 5.193 25 C -0.123 4.123 26 N -0.161 5.161 27 C -0.088 4.088 28 H 0.058 0.942 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.257 0.743 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.240 0.760 39 H 0.281 0.719 40 H 0.128 0.872 41 H 0.114 0.886 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.620 -9.176 20.338 22.604 hybrid contribution -0.214 -0.960 -1.094 1.471 sum -3.834 -10.136 19.244 22.085 Atomic orbital electron populations 1.21896 0.96413 1.00279 1.00488 1.18371 0.92515 0.91035 0.80947 0.96511 1.21644 1.31623 1.13115 0.91303 0.92046 1.25629 0.95274 0.95686 1.01665 1.69989 1.37321 1.23683 1.24276 0.85680 0.78342 0.79157 0.78831 1.18763 1.21160 1.20682 1.57498 1.69800 1.21158 1.34783 1.21694 1.01007 0.80278 1.03400 1.01248 0.73508 0.72362 0.72344 1.93566 1.75720 1.57695 1.73055 1.93498 1.69526 1.60827 1.74524 1.55896 1.61133 1.18412 1.51400 1.19316 0.92658 0.93210 0.81651 0.84659 1.22870 0.91216 0.87062 1.01143 1.86631 1.33938 1.30451 1.86602 1.24564 1.04934 0.91343 0.89572 1.74189 1.17770 1.13760 1.08622 1.74214 1.20882 1.24927 0.99249 1.27304 1.01523 0.83815 0.99701 1.46468 1.51543 1.12944 1.05187 1.22675 1.04985 0.74766 1.06354 0.94239 0.92082 0.93431 0.92793 0.90675 0.90533 0.90303 0.74348 0.90816 0.89882 0.76045 0.71896 0.87186 0.88644 0.85775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.53 8.58 71.98 0.62 -4.91 16 2 C 0.28 13.04 2.62 44.24 0.12 13.15 16 3 H 0.02 0.95 6.91 -2.39 -0.02 0.93 16 4 C -0.54 -28.05 7.99 25.60 0.20 -27.85 16 5 H 0.06 3.13 7.33 -2.91 -0.02 3.11 16 6 C 0.02 0.93 5.30 84.66 0.45 1.38 16 7 N -0.91 -51.02 11.32 21.45 0.24 -50.77 16 8 Si 0.95 42.48 29.54 68.60 2.03 44.50 16 9 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 10 H -0.29 -12.60 7.11 99.48 0.71 -11.90 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 12 N -0.99 -37.31 2.69 -520.45 -1.40 -38.71 16 13 C 0.08 2.31 9.41 127.77 1.20 3.52 16 14 S 2.80 106.44 6.12 -56.49 -0.35 106.09 16 15 O -1.02 -49.57 16.70 -128.00 -2.14 -51.70 16 16 O -1.00 -37.12 16.08 -128.00 -2.06 -39.18 16 17 N -1.11 -35.05 5.47 -172.52 -0.94 -36.00 16 18 C 0.24 5.81 3.12 44.25 0.14 5.95 16 19 H 0.14 2.47 6.26 -2.38 -0.01 2.45 16 20 C 0.06 1.20 6.83 71.98 0.49 1.70 16 21 O -0.57 -14.60 12.77 -148.98 -1.90 -16.50 16 22 C 0.17 4.25 6.50 137.98 0.90 5.14 16 23 N -0.30 -9.95 11.57 -50.16 -0.58 -10.53 16 24 N -0.35 -10.40 12.21 -59.99 -0.73 -11.13 16 25 C 0.16 2.95 12.74 180.11 2.30 5.24 16 26 N -0.47 -7.93 3.15 -542.06 -1.71 -9.63 16 27 C 0.05 0.30 11.00 127.77 1.41 1.70 16 28 H 0.04 1.44 7.20 -2.39 -0.02 1.42 16 29 H 0.06 2.99 6.07 -2.39 -0.01 2.98 16 30 H 0.05 1.80 7.67 -2.39 -0.02 1.78 16 31 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 32 H 0.07 1.54 6.38 -2.39 -0.02 1.52 16 33 H 0.08 2.39 7.02 -2.39 -0.02 2.37 16 34 H 0.08 2.01 7.02 -2.38 -0.02 1.99 16 35 H 0.42 14.50 8.63 -96.75 -0.84 13.67 16 36 H 0.07 1.61 4.26 -2.39 -0.01 1.60 16 37 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.39 7.01 9.12 -74.05 -0.68 6.33 16 39 H 0.27 1.60 8.06 -2.91 -0.02 1.57 16 40 H 0.11 0.12 8.14 -2.38 -0.02 0.10 16 41 H 0.09 0.59 7.06 -2.38 -0.02 0.57 16 42 H 0.12 0.01 8.14 -2.39 -0.02 -0.01 16 Total: -1.00 -83.69 354.79 -2.14 -85.83 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: -0.42 Total: 22.71 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: 7.82 Total: 5.02 kcal Atomic # 7 Polarization: -151.65 SS G_CDS: -5.12 Total: -156.77 kcal Atomic # 8 Polarization: -101.28 SS G_CDS: -6.10 Total: -107.38 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.50 kcal Atomic # 16 Polarization: 106.44 SS G_CDS: -0.35 Total: 106.09 kcal Total: -83.69 -2.14 -85.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414333065.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.179 kcal (2) G-P(sol) polarization free energy of solvation -83.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds