Wall clock time and date at job start Tue Mar 31 2020 17:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47080 * 2 1 4 4 H 1.08994 * 109.47567 * 305.00833 * 3 2 1 5 5 C 1.52995 * 109.47104 * 185.00361 * 3 2 1 6 6 N 1.46500 * 109.47361 * 185.00342 * 5 3 2 7 7 C 1.34770 * 120.00423 * 180.02562 * 6 5 3 8 8 O 1.21770 * 119.99995 * 359.97438 * 7 6 5 9 9 C 1.46108 * 120.00529 * 180.02562 * 7 6 5 10 10 S 1.75823 * 125.47380 * 359.68956 * 9 7 6 11 11 C 1.70572 * 91.67512 * 179.91705 * 10 9 7 12 12 C 1.33582 * 111.17012 * 0.35919 * 11 10 9 13 13 C 1.37352 * 125.48329 * 180.02562 * 9 7 6 14 14 N 1.39882 * 123.48438 * 359.97438 * 13 9 7 15 15 C 1.36599 * 125.67097 * 309.68529 * 14 13 9 16 16 C 1.34837 * 108.20013 * 179.87048 * 15 14 13 17 17 C 1.40972 * 107.47153 * 0.39430 * 16 15 14 18 18 C 1.34843 * 107.47174 * 359.75568 * 17 16 15 19 19 N 1.46505 * 109.46692 * 65.00756 * 3 2 1 20 20 C 1.36931 * 119.99788 * 274.99780 * 19 3 2 21 21 H 1.08002 * 120.00438 * 0.02562 * 20 19 3 22 22 C 1.38817 * 119.99680 * 179.72358 * 20 19 3 23 23 N 1.31614 * 119.99888 * 0.27479 * 22 20 19 24 24 Si 1.86803 * 119.99862 * 180.27671 * 22 20 19 25 25 H 1.48498 * 109.47174 * 90.00121 * 24 22 20 26 26 H 1.48501 * 109.47062 * 210.00072 * 24 22 20 27 27 H 1.48504 * 109.46913 * 329.99871 * 24 22 20 28 28 H 1.08998 * 109.47562 * 59.98997 * 1 2 3 29 29 H 1.08999 * 109.47396 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46888 * 299.98914 * 1 2 3 31 31 H 1.09005 * 109.46888 * 240.01086 * 2 1 3 32 32 H 1.08993 * 109.47875 * 120.00680 * 2 1 3 33 33 H 1.09005 * 109.47349 * 305.00426 * 5 3 2 34 34 H 1.09002 * 109.47351 * 65.00597 * 5 3 2 35 35 H 0.96998 * 119.99598 * 0.02562 * 6 5 3 36 36 H 1.07992 * 124.41160 * 180.08332 * 11 10 9 37 37 H 1.08001 * 122.45545 * 179.74858 * 12 11 10 38 38 H 1.08007 * 125.90312 * 0.03377 * 15 14 13 39 39 H 1.07998 * 126.26992 * 180.18458 * 16 15 14 40 40 H 1.07997 * 126.26339 * 179.71454 * 17 16 15 41 41 H 1.07999 * 125.90026 * 179.97438 * 18 17 16 42 42 H 0.97000 * 119.99792 * 94.99575 * 19 3 2 43 43 H 0.97005 * 119.99715 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9817 -0.8417 5 6 3.5647 1.4444 -0.1258 6 7 4.0630 2.8168 -0.0060 7 6 5.3855 3.0631 -0.0869 8 8 6.1665 2.1448 -0.2592 9 6 5.8826 4.4318 0.0332 10 16 4.8877 5.8610 0.2766 11 6 6.2594 6.8748 0.2898 12 6 7.3811 6.1712 0.1135 13 6 7.2014 4.8097 -0.0324 14 7 8.2537 3.9087 -0.2263 15 6 8.4603 2.7605 0.4842 16 6 9.5694 2.1622 0.0046 17 6 10.0724 2.9728 -1.0333 18 6 9.2490 4.0339 -1.1535 19 7 1.6525 2.0974 1.2520 20 6 0.4157 2.6733 1.3691 21 1 -0.2743 2.6445 0.5387 22 6 0.0465 3.2888 2.5573 23 7 0.8871 3.3235 3.5694 24 14 -1.6436 4.0677 2.7197 25 1 -2.6062 3.0596 3.2319 26 1 -1.5732 5.2103 3.6657 27 1 -2.0950 4.5526 1.3906 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5139 0.8898 33 1 3.9954 0.8311 0.6658 34 1 3.8498 1.0379 -1.0962 35 1 3.4410 3.5483 0.1316 36 1 6.2250 7.9465 0.4190 37 1 8.3569 6.6332 0.0872 38 1 7.8406 2.3936 1.2892 39 1 9.9965 1.2339 0.3541 40 1 10.9558 2.7797 -1.6236 41 1 9.3579 4.8431 -1.8604 42 1 2.2721 2.1229 1.9979 43 1 0.6292 3.7539 4.3996 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481837695.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:30 Heat of formation + Delta-G solvation = 49.014811 kcal Electronic energy + Delta-G solvation = -26055.490038 eV Core-core repulsion = 22421.226095 eV Total energy + Delta-G solvation = -3634.263943 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -42.47981 -40.66117 -38.74244 -38.12143 -35.31028 -34.16912 -32.88018 -31.56777 -30.90803 -29.72842 -28.98235 -26.12147 -25.36083 -24.08447 -22.33586 -22.18218 -21.58209 -21.26630 -20.03468 -19.83989 -19.04562 -18.21803 -17.08820 -16.97183 -16.55122 -16.24363 -15.78345 -15.72398 -15.35071 -15.18560 -14.89533 -14.63872 -14.52957 -14.27718 -14.21739 -13.92405 -13.57485 -13.40363 -13.16518 -13.00721 -12.92205 -12.79776 -12.77308 -12.36299 -12.10480 -12.06226 -11.88689 -11.64754 -11.34313 -11.18332 -10.88265 -10.41816 -10.21859 -9.84107 -9.16241 -9.00534 -8.98035 -7.86321 -5.14031 -0.77812 0.24540 0.73726 0.96275 1.50805 1.53036 1.58882 1.59432 2.00550 2.07080 2.13836 2.17811 2.60581 3.47082 3.68839 3.86795 3.91479 3.92030 4.00434 4.28780 4.34568 4.35127 4.45858 4.52959 4.54211 4.66757 4.70424 4.77169 4.85507 4.92304 4.99283 5.06752 5.10197 5.19558 5.35960 5.38335 5.40931 5.54047 5.62264 5.71620 6.07344 6.27600 6.33046 6.41523 6.54627 7.05465 7.41305 8.11217 8.37273 9.36341 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013931 B = 0.003529 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.436237 B = 7932.076297 C = 9369.769752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.129 4.129 3 C 0.165 3.835 4 H 0.059 0.941 5 C 0.125 3.875 6 N -0.706 5.706 7 C 0.576 3.424 8 O -0.555 6.555 9 C -0.317 4.317 10 S 0.280 5.720 11 C -0.198 4.198 12 C -0.160 4.160 13 C 0.170 3.830 14 N -0.395 5.395 15 C 0.026 3.974 16 C -0.221 4.221 17 C -0.198 4.198 18 C -0.024 4.024 19 N -0.728 5.728 20 C -0.218 4.218 21 H 0.080 0.920 22 C -0.068 4.068 23 N -0.966 5.966 24 Si 0.957 3.043 25 H -0.297 1.297 26 H -0.301 1.301 27 H -0.268 1.268 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.049 0.951 31 H 0.074 0.926 32 H 0.045 0.955 33 H 0.053 0.947 34 H 0.080 0.920 35 H 0.406 0.594 36 H 0.217 0.783 37 H 0.174 0.826 38 H 0.138 0.862 39 H 0.145 0.855 40 H 0.160 0.840 41 H 0.187 0.813 42 H 0.372 0.628 43 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.754 6.589 -10.456 17.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C 0.056 3.944 4 H 0.077 0.923 5 C 0.001 3.999 6 N -0.357 5.357 7 C 0.363 3.637 8 O -0.436 6.436 9 C -0.439 4.439 10 S 0.549 5.451 11 C -0.336 4.336 12 C -0.190 4.190 13 C 0.061 3.939 14 N -0.069 5.069 15 C -0.102 4.102 16 C -0.245 4.245 17 C -0.222 4.222 18 C -0.150 4.150 19 N -0.368 5.368 20 C -0.350 4.350 21 H 0.098 0.902 22 C -0.261 4.261 23 N -0.617 5.617 24 Si 0.788 3.212 25 H -0.224 1.224 26 H -0.228 1.228 27 H -0.193 1.193 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.098 0.902 35 H 0.242 0.758 36 H 0.234 0.766 37 H 0.192 0.808 38 H 0.156 0.844 39 H 0.162 0.838 40 H 0.178 0.822 41 H 0.205 0.795 42 H 0.204 0.796 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 11.267 6.475 -10.455 16.678 hybrid contribution 0.343 0.137 0.914 0.986 sum 11.610 6.612 -9.541 16.418 Atomic orbital electron populations 1.21693 0.95792 1.00630 1.01862 1.21981 0.96773 0.97177 1.01038 1.20711 0.90520 0.93485 0.89664 0.92259 1.21613 0.94674 0.82034 1.01597 1.45840 1.06402 1.11038 1.72371 1.17075 0.82582 0.87060 0.76953 1.90858 1.55891 1.45619 1.51214 1.24635 0.97921 0.99549 1.21789 1.83663 1.06336 0.91778 1.63359 1.25621 0.96002 1.07234 1.04774 1.19885 1.02247 0.90012 1.06893 1.17400 0.85168 0.90573 1.00714 1.41058 1.19360 1.18041 1.28431 1.21693 0.99301 0.88653 1.00599 1.21117 0.98877 1.02406 1.02141 1.21205 1.02683 0.96165 1.02190 1.22340 0.91015 1.03781 0.97823 1.42575 1.15898 1.66151 1.12217 1.19488 0.92356 1.25642 0.97505 0.90174 1.25339 1.00785 1.03409 0.96546 1.69806 1.36661 1.51011 1.04196 0.85381 0.80960 0.77435 0.77441 1.22444 1.22810 1.19278 0.93113 0.92867 0.93190 0.90737 0.93597 0.92820 0.90165 0.75751 0.76616 0.80824 0.84418 0.83762 0.82221 0.79549 0.79611 0.94408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.73 9.18 71.98 0.66 -4.07 16 2 C -0.13 -4.18 5.61 30.59 0.17 -4.01 16 3 C 0.16 5.84 2.59 44.99 0.12 5.96 16 4 H 0.06 2.07 8.08 -2.39 -0.02 2.05 16 5 C 0.12 4.20 5.23 86.38 0.45 4.65 16 6 N -0.71 -24.12 5.38 -467.61 -2.52 -26.64 16 7 C 0.58 20.38 7.72 86.29 0.67 21.05 16 8 O -0.55 -22.25 13.02 -4.57 -0.06 -22.31 16 9 C -0.32 -9.47 6.43 24.10 0.15 -9.31 16 10 S 0.28 6.36 22.13 -56.49 -1.25 5.10 16 11 C -0.20 -3.20 10.90 66.76 0.73 -2.47 16 12 C -0.16 -3.10 9.97 21.18 0.21 -2.89 16 13 C 0.17 4.67 5.99 37.61 0.23 4.89 16 14 N -0.39 -11.66 2.65 -348.78 -0.93 -12.59 16 15 C 0.03 0.84 8.52 83.17 0.71 1.55 16 16 C -0.22 -6.46 10.86 22.16 0.24 -6.22 16 17 C -0.20 -4.98 10.86 22.16 0.24 -4.74 16 18 C -0.02 -0.59 11.24 83.17 0.94 0.34 16 19 N -0.73 -32.46 4.51 -322.93 -1.46 -33.91 16 20 C -0.22 -10.70 7.75 84.04 0.65 -10.05 16 21 H 0.08 3.78 7.32 -2.91 -0.02 3.76 16 22 C -0.07 -3.61 5.50 84.86 0.47 -3.14 16 23 N -0.97 -55.31 13.06 21.65 0.28 -55.03 16 24 Si 0.96 43.28 29.55 68.60 2.03 45.31 16 25 H -0.30 -13.59 7.11 99.48 0.71 -12.88 16 26 H -0.30 -13.95 7.11 99.48 0.71 -13.25 16 27 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 28 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.05 2.02 5.99 -2.38 -0.01 2.00 16 31 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 32 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 34 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.41 13.95 7.24 -92.71 -0.67 13.28 16 36 H 0.22 1.73 8.06 -2.91 -0.02 1.70 16 37 H 0.17 2.48 8.06 -2.91 -0.02 2.46 16 38 H 0.14 4.89 7.43 -2.91 -0.02 4.87 16 39 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 40 H 0.16 3.05 8.06 -2.91 -0.02 3.03 16 41 H 0.19 3.31 8.06 -2.91 -0.02 3.29 16 42 H 0.37 18.60 7.80 -92.71 -0.72 17.88 16 43 H 0.25 14.00 8.31 -92.70 -0.77 13.23 16 Total: -1.00 -65.44 371.29 2.38 -63.06 By element: Atomic # 1 Polarization: 45.80 SS G_CDS: -0.35 Total: 45.45 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: 6.63 Total: -8.46 kcal Atomic # 7 Polarization: -123.55 SS G_CDS: -4.62 Total: -128.16 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -0.06 Total: -22.31 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: 6.36 SS G_CDS: -1.25 Total: 5.10 kcal Total: -65.44 2.38 -63.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481837695.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.078 kcal (2) G-P(sol) polarization free energy of solvation -65.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds