Wall clock time and date at job start Tue Mar 31 2020 17:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47080 * 2 1 4 4 H 1.08994 * 109.47567 * 305.00833 * 3 2 1 5 5 C 1.52995 * 109.47104 * 185.00361 * 3 2 1 6 6 N 1.46500 * 109.47361 * 185.00342 * 5 3 2 7 7 C 1.34770 * 120.00423 * 180.02562 * 6 5 3 8 8 O 1.21770 * 119.99995 * 359.97438 * 7 6 5 9 9 C 1.46108 * 120.00529 * 180.02562 * 7 6 5 10 10 S 1.75823 * 125.47380 * 359.68956 * 9 7 6 11 11 C 1.70572 * 91.67512 * 179.91705 * 10 9 7 12 12 C 1.33582 * 111.17012 * 0.35919 * 11 10 9 13 13 C 1.37352 * 125.48329 * 180.02562 * 9 7 6 14 14 N 1.39882 * 123.48438 * 359.97438 * 13 9 7 15 15 C 1.36599 * 125.67097 * 309.68529 * 14 13 9 16 16 C 1.34837 * 108.20013 * 179.87048 * 15 14 13 17 17 C 1.40972 * 107.47153 * 0.39430 * 16 15 14 18 18 C 1.34843 * 107.47174 * 359.75568 * 17 16 15 19 19 N 1.46505 * 109.46692 * 65.00756 * 3 2 1 20 20 C 1.36931 * 119.99788 * 274.99780 * 19 3 2 21 21 H 1.08002 * 120.00438 * 0.02562 * 20 19 3 22 22 C 1.38817 * 119.99680 * 179.72358 * 20 19 3 23 23 N 1.31614 * 119.99888 * 0.27479 * 22 20 19 24 24 Si 1.86803 * 119.99862 * 180.27671 * 22 20 19 25 25 H 1.48498 * 109.47174 * 90.00121 * 24 22 20 26 26 H 1.48501 * 109.47062 * 210.00072 * 24 22 20 27 27 H 1.48504 * 109.46913 * 329.99871 * 24 22 20 28 28 H 1.08998 * 109.47562 * 59.98997 * 1 2 3 29 29 H 1.08999 * 109.47396 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46888 * 299.98914 * 1 2 3 31 31 H 1.09005 * 109.46888 * 240.01086 * 2 1 3 32 32 H 1.08993 * 109.47875 * 120.00680 * 2 1 3 33 33 H 1.09005 * 109.47349 * 305.00426 * 5 3 2 34 34 H 1.09002 * 109.47351 * 65.00597 * 5 3 2 35 35 H 0.96998 * 119.99598 * 0.02562 * 6 5 3 36 36 H 1.07992 * 124.41160 * 180.08332 * 11 10 9 37 37 H 1.08001 * 122.45545 * 179.74858 * 12 11 10 38 38 H 1.08007 * 125.90312 * 0.03377 * 15 14 13 39 39 H 1.07998 * 126.26992 * 180.18458 * 16 15 14 40 40 H 1.07997 * 126.26339 * 179.71454 * 17 16 15 41 41 H 1.07999 * 125.90026 * 179.97438 * 18 17 16 42 42 H 0.97000 * 119.99792 * 94.99575 * 19 3 2 43 43 H 0.97005 * 119.99715 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9817 -0.8417 5 6 3.5647 1.4444 -0.1258 6 7 4.0630 2.8168 -0.0060 7 6 5.3855 3.0631 -0.0869 8 8 6.1665 2.1448 -0.2592 9 6 5.8826 4.4318 0.0332 10 16 4.8877 5.8610 0.2766 11 6 6.2594 6.8748 0.2898 12 6 7.3811 6.1712 0.1135 13 6 7.2014 4.8097 -0.0324 14 7 8.2537 3.9087 -0.2263 15 6 8.4603 2.7605 0.4842 16 6 9.5694 2.1622 0.0046 17 6 10.0724 2.9728 -1.0333 18 6 9.2490 4.0339 -1.1535 19 7 1.6525 2.0974 1.2520 20 6 0.4157 2.6733 1.3691 21 1 -0.2743 2.6445 0.5387 22 6 0.0465 3.2888 2.5573 23 7 0.8871 3.3235 3.5694 24 14 -1.6436 4.0677 2.7197 25 1 -2.6062 3.0596 3.2319 26 1 -1.5732 5.2103 3.6657 27 1 -2.0950 4.5526 1.3906 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5139 0.8898 33 1 3.9954 0.8311 0.6658 34 1 3.8498 1.0379 -1.0962 35 1 3.4410 3.5483 0.1316 36 1 6.2250 7.9465 0.4190 37 1 8.3569 6.6332 0.0872 38 1 7.8406 2.3936 1.2892 39 1 9.9965 1.2339 0.3541 40 1 10.9558 2.7797 -1.6236 41 1 9.3579 4.8431 -1.8604 42 1 2.2721 2.1229 1.9979 43 1 0.6292 3.7539 4.3996 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481837695.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:31 Heat of formation + Delta-G solvation = 65.569521 kcal Electronic energy + Delta-G solvation = -26054.772171 eV Core-core repulsion = 22421.226095 eV Total energy + Delta-G solvation = -3633.546077 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.41851 -39.36273 -37.68230 -36.65463 -33.80676 -32.43837 -31.88496 -30.05304 -29.53222 -28.61336 -27.62427 -24.94396 -23.72910 -22.67918 -21.32833 -20.93465 -20.21885 -20.10069 -18.96879 -18.56879 -17.28469 -17.11511 -15.83578 -15.48350 -15.28924 -14.84928 -14.75857 -14.30183 -14.04735 -13.86939 -13.58803 -13.27868 -13.20134 -13.06577 -12.96026 -12.55610 -12.43554 -12.19817 -12.14164 -11.87661 -11.48212 -11.16118 -11.01305 -10.94692 -10.77959 -10.48180 -10.24873 -10.07553 -9.84016 -9.58838 -9.41419 -9.04157 -9.01011 -8.69817 -8.13933 -7.91229 -7.09790 -5.86891 -3.16505 0.23178 1.21724 1.63339 1.88599 2.66412 3.09674 3.25210 3.27391 3.34841 3.38173 3.41654 3.43036 4.49000 4.67558 4.87809 4.98467 5.16794 5.32974 5.38119 5.41068 5.49341 5.50834 5.61680 5.72007 5.83470 5.85765 5.90289 5.91402 5.92232 6.10825 6.37388 6.41667 6.45481 6.47167 6.52193 6.56033 6.78130 6.97063 7.13226 7.20143 7.35715 7.59246 7.61374 7.74760 8.29902 8.36988 9.42186 9.96313 10.32553 11.34766 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013931 B = 0.003529 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.436237 B = 7932.076297 C = 9369.769752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.162 3.838 4 H 0.054 0.946 5 C 0.117 3.883 6 N -0.705 5.705 7 C 0.579 3.421 8 O -0.525 6.525 9 C -0.276 4.276 10 S 0.279 5.721 11 C -0.230 4.230 12 C -0.152 4.152 13 C 0.174 3.826 14 N -0.387 5.387 15 C 0.056 3.944 16 C -0.215 4.215 17 C -0.189 4.189 18 C -0.024 4.024 19 N -0.722 5.722 20 C -0.239 4.239 21 H 0.073 0.927 22 C -0.009 4.009 23 N -0.928 5.928 24 Si 0.902 3.098 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.282 1.282 28 H 0.040 0.960 29 H 0.033 0.967 30 H 0.085 0.915 31 H 0.043 0.957 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.407 0.593 36 H 0.177 0.823 37 H 0.149 0.851 38 H 0.158 0.842 39 H 0.135 0.865 40 H 0.134 0.866 41 H 0.157 0.843 42 H 0.385 0.615 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.276 5.113 -8.508 15.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C 0.052 3.948 4 H 0.072 0.928 5 C -0.008 4.008 6 N -0.356 5.356 7 C 0.365 3.635 8 O -0.404 6.404 9 C -0.398 4.398 10 S 0.547 5.453 11 C -0.369 4.369 12 C -0.184 4.184 13 C 0.067 3.933 14 N -0.061 5.061 15 C -0.072 4.072 16 C -0.239 4.239 17 C -0.214 4.214 18 C -0.150 4.150 19 N -0.364 5.364 20 C -0.370 4.370 21 H 0.091 0.909 22 C -0.206 4.206 23 N -0.576 5.576 24 Si 0.733 3.267 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.207 1.207 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.103 0.897 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.244 0.756 36 H 0.194 0.806 37 H 0.167 0.833 38 H 0.175 0.825 39 H 0.153 0.847 40 H 0.152 0.848 41 H 0.175 0.825 42 H 0.219 0.781 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.807 5.010 -8.454 14.607 hybrid contribution 0.437 0.614 0.388 0.847 sum 11.244 5.624 -8.066 14.937 Atomic orbital electron populations 1.21767 0.95666 0.99687 1.03242 1.22059 0.97012 0.98238 1.00099 1.20580 0.89731 0.92989 0.91501 0.92796 1.21729 0.95773 0.81846 1.01408 1.45857 1.06290 1.11238 1.72230 1.16731 0.82933 0.86099 0.77783 1.90886 1.55400 1.44325 1.49777 1.24763 0.96790 0.99729 1.18569 1.83664 1.05573 0.92509 1.63506 1.25161 0.97787 1.05815 1.08096 1.19689 1.00656 0.91471 1.06578 1.16932 0.85633 0.89351 1.01415 1.40885 1.18834 1.18147 1.28213 1.21787 0.98481 0.87211 0.99743 1.20814 0.99202 1.01956 1.01882 1.20849 1.01726 0.96467 1.02353 1.21752 0.91954 1.03082 0.98247 1.42467 1.16829 1.65890 1.11245 1.19203 0.91891 1.27960 0.97958 0.90874 1.24724 0.97973 1.01560 0.96314 1.69659 1.35069 1.48984 1.03881 0.86283 0.84310 0.78790 0.77354 1.21741 1.21827 1.20740 0.94112 0.94829 0.89659 0.93799 0.92460 0.91470 0.91550 0.75637 0.80597 0.83314 0.82482 0.84748 0.84776 0.82545 0.78099 0.93459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 9.18 37.16 0.34 -2.20 16 2 C -0.13 -2.24 5.61 -26.73 -0.15 -2.39 16 3 C 0.16 2.92 2.59 -67.93 -0.18 2.74 16 4 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 5 C 0.12 1.95 5.23 -4.04 -0.02 1.93 16 6 N -0.70 -11.80 5.38 -61.79 -0.33 -12.13 16 7 C 0.58 9.95 7.72 -13.11 -0.10 9.85 16 8 O -0.53 -10.13 13.02 5.13 0.07 -10.06 16 9 C -0.28 -4.11 6.43 -36.75 -0.24 -4.34 16 10 S 0.28 3.32 22.13 -107.50 -2.38 0.94 16 11 C -0.23 -2.23 10.90 29.10 0.32 -1.91 16 12 C -0.15 -1.67 9.97 -41.26 -0.41 -2.08 16 13 C 0.17 2.46 5.99 -84.56 -0.51 1.95 16 14 N -0.39 -5.78 2.65 -61.59 -0.16 -5.95 16 15 C 0.06 0.88 8.52 -16.63 -0.14 0.74 16 16 C -0.21 -3.12 10.86 -39.75 -0.43 -3.55 16 17 C -0.19 -2.51 10.86 -39.75 -0.43 -2.94 16 18 C -0.02 -0.32 11.24 -16.63 -0.19 -0.51 16 19 N -0.72 -15.96 4.51 -53.42 -0.24 -16.20 16 20 C -0.24 -5.88 7.75 -15.06 -0.12 -5.99 16 21 H 0.07 1.76 7.32 -52.49 -0.38 1.38 16 22 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 23 N -0.93 -25.94 13.06 55.49 0.72 -25.21 16 24 Si 0.90 20.90 29.55 -169.99 -5.02 15.87 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.08 1.75 5.99 -51.93 -0.31 1.44 16 31 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.41 6.87 7.24 -40.82 -0.30 6.57 16 36 H 0.18 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 38 H 0.16 2.56 7.43 -52.48 -0.39 2.17 16 39 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 40 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 41 H 0.16 1.63 8.06 -52.49 -0.42 1.21 16 42 H 0.38 9.36 7.80 -40.82 -0.32 9.04 16 43 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 371.29 15.07 5.60 5.60 Total: -1.00 -29.52 371.29 -10.01 -39.53 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: -5.90 Total: 16.67 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: -2.35 Total: -9.06 kcal Atomic # 7 Polarization: -59.47 SS G_CDS: -0.01 Total: -59.49 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.07 Total: -10.06 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 3.32 SS G_CDS: -2.38 Total: 0.94 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.52 -10.01 -39.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481837695.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.098 kcal (2) G-P(sol) polarization free energy of solvation -29.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds