Wall clock time and date at job start Tue Mar 31 2020 18:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46507 * 109.47019 * 2 1 4 4 C 1.46500 * 119.99843 * 297.19570 * 3 2 1 5 5 C 1.50699 * 109.47374 * 275.00184 * 4 3 2 6 6 H 1.08006 * 119.99647 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00388 * 180.02562 * 5 4 3 8 8 N 1.31523 * 119.99765 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00489 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46663 * 0.02562 * 9 7 5 11 11 H 1.48495 * 109.47285 * 119.99674 * 9 7 5 12 12 H 1.48494 * 109.47477 * 240.00398 * 9 7 5 13 13 S 1.65592 * 120.00172 * 117.19417 * 3 2 1 14 14 O 1.42103 * 106.40449 * 150.73633 * 13 3 2 15 15 O 1.42101 * 106.40025 * 17.81930 * 13 3 2 16 16 N 1.65599 * 107.22097 * 264.27924 * 13 3 2 17 17 C 1.46499 * 119.99722 * 64.08420 * 16 13 3 18 18 H 1.08994 * 109.47414 * 338.05674 * 17 16 13 19 19 C 1.53000 * 109.47026 * 98.05812 * 17 16 13 20 20 C 1.50705 * 109.46980 * 218.05590 * 17 16 13 21 21 N 1.30337 * 126.35934 * 315.02774 * 20 17 16 22 22 N 1.28535 * 109.99251 * 179.70722 * 21 20 17 23 23 C 1.31036 * 109.85575 * 0.44971 * 22 21 20 24 24 O 1.35540 * 126.44034 * 179.82099 * 23 22 21 25 25 N 1.36309 * 107.10962 * 359.56455 * 23 22 21 26 26 C 1.46499 * 127.12053 * 180.28168 * 25 23 22 27 27 H 1.09001 * 109.46885 * 172.20651 * 1 2 3 28 28 H 1.08998 * 109.47136 * 292.19986 * 1 2 3 29 29 H 1.08996 * 109.47566 * 52.20173 * 1 2 3 30 30 H 1.09002 * 109.47281 * 240.00098 * 2 1 3 31 31 H 1.08995 * 109.47565 * 119.99557 * 2 1 3 32 32 H 1.09006 * 109.46973 * 35.00041 * 4 3 2 33 33 H 1.08994 * 109.47292 * 154.99528 * 4 3 2 34 34 H 0.96996 * 119.99524 * 179.97438 * 8 7 5 35 35 H 0.97002 * 119.99836 * 244.08809 * 16 13 3 36 36 H 1.08995 * 109.47216 * 179.97438 * 19 17 16 37 37 H 1.08994 * 109.47221 * 300.00016 * 19 17 16 38 38 H 1.09004 * 109.47023 * 59.99642 * 19 17 16 39 39 H 0.96695 * 113.99782 * 269.68845 * 24 23 22 40 40 H 1.09003 * 109.46758 * 89.97172 * 26 25 23 41 41 H 1.09000 * 109.46716 * 209.96978 * 26 25 23 42 42 H 1.08996 * 109.47436 * 329.97715 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 1.7157 2.2651 -1.1285 5 6 2.7364 2.0569 -2.2174 6 1 3.5313 1.3383 -2.0822 7 6 2.6562 2.7844 -3.3859 8 7 1.6885 3.6598 -3.5503 9 14 3.9218 2.5269 -4.7354 10 1 4.8987 1.4935 -4.3071 11 1 3.2390 2.0780 -5.9753 12 1 4.6337 3.8036 -4.9967 13 16 2.9122 1.9435 1.2755 14 8 3.7747 2.9437 0.7512 15 8 3.3836 0.7976 1.9711 16 7 1.8685 2.7173 2.3023 17 6 0.8067 1.9629 2.9729 18 1 0.6017 1.0495 2.4145 19 6 1.2538 1.6041 4.3914 20 6 -0.4426 2.8033 3.0374 21 7 -0.5118 4.0602 3.3752 22 7 -1.7305 4.4645 3.3170 23 6 -2.5094 3.4782 2.9459 24 8 -3.8535 3.5323 2.7802 25 7 -1.7128 2.3891 2.7524 26 6 -2.1319 1.0516 2.3263 27 1 -0.3633 -1.0182 -0.1394 28 1 -0.3633 0.3883 0.9515 29 1 -0.3634 0.6298 -0.8120 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 0.7220 2.0358 -1.5133 33 1 1.7459 3.3026 -0.7957 34 1 1.6323 4.1719 -4.3722 35 1 1.9602 3.6701 2.4597 36 1 0.4637 1.0432 4.8904 37 1 2.1574 0.9963 4.3447 38 1 1.4588 2.5175 4.9497 39 1 -4.3570 3.3148 3.5766 40 1 -2.1040 0.9916 1.2383 41 1 -1.4567 0.3075 2.7488 42 1 -3.1469 0.8608 2.6746 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001475447976.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:34 Heat of formation + Delta-G solvation = -59.227731 kcal Electronic energy + Delta-G solvation = -28666.214100 eV Core-core repulsion = 24616.407145 eV Total energy + Delta-G solvation = -4049.806955 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.130 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.18731 -38.84376 -38.41737 -37.84011 -37.40037 -36.88693 -35.94714 -34.70660 -31.59640 -31.48164 -29.96395 -28.83452 -28.42625 -25.21145 -25.15282 -23.43534 -23.06758 -21.93630 -20.39805 -19.88440 -19.17489 -18.56324 -18.41515 -18.06864 -17.53923 -17.20158 -16.89283 -16.22621 -15.91443 -15.65818 -15.34723 -14.97155 -14.76640 -14.56835 -14.33866 -13.84612 -13.76061 -13.63838 -13.56114 -13.46381 -13.28314 -13.15406 -13.03094 -12.90210 -12.75262 -12.66633 -12.61165 -12.37014 -12.33347 -12.15284 -11.75662 -11.62440 -11.31697 -11.20824 -10.86590 -10.60022 -10.24015 -9.83027 -8.21352 -6.32573 -0.41915 0.48903 1.00165 1.37040 1.40493 1.51527 1.56551 1.98886 2.39121 2.52634 2.71358 3.08081 3.10188 3.39828 3.45806 3.69915 3.92776 4.00026 4.13024 4.26731 4.36171 4.41099 4.51349 4.52881 4.62510 4.71563 4.81392 4.87327 4.98461 5.01842 5.11889 5.17746 5.28879 5.36190 5.51020 5.55549 5.70959 5.80384 6.00125 6.10629 6.43658 6.76538 7.36499 7.50795 8.86467 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013500 B = 0.004497 C = 0.003996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.551934 B = 6224.680880 C = 7006.101354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.102 3.898 3 N -0.996 5.996 4 C 0.277 3.723 5 C -0.542 4.542 6 H 0.055 0.945 7 C 0.010 3.990 8 N -0.927 5.927 9 Si 0.956 3.044 10 H -0.267 1.267 11 H -0.270 1.270 12 H -0.283 1.283 13 S 2.794 3.206 14 O -1.009 7.009 15 O -0.990 6.990 16 N -1.115 6.115 17 C 0.243 3.757 18 H 0.117 0.883 19 C -0.161 4.161 20 C 0.183 3.817 21 N -0.298 5.298 22 N -0.329 5.329 23 C 0.358 3.642 24 O -0.433 6.433 25 N -0.472 5.472 26 C 0.047 3.953 27 H 0.099 0.901 28 H 0.064 0.936 29 H 0.043 0.957 30 H 0.066 0.934 31 H 0.104 0.896 32 H 0.033 0.967 33 H 0.004 0.996 34 H 0.266 0.734 35 H 0.423 0.577 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.430 0.570 40 H 0.089 0.911 41 H 0.122 0.878 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.224 -11.626 16.520 23.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.023 4.023 3 N -0.838 5.838 4 C 0.153 3.847 5 C -0.581 4.581 6 H 0.073 0.927 7 C -0.189 4.189 8 N -0.568 5.568 9 Si 0.781 3.219 10 H -0.191 1.191 11 H -0.195 1.195 12 H -0.209 1.209 13 S 2.802 3.198 14 O -0.993 6.993 15 O -0.973 6.973 16 N -0.875 5.875 17 C 0.133 3.867 18 H 0.135 0.865 19 C -0.220 4.220 20 C -0.087 4.087 21 N -0.140 5.140 22 N -0.180 5.180 23 C 0.052 3.948 24 O -0.237 6.237 25 N -0.174 5.174 26 C -0.093 4.093 27 H 0.117 0.883 28 H 0.083 0.917 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.122 0.878 32 H 0.051 0.949 33 H 0.022 0.978 34 H 0.075 0.925 35 H 0.259 0.741 36 H 0.116 0.884 37 H 0.103 0.897 38 H 0.087 0.913 39 H 0.292 0.708 40 H 0.107 0.893 41 H 0.141 0.859 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -11.021 -10.318 16.327 22.237 hybrid contribution -0.455 -0.235 -1.165 1.273 sum -11.476 -10.554 15.161 21.747 Atomic orbital electron populations 1.22351 0.94578 1.03807 1.01920 1.21523 0.96006 0.80909 1.03863 1.57636 1.72191 1.20539 1.33422 1.18494 0.96166 0.86986 0.83031 1.21852 1.12543 1.22311 1.01404 0.92701 1.25751 0.97655 0.94661 1.00841 1.70033 1.33497 1.25596 1.27647 0.85536 0.79214 0.78106 0.79036 1.19118 1.19541 1.20887 1.01456 0.73379 0.72621 0.72350 1.93595 1.64741 1.61701 1.79242 1.93526 1.79030 1.51028 1.73752 1.56086 1.47412 1.22294 1.61735 1.19209 0.79189 0.90903 0.97423 0.86526 1.22315 1.03802 1.03409 0.92506 1.24851 0.87187 0.94144 1.02501 1.74039 1.11692 1.08789 1.19488 1.74496 0.97585 1.24454 1.21440 1.22032 0.86781 0.84020 1.02004 1.84929 1.07379 1.90111 1.41235 1.46748 1.06910 1.13079 1.50678 1.22863 1.05300 0.78176 1.03008 0.88258 0.91682 0.93816 0.91586 0.87776 0.94945 0.97829 0.92543 0.74140 0.88392 0.89687 0.91266 0.70798 0.89259 0.85920 0.85602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.63 9.70 71.98 0.70 -2.93 16 2 C 0.10 2.97 6.20 86.38 0.54 3.51 16 3 N -1.00 -38.68 2.95 -519.85 -1.53 -40.21 16 4 C 0.28 13.83 4.98 85.63 0.43 14.26 16 5 C -0.54 -30.49 9.38 25.60 0.24 -30.25 16 6 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 7 C 0.01 0.57 5.46 84.65 0.46 1.03 16 8 N -0.93 -55.28 13.29 21.45 0.28 -55.00 16 9 Si 0.96 45.02 29.54 68.60 2.03 47.04 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 11 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 12 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 13 S 2.79 106.24 5.95 -56.49 -0.34 105.90 16 14 O -1.01 -49.48 17.32 -128.00 -2.22 -51.69 16 15 O -0.99 -35.83 16.14 -128.00 -2.07 -37.90 16 16 N -1.11 -33.82 5.50 -172.52 -0.95 -34.77 16 17 C 0.24 5.52 3.16 44.25 0.14 5.66 16 18 H 0.12 2.14 4.71 -2.39 -0.01 2.13 16 19 C -0.16 -2.83 9.50 71.98 0.68 -2.15 16 20 C 0.18 4.61 6.89 137.67 0.95 5.55 16 21 N -0.30 -9.46 11.98 -49.59 -0.59 -10.06 16 22 N -0.33 -10.38 12.22 -173.66 -2.12 -12.51 16 23 C 0.36 8.41 9.22 179.70 1.66 10.07 16 24 O -0.43 -6.98 13.62 -88.45 -1.20 -8.19 16 25 N -0.47 -9.26 3.20 -652.22 -2.09 -11.34 16 26 C 0.05 0.43 9.49 127.77 1.21 1.64 16 27 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.06 1.07 2.98 -2.39 -0.01 1.06 16 29 H 0.04 1.22 6.51 -2.39 -0.02 1.21 16 30 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.10 2.52 6.73 -2.39 -0.02 2.50 16 32 H 0.03 1.64 6.46 -2.38 -0.02 1.62 16 33 H 0.00 0.21 7.77 -2.39 -0.02 0.19 16 34 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 35 H 0.42 13.23 8.69 -96.74 -0.84 12.39 16 36 H 0.10 1.09 8.14 -2.39 -0.02 1.08 16 37 H 0.08 1.56 7.97 -2.39 -0.02 1.54 16 38 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.43 1.46 9.06 -74.06 -0.67 0.79 16 40 H 0.09 0.99 6.76 -2.39 -0.02 0.98 16 41 H 0.12 0.48 7.14 -2.39 -0.02 0.46 16 42 H 0.13 0.36 8.14 -2.39 -0.02 0.34 16 Total: -1.00 -85.25 358.61 -4.21 -89.47 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -0.42 Total: 12.86 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: 7.00 Total: 6.39 kcal Atomic # 7 Polarization: -156.88 SS G_CDS: -7.00 Total: -163.88 kcal Atomic # 8 Polarization: -92.29 SS G_CDS: -5.49 Total: -97.77 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Atomic # 16 Polarization: 106.24 SS G_CDS: -0.34 Total: 105.90 kcal Total: -85.25 -4.21 -89.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001475447976.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.238 kcal (2) G-P(sol) polarization free energy of solvation -85.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds