Wall clock time and date at job start Tue Mar 31 2020 18:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46507 * 109.47019 * 2 1 4 4 C 1.46500 * 119.99843 * 297.19570 * 3 2 1 5 5 C 1.50699 * 109.47374 * 275.00184 * 4 3 2 6 6 H 1.08006 * 119.99647 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00388 * 180.02562 * 5 4 3 8 8 N 1.31523 * 119.99765 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00489 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46663 * 0.02562 * 9 7 5 11 11 H 1.48495 * 109.47285 * 119.99674 * 9 7 5 12 12 H 1.48494 * 109.47477 * 240.00398 * 9 7 5 13 13 S 1.65592 * 120.00172 * 117.19417 * 3 2 1 14 14 O 1.42103 * 106.40449 * 150.73633 * 13 3 2 15 15 O 1.42101 * 106.40025 * 17.81930 * 13 3 2 16 16 N 1.65599 * 107.22097 * 264.27924 * 13 3 2 17 17 C 1.46499 * 119.99722 * 64.08420 * 16 13 3 18 18 H 1.08994 * 109.47414 * 338.05674 * 17 16 13 19 19 C 1.53000 * 109.47026 * 98.05812 * 17 16 13 20 20 C 1.50705 * 109.46980 * 218.05590 * 17 16 13 21 21 N 1.30337 * 126.35934 * 315.02774 * 20 17 16 22 22 N 1.28535 * 109.99251 * 179.70722 * 21 20 17 23 23 C 1.31036 * 109.85575 * 0.44971 * 22 21 20 24 24 O 1.35540 * 126.44034 * 179.82099 * 23 22 21 25 25 N 1.36309 * 107.10962 * 359.56455 * 23 22 21 26 26 C 1.46499 * 127.12053 * 180.28168 * 25 23 22 27 27 H 1.09001 * 109.46885 * 172.20651 * 1 2 3 28 28 H 1.08998 * 109.47136 * 292.19986 * 1 2 3 29 29 H 1.08996 * 109.47566 * 52.20173 * 1 2 3 30 30 H 1.09002 * 109.47281 * 240.00098 * 2 1 3 31 31 H 1.08995 * 109.47565 * 119.99557 * 2 1 3 32 32 H 1.09006 * 109.46973 * 35.00041 * 4 3 2 33 33 H 1.08994 * 109.47292 * 154.99528 * 4 3 2 34 34 H 0.96996 * 119.99524 * 179.97438 * 8 7 5 35 35 H 0.97002 * 119.99836 * 244.08809 * 16 13 3 36 36 H 1.08995 * 109.47216 * 179.97438 * 19 17 16 37 37 H 1.08994 * 109.47221 * 300.00016 * 19 17 16 38 38 H 1.09004 * 109.47023 * 59.99642 * 19 17 16 39 39 H 0.96695 * 113.99782 * 269.68845 * 24 23 22 40 40 H 1.09003 * 109.46758 * 89.97172 * 26 25 23 41 41 H 1.09000 * 109.46716 * 209.96978 * 26 25 23 42 42 H 1.08996 * 109.47436 * 329.97715 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 1.7157 2.2651 -1.1285 5 6 2.7364 2.0569 -2.2174 6 1 3.5313 1.3383 -2.0822 7 6 2.6562 2.7844 -3.3859 8 7 1.6885 3.6598 -3.5503 9 14 3.9218 2.5269 -4.7354 10 1 4.8987 1.4935 -4.3071 11 1 3.2390 2.0780 -5.9753 12 1 4.6337 3.8036 -4.9967 13 16 2.9122 1.9435 1.2755 14 8 3.7747 2.9437 0.7512 15 8 3.3836 0.7976 1.9711 16 7 1.8685 2.7173 2.3023 17 6 0.8067 1.9629 2.9729 18 1 0.6017 1.0495 2.4145 19 6 1.2538 1.6041 4.3914 20 6 -0.4426 2.8033 3.0374 21 7 -0.5118 4.0602 3.3752 22 7 -1.7305 4.4645 3.3170 23 6 -2.5094 3.4782 2.9459 24 8 -3.8535 3.5323 2.7802 25 7 -1.7128 2.3891 2.7524 26 6 -2.1319 1.0516 2.3263 27 1 -0.3633 -1.0182 -0.1394 28 1 -0.3633 0.3883 0.9515 29 1 -0.3634 0.6298 -0.8120 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 0.7220 2.0358 -1.5133 33 1 1.7459 3.3026 -0.7957 34 1 1.6323 4.1719 -4.3722 35 1 1.9602 3.6701 2.4597 36 1 0.4637 1.0432 4.8904 37 1 2.1574 0.9963 4.3447 38 1 1.4588 2.5175 4.9497 39 1 -4.3570 3.3148 3.5766 40 1 -2.1040 0.9916 1.2383 41 1 -1.4567 0.3075 2.7488 42 1 -3.1469 0.8608 2.6746 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001475447976.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:35 Heat of formation + Delta-G solvation = -25.007691 kcal Electronic energy + Delta-G solvation = -28664.730207 eV Core-core repulsion = 24616.407145 eV Total energy + Delta-G solvation = -4048.323062 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.130 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.24363 -38.03711 -36.98924 -36.36902 -36.12422 -35.25213 -35.10045 -32.67611 -30.49014 -30.08589 -29.01957 -27.94613 -26.79536 -24.26760 -23.38228 -22.54539 -21.61228 -20.96913 -19.19510 -18.90183 -17.74404 -17.31016 -16.86148 -16.52125 -16.42058 -16.00533 -15.38261 -15.07650 -14.70676 -14.37507 -13.98787 -13.91648 -13.57314 -13.43650 -13.23881 -12.94621 -12.81400 -12.45726 -12.17765 -12.07583 -11.87639 -11.72247 -11.68456 -11.47032 -11.38890 -11.32169 -11.08352 -10.86701 -10.69694 -10.49115 -10.39920 -10.35828 -10.04909 -9.79942 -9.62143 -9.23043 -8.45812 -8.15841 -6.07369 -4.11293 1.06384 1.38151 1.84112 2.56339 3.30466 3.36843 3.38798 3.44055 3.47573 3.84040 4.10242 4.21519 4.42934 4.44081 4.69278 4.81842 4.92831 5.01345 5.08624 5.24198 5.27731 5.29813 5.43119 5.51444 5.58624 5.62144 5.65918 5.76853 5.92904 6.06001 6.17087 6.22850 6.43149 6.51605 7.04350 7.04994 7.22196 7.35963 7.55555 7.89816 8.18211 8.48829 8.91204 9.54073 11.01321 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013500 B = 0.004497 C = 0.003996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.551934 B = 6224.680880 C = 7006.101354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.115 3.885 3 N -0.992 5.992 4 C 0.258 3.742 5 C -0.526 4.526 6 H 0.061 0.939 7 C 0.061 3.939 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.282 1.282 13 S 2.777 3.223 14 O -0.955 6.955 15 O -0.994 6.994 16 N -1.120 6.120 17 C 0.249 3.751 18 H 0.098 0.902 19 C -0.164 4.164 20 C 0.186 3.814 21 N -0.262 5.262 22 N -0.280 5.280 23 C 0.346 3.654 24 O -0.433 6.433 25 N -0.479 5.479 26 C 0.063 3.937 27 H 0.062 0.938 28 H 0.042 0.958 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.036 0.964 33 H 0.035 0.965 34 H 0.263 0.737 35 H 0.423 0.577 36 H 0.064 0.936 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.403 0.597 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.942 -9.086 15.709 21.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.011 4.011 3 N -0.834 5.834 4 C 0.137 3.863 5 C -0.566 4.566 6 H 0.080 0.920 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.208 1.208 13 S 2.784 3.216 14 O -0.938 6.938 15 O -0.977 6.977 16 N -0.879 5.879 17 C 0.138 3.862 18 H 0.116 0.884 19 C -0.224 4.224 20 C -0.082 4.082 21 N -0.104 5.104 22 N -0.130 5.130 23 C 0.042 3.958 24 O -0.232 6.232 25 N -0.182 5.182 26 C -0.080 4.080 27 H 0.081 0.919 28 H 0.060 0.940 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.073 0.927 35 H 0.258 0.742 36 H 0.083 0.917 37 H 0.105 0.895 38 H 0.093 0.907 39 H 0.260 0.740 40 H 0.113 0.887 41 H 0.114 0.886 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.706 -7.721 15.490 19.843 hybrid contribution -0.731 -0.962 -0.994 1.565 sum -10.437 -8.684 14.496 19.861 Atomic orbital electron populations 1.22408 0.97352 1.01983 1.01751 1.21158 0.93550 0.83218 1.03208 1.57773 1.71972 1.19303 1.34401 1.19028 0.97202 0.87669 0.82447 1.21486 1.12138 1.22634 1.00299 0.92043 1.24937 0.95809 0.94842 0.98486 1.69935 1.31937 1.24715 1.26888 0.86454 0.81437 0.78272 0.81349 1.19623 1.21049 1.20790 1.02185 0.73625 0.73306 0.72446 1.93670 1.62218 1.59953 1.77965 1.93532 1.78835 1.51307 1.74063 1.56413 1.46785 1.22191 1.62462 1.18821 0.80343 0.91021 0.96049 0.88388 1.22315 1.02796 1.03284 0.94013 1.24813 0.86176 0.94597 1.02619 1.74153 1.11118 1.07186 1.17968 1.74624 0.97046 1.22469 1.18908 1.22011 0.85789 0.84179 1.03839 1.84963 1.08926 1.90028 1.39280 1.46599 1.08068 1.11983 1.51599 1.22396 1.02568 0.79943 1.03058 0.91876 0.93958 0.90957 0.90381 0.90254 0.94570 0.94699 0.92735 0.74167 0.91666 0.89500 0.90663 0.74006 0.88683 0.88583 0.88865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.13 9.70 37.16 0.36 -1.77 16 2 C 0.12 1.78 6.20 -4.04 -0.03 1.75 16 3 N -0.99 -19.29 2.95 -115.66 -0.34 -19.63 16 4 C 0.26 6.28 4.98 -5.19 -0.03 6.26 16 5 C -0.53 -14.53 9.38 -34.44 -0.32 -14.85 16 6 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 8 N -0.90 -26.21 13.29 55.43 0.74 -25.47 16 9 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 S 2.78 52.71 5.95 -107.50 -0.64 52.07 16 14 O -0.95 -22.63 17.32 -57.17 -0.99 -23.62 16 15 O -0.99 -18.65 16.14 -57.17 -0.92 -19.57 16 16 N -1.12 -17.08 5.50 -5.88 -0.03 -17.12 16 17 C 0.25 3.06 3.16 -69.08 -0.22 2.84 16 18 H 0.10 1.06 4.71 -51.93 -0.24 0.81 16 19 C -0.16 -1.65 9.50 37.16 0.35 -1.30 16 20 C 0.19 2.47 6.89 -154.11 -1.06 1.40 16 21 N -0.26 -4.15 11.98 32.97 0.39 -3.75 16 22 N -0.28 -4.42 12.22 29.65 0.36 -4.05 16 23 C 0.35 4.33 9.22 -88.76 -0.82 3.51 16 24 O -0.43 -3.98 13.62 -18.32 -0.25 -4.23 16 25 N -0.48 -5.26 3.20 -122.48 -0.39 -5.65 16 26 C 0.06 0.41 9.49 59.85 0.57 0.98 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.04 0.42 2.98 -51.93 -0.15 0.26 16 29 H 0.07 1.06 6.51 -51.93 -0.34 0.72 16 30 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.08 1.07 6.73 -51.93 -0.35 0.72 16 32 H 0.04 0.89 6.46 -51.93 -0.34 0.55 16 33 H 0.04 0.93 7.77 -51.93 -0.40 0.53 16 34 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.42 6.42 8.69 -34.47 -0.30 6.12 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.09 0.91 7.97 -51.93 -0.41 0.49 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.40 1.27 9.06 45.56 0.41 1.68 16 40 H 0.09 0.69 6.76 -51.93 -0.35 0.34 16 41 H 0.10 0.43 7.14 -51.93 -0.37 0.06 16 42 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 358.61 15.07 5.40 5.40 Total: -1.00 -37.91 358.61 -7.49 -45.40 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -4.51 Total: 2.96 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -1.29 Total: 0.46 kcal Atomic # 7 Polarization: -76.40 SS G_CDS: 0.73 Total: -75.68 kcal Atomic # 8 Polarization: -45.26 SS G_CDS: -2.16 Total: -47.43 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 52.71 SS G_CDS: -0.64 Total: 52.07 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -37.91 -7.49 -45.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001475447976.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.391 kcal (2) G-P(sol) polarization free energy of solvation -37.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds