Wall clock time and date at job start Tue Mar 31 2020 17:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46987 * 2 1 4 4 H 1.08998 * 109.46454 * 55.00588 * 3 2 1 5 5 C 1.52997 * 109.46922 * 175.00156 * 3 2 1 6 6 N 1.46497 * 109.47148 * 175.00420 * 5 3 2 7 7 C 1.34775 * 120.00205 * 180.02562 * 6 5 3 8 8 O 1.21762 * 120.00082 * 359.97438 * 7 6 5 9 9 C 1.46111 * 120.00057 * 179.97438 * 7 6 5 10 10 S 1.75821 * 125.47698 * 0.12319 * 9 7 6 11 11 C 1.70580 * 91.67391 * 180.22686 * 10 9 7 12 12 C 1.33584 * 111.17069 * 359.80299 * 11 10 9 13 13 C 1.37353 * 125.47863 * 179.97438 * 9 7 6 14 14 N 1.39885 * 123.48827 * 359.97438 * 13 9 7 15 15 C 1.36603 * 125.66869 * 309.42275 * 14 13 9 16 16 C 1.34845 * 108.19496 * 179.89045 * 15 14 13 17 17 C 1.40961 * 107.47121 * 0.36447 * 16 15 14 18 18 C 1.34837 * 107.47838 * 359.77046 * 17 16 15 19 19 N 1.46493 * 109.47238 * 295.00600 * 3 2 1 20 20 C 1.36943 * 120.00190 * 85.00022 * 19 3 2 21 21 H 1.07997 * 119.99909 * 359.97438 * 20 19 3 22 22 C 1.38813 * 119.99996 * 179.97438 * 20 19 3 23 23 N 1.31613 * 119.99562 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 120.00063 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.47070 * 89.99891 * 24 22 20 26 26 H 1.48494 * 109.47317 * 210.00143 * 24 22 20 27 27 H 1.48502 * 109.47150 * 330.00059 * 24 22 20 28 28 H 1.08999 * 109.47132 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46824 * 299.98955 * 1 2 3 30 30 H 1.08995 * 109.47339 * 59.99272 * 1 2 3 31 31 H 1.09000 * 109.46434 * 240.00676 * 2 1 3 32 32 H 1.08995 * 109.47339 * 120.00728 * 2 1 3 33 33 H 1.09003 * 109.46688 * 55.00600 * 5 3 2 34 34 H 1.09007 * 109.47300 * 295.00681 * 5 3 2 35 35 H 0.97001 * 120.00087 * 359.97438 * 6 5 3 36 36 H 1.07994 * 124.41451 * 179.82982 * 11 10 9 37 37 H 1.08003 * 122.45400 * 180.02562 * 12 11 10 38 38 H 1.08000 * 125.90329 * 0.02704 * 15 14 13 39 39 H 1.07999 * 126.26029 * 180.13908 * 16 15 14 40 40 H 1.08001 * 126.26099 * 179.77126 * 17 16 15 41 41 H 1.08004 * 125.90030 * 179.97438 * 18 17 16 42 42 H 0.97001 * 119.99690 * 264.99331 * 19 3 2 43 43 H 0.97003 * 119.99874 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9814 0.8419 5 6 3.5648 1.4444 0.1257 6 7 4.0630 2.8168 0.0060 7 6 5.3857 3.0630 0.0859 8 8 6.1666 2.1447 0.2579 9 6 5.8826 4.4317 -0.0341 10 16 4.8880 5.8605 -0.2805 11 6 6.2598 6.8742 -0.2957 12 6 7.3817 6.1703 -0.1213 13 6 7.2016 4.8095 0.0305 14 7 8.2540 3.9085 0.2240 15 6 8.3223 2.9629 1.2074 16 6 9.4825 2.2906 1.0652 17 6 10.1600 2.8447 -0.0398 18 6 9.3867 3.8318 -0.5355 19 7 1.6523 2.0976 -1.2517 20 6 0.4154 2.6736 -1.3686 21 1 -0.2744 2.6446 -0.5381 22 6 0.0483 3.2947 -2.5545 23 7 -1.1406 3.8478 -2.6669 24 14 1.2418 3.3454 -3.9906 25 1 1.0394 2.1478 -4.8449 26 1 0.9999 4.5719 -4.7922 27 1 2.6349 3.3570 -3.4764 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8932 -0.5137 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.9953 0.8312 -0.6661 34 1 3.8499 1.0376 1.0960 35 1 3.4410 3.5483 -0.1314 36 1 6.2258 7.9454 -0.4284 37 1 8.3580 6.6317 -0.1001 38 1 7.5751 2.7831 1.9662 39 1 9.8307 1.4789 1.6867 40 1 11.1224 2.5351 -0.4198 41 1 9.6226 4.4545 -1.3858 42 1 2.2718 2.1233 -1.9976 43 1 -1.3971 4.2822 -3.4954 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481837701.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:34 Heat of formation + Delta-G solvation = 69.622926 kcal Electronic energy + Delta-G solvation = -26161.299726 eV Core-core repulsion = 22527.929418 eV Total energy + Delta-G solvation = -3633.370308 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.50879 -39.49693 -37.79411 -36.83008 -33.93052 -32.42560 -31.97647 -30.38079 -29.87268 -28.71834 -27.82281 -25.03457 -23.59454 -22.56428 -21.41615 -21.04844 -20.31534 -20.23157 -19.07146 -18.79770 -17.55611 -17.24156 -15.94774 -15.63547 -15.42309 -14.96625 -14.84528 -14.36835 -14.17671 -13.94783 -13.61524 -13.33675 -13.27252 -13.12768 -12.96300 -12.73030 -12.53133 -12.45342 -12.23874 -11.96250 -11.62747 -11.27226 -11.22063 -11.04322 -10.76637 -10.46525 -10.36424 -10.07202 -9.95540 -9.55294 -9.50694 -9.15050 -9.04782 -8.84229 -8.23773 -7.99666 -7.41719 -5.87900 -3.24283 0.12331 1.10731 1.52773 1.79098 2.57231 3.00674 3.12675 3.17447 3.25437 3.27967 3.32897 3.38749 4.48635 4.57703 4.78013 4.86876 5.09207 5.12967 5.21041 5.31323 5.37636 5.39623 5.52928 5.63233 5.70069 5.74570 5.81416 5.82415 5.85385 5.99388 6.21646 6.33788 6.36802 6.38727 6.45730 6.53487 6.67216 6.88456 7.04914 7.24901 7.27086 7.50246 7.59889 7.87596 8.22936 8.30334 9.07876 9.80409 9.99554 11.29613 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013046 B = 0.003850 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.694174 B = 7270.310957 C = 8505.791977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 C 0.168 3.832 4 H 0.063 0.937 5 C 0.113 3.887 6 N -0.710 5.710 7 C 0.580 3.420 8 O -0.522 6.522 9 C -0.279 4.279 10 S 0.273 5.727 11 C -0.226 4.226 12 C -0.152 4.152 13 C 0.177 3.823 14 N -0.387 5.387 15 C 0.053 3.947 16 C -0.213 4.213 17 C -0.188 4.188 18 C -0.022 4.022 19 N -0.748 5.748 20 C -0.244 4.244 21 H 0.096 0.904 22 C 0.010 3.990 23 N -0.929 5.929 24 Si 0.876 3.124 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.278 1.278 28 H 0.033 0.967 29 H 0.042 0.958 30 H 0.088 0.912 31 H 0.055 0.945 32 H 0.047 0.953 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.406 0.594 36 H 0.178 0.822 37 H 0.151 0.849 38 H 0.157 0.843 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.158 0.842 42 H 0.362 0.638 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.829 3.935 7.250 18.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C 0.058 3.942 4 H 0.081 0.919 5 C -0.011 4.011 6 N -0.361 5.361 7 C 0.365 3.635 8 O -0.401 6.401 9 C -0.402 4.402 10 S 0.541 5.459 11 C -0.365 4.365 12 C -0.184 4.184 13 C 0.070 3.930 14 N -0.062 5.062 15 C -0.075 4.075 16 C -0.237 4.237 17 C -0.213 4.213 18 C -0.148 4.148 19 N -0.391 5.391 20 C -0.373 4.373 21 H 0.113 0.887 22 C -0.186 4.186 23 N -0.576 5.576 24 Si 0.706 3.294 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.204 1.204 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.107 0.893 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.243 0.757 36 H 0.195 0.805 37 H 0.168 0.832 38 H 0.174 0.826 39 H 0.153 0.847 40 H 0.153 0.847 41 H 0.175 0.825 42 H 0.195 0.805 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 15.290 3.842 7.210 17.335 hybrid contribution 1.973 0.269 -1.263 2.358 sum 17.263 4.110 5.947 18.715 Atomic orbital electron populations 1.21779 0.95123 0.99776 1.03789 1.22029 0.97411 0.97656 1.00195 1.20561 0.89616 0.93193 0.90834 0.91868 1.21789 0.95704 0.81796 1.01781 1.45900 1.06344 1.11256 1.72620 1.16738 0.82851 0.86168 0.77760 1.90892 1.55328 1.44297 1.49543 1.24748 0.97310 0.99465 1.18658 1.83668 1.05781 0.92808 1.63638 1.25168 0.97600 1.05868 1.07822 1.19715 1.00747 0.91156 1.06758 1.16944 0.85833 0.89072 1.01196 1.40892 1.13735 1.26876 1.24666 1.21736 0.98997 0.92257 0.94502 1.20817 0.96632 1.03980 1.02240 1.20859 1.00900 0.99729 0.99842 1.21781 0.87948 1.04688 1.00426 1.42853 1.16885 1.67697 1.11699 1.19054 0.90566 1.27777 0.99941 0.88655 1.24633 0.96295 1.00275 0.97416 1.69684 1.19216 1.41975 1.26764 0.86698 0.81155 0.77496 0.84040 1.21079 1.21714 1.20375 0.94802 0.93856 0.89336 0.92609 0.93473 0.91543 0.91035 0.75709 0.80460 0.83186 0.82581 0.84716 0.84700 0.82482 0.80532 0.92979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.18 37.16 0.34 -2.23 16 2 C -0.13 -2.13 5.61 -26.73 -0.15 -2.28 16 3 C 0.17 2.88 2.59 -67.93 -0.18 2.70 16 4 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 5 C 0.11 1.78 5.23 -4.04 -0.02 1.76 16 6 N -0.71 -11.26 5.38 -61.79 -0.33 -11.59 16 7 C 0.58 9.48 7.72 -13.10 -0.10 9.37 16 8 O -0.52 -9.63 13.05 5.13 0.07 -9.56 16 9 C -0.28 -3.96 6.43 -36.75 -0.24 -4.20 16 10 S 0.27 3.09 22.13 -107.50 -2.38 0.71 16 11 C -0.23 -2.06 10.90 29.10 0.32 -1.74 16 12 C -0.15 -1.57 9.97 -41.26 -0.41 -1.99 16 13 C 0.18 2.38 5.99 -84.55 -0.51 1.87 16 14 N -0.39 -5.54 2.65 -61.59 -0.16 -5.71 16 15 C 0.05 0.78 8.53 -16.63 -0.14 0.64 16 16 C -0.21 -2.92 10.86 -39.75 -0.43 -3.36 16 17 C -0.19 -2.42 10.86 -39.76 -0.43 -2.86 16 18 C -0.02 -0.29 11.24 -16.63 -0.19 -0.48 16 19 N -0.75 -15.67 4.31 -53.43 -0.23 -15.90 16 20 C -0.24 -6.10 8.24 -15.06 -0.12 -6.22 16 21 H 0.10 2.56 7.55 -52.49 -0.40 2.17 16 22 C 0.01 0.27 5.50 -17.43 -0.10 0.18 16 23 N -0.93 -27.27 13.97 55.49 0.78 -26.50 16 24 Si 0.88 20.89 27.73 -169.99 -4.71 16.18 16 25 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 27 H -0.28 -6.26 6.52 56.52 0.37 -5.89 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.09 1.87 5.99 -51.93 -0.31 1.56 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.41 6.47 7.24 -40.82 -0.30 6.17 16 36 H 0.18 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.15 1.26 8.06 -52.48 -0.42 0.84 16 38 H 0.16 2.27 7.45 -52.49 -0.39 1.88 16 39 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 40 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 41 H 0.16 1.63 8.06 -52.48 -0.42 1.21 16 42 H 0.36 7.79 5.66 -40.82 -0.23 7.56 16 43 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 368.23 15.07 5.55 5.55 Total: -1.00 -30.79 368.23 -9.65 -40.43 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: -5.86 Total: 15.22 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -2.36 Total: -8.83 kcal Atomic # 7 Polarization: -59.75 SS G_CDS: 0.05 Total: -59.70 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.07 Total: -9.56 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.71 Total: 16.18 kcal Atomic # 16 Polarization: 3.09 SS G_CDS: -2.38 Total: 0.71 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.79 -9.65 -40.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481837701.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.057 kcal (2) G-P(sol) polarization free energy of solvation -30.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds