Wall clock time and date at job start Tue Mar 31 2020 17:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46987 * 2 1 4 4 H 1.08998 * 109.46454 * 55.00588 * 3 2 1 5 5 C 1.52997 * 109.46922 * 175.00156 * 3 2 1 6 6 N 1.46497 * 109.47148 * 175.00420 * 5 3 2 7 7 C 1.34775 * 120.00205 * 180.02562 * 6 5 3 8 8 O 1.21762 * 120.00082 * 359.97438 * 7 6 5 9 9 C 1.46111 * 120.00057 * 179.97438 * 7 6 5 10 10 S 1.75821 * 125.47698 * 0.12319 * 9 7 6 11 11 C 1.70580 * 91.67391 * 180.22686 * 10 9 7 12 12 C 1.33584 * 111.17069 * 359.80299 * 11 10 9 13 13 C 1.37353 * 125.47863 * 179.97438 * 9 7 6 14 14 N 1.39885 * 123.48827 * 359.97438 * 13 9 7 15 15 C 1.36603 * 125.66869 * 309.42275 * 14 13 9 16 16 C 1.34845 * 108.19496 * 179.89045 * 15 14 13 17 17 C 1.40961 * 107.47121 * 0.36447 * 16 15 14 18 18 C 1.34837 * 107.47838 * 359.77046 * 17 16 15 19 19 N 1.46493 * 109.47238 * 295.00600 * 3 2 1 20 20 C 1.36943 * 120.00190 * 85.00022 * 19 3 2 21 21 H 1.07997 * 119.99909 * 359.97438 * 20 19 3 22 22 C 1.38813 * 119.99996 * 179.97438 * 20 19 3 23 23 N 1.31613 * 119.99562 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 120.00063 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.47070 * 89.99891 * 24 22 20 26 26 H 1.48494 * 109.47317 * 210.00143 * 24 22 20 27 27 H 1.48502 * 109.47150 * 330.00059 * 24 22 20 28 28 H 1.08999 * 109.47132 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46824 * 299.98955 * 1 2 3 30 30 H 1.08995 * 109.47339 * 59.99272 * 1 2 3 31 31 H 1.09000 * 109.46434 * 240.00676 * 2 1 3 32 32 H 1.08995 * 109.47339 * 120.00728 * 2 1 3 33 33 H 1.09003 * 109.46688 * 55.00600 * 5 3 2 34 34 H 1.09007 * 109.47300 * 295.00681 * 5 3 2 35 35 H 0.97001 * 120.00087 * 359.97438 * 6 5 3 36 36 H 1.07994 * 124.41451 * 179.82982 * 11 10 9 37 37 H 1.08003 * 122.45400 * 180.02562 * 12 11 10 38 38 H 1.08000 * 125.90329 * 0.02704 * 15 14 13 39 39 H 1.07999 * 126.26029 * 180.13908 * 16 15 14 40 40 H 1.08001 * 126.26099 * 179.77126 * 17 16 15 41 41 H 1.08004 * 125.90030 * 179.97438 * 18 17 16 42 42 H 0.97001 * 119.99690 * 264.99331 * 19 3 2 43 43 H 0.97003 * 119.99874 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9814 0.8419 5 6 3.5648 1.4444 0.1257 6 7 4.0630 2.8168 0.0060 7 6 5.3857 3.0630 0.0859 8 8 6.1666 2.1447 0.2579 9 6 5.8826 4.4317 -0.0341 10 16 4.8880 5.8605 -0.2805 11 6 6.2598 6.8742 -0.2957 12 6 7.3817 6.1703 -0.1213 13 6 7.2016 4.8095 0.0305 14 7 8.2540 3.9085 0.2240 15 6 8.3223 2.9629 1.2074 16 6 9.4825 2.2906 1.0652 17 6 10.1600 2.8447 -0.0398 18 6 9.3867 3.8318 -0.5355 19 7 1.6523 2.0976 -1.2517 20 6 0.4154 2.6736 -1.3686 21 1 -0.2744 2.6446 -0.5381 22 6 0.0483 3.2947 -2.5545 23 7 -1.1406 3.8478 -2.6669 24 14 1.2418 3.3454 -3.9906 25 1 1.0394 2.1478 -4.8449 26 1 0.9999 4.5719 -4.7922 27 1 2.6349 3.3570 -3.4764 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8932 -0.5137 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.9953 0.8312 -0.6661 34 1 3.8499 1.0376 1.0960 35 1 3.4410 3.5483 -0.1314 36 1 6.2258 7.9454 -0.4284 37 1 8.3580 6.6317 -0.1001 38 1 7.5751 2.7831 1.9662 39 1 9.8307 1.4789 1.6867 40 1 11.1224 2.5351 -0.4198 41 1 9.6226 4.4545 -1.3858 42 1 2.2718 2.1233 -1.9976 43 1 -1.3971 4.2822 -3.4954 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481837701.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:34 Heat of formation + Delta-G solvation = 51.563554 kcal Electronic energy + Delta-G solvation = -26162.082839 eV Core-core repulsion = 22527.929418 eV Total energy + Delta-G solvation = -3634.153421 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.50031 -40.71512 -38.81185 -38.23129 -35.36856 -34.20271 -32.90658 -32.10076 -31.04374 -29.76695 -29.09107 -26.10795 -25.15561 -24.03813 -22.36510 -22.21707 -21.73219 -21.28043 -20.18698 -19.98562 -19.25576 -18.25798 -17.17956 -17.02714 -16.61879 -16.27843 -15.93002 -15.69519 -15.41625 -15.08882 -14.80380 -14.72529 -14.58531 -14.43349 -14.25807 -14.23974 -13.67149 -13.42420 -13.18859 -13.12573 -12.99707 -12.90176 -12.86963 -12.34072 -12.13572 -12.11693 -11.91221 -11.61997 -11.42756 -11.23477 -10.94738 -10.44575 -10.26448 -9.88601 -9.31370 -9.19530 -9.01983 -7.96045 -5.28315 -0.81671 0.20227 0.69591 0.93252 1.37149 1.40658 1.45854 1.55941 1.97589 2.01643 2.10687 2.16762 2.50280 3.35811 3.53264 3.66624 3.83106 3.88687 3.97412 4.26110 4.27865 4.33832 4.41701 4.50933 4.52684 4.65153 4.68085 4.75142 4.79353 4.89628 4.96433 5.04071 5.07586 5.17962 5.34221 5.35627 5.38556 5.49859 5.72075 5.86633 6.05676 6.26111 6.26638 6.36086 6.52005 7.00445 7.11761 7.86059 8.04585 9.24911 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013046 B = 0.003850 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.694174 B = 7270.310957 C = 8505.791977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.127 4.127 3 C 0.168 3.832 4 H 0.062 0.938 5 C 0.122 3.878 6 N -0.712 5.712 7 C 0.578 3.422 8 O -0.551 6.551 9 C -0.317 4.317 10 S 0.272 5.728 11 C -0.195 4.195 12 C -0.160 4.160 13 C 0.173 3.827 14 N -0.396 5.396 15 C 0.029 3.971 16 C -0.222 4.222 17 C -0.198 4.198 18 C -0.028 4.028 19 N -0.747 5.747 20 C -0.206 4.206 21 H 0.072 0.928 22 C -0.053 4.053 23 N -0.980 5.980 24 Si 0.933 3.067 25 H -0.291 1.291 26 H -0.298 1.298 27 H -0.257 1.257 28 H 0.053 0.947 29 H 0.043 0.957 30 H 0.046 0.954 31 H 0.054 0.946 32 H 0.080 0.920 33 H 0.060 0.940 34 H 0.088 0.912 35 H 0.406 0.594 36 H 0.217 0.783 37 H 0.174 0.826 38 H 0.147 0.853 39 H 0.147 0.853 40 H 0.158 0.842 41 H 0.183 0.817 42 H 0.361 0.639 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.179 4.590 7.349 21.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.168 4.168 3 C 0.060 3.940 4 H 0.080 0.920 5 C -0.002 4.002 6 N -0.363 5.363 7 C 0.365 3.635 8 O -0.431 6.431 9 C -0.439 4.439 10 S 0.540 5.460 11 C -0.333 4.333 12 C -0.190 4.190 13 C 0.064 3.936 14 N -0.070 5.070 15 C -0.099 4.099 16 C -0.246 4.246 17 C -0.223 4.223 18 C -0.154 4.154 19 N -0.391 5.391 20 C -0.337 4.337 21 H 0.089 0.911 22 C -0.245 4.245 23 N -0.631 5.631 24 Si 0.763 3.237 25 H -0.218 1.218 26 H -0.225 1.225 27 H -0.182 1.182 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.079 0.921 34 H 0.106 0.894 35 H 0.242 0.758 36 H 0.234 0.766 37 H 0.191 0.809 38 H 0.164 0.836 39 H 0.164 0.836 40 H 0.175 0.825 41 H 0.200 0.800 42 H 0.194 0.806 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 17.679 4.472 7.343 19.659 hybrid contribution 1.261 0.048 -1.167 1.719 sum 18.940 4.521 6.176 20.428 Atomic orbital electron populations 1.21689 0.96191 1.00488 1.01684 1.21955 0.96257 0.96791 1.01757 1.20706 0.90822 0.93582 0.88874 0.92008 1.21682 0.94050 0.81995 1.02455 1.45903 1.06447 1.11152 1.72770 1.17033 0.82513 0.87015 0.76946 1.90867 1.55824 1.45506 1.50916 1.24625 0.98295 0.99345 1.21671 1.83687 1.06531 0.92186 1.63554 1.25609 0.95860 1.07232 1.04621 1.19905 1.02263 0.89799 1.07050 1.17391 0.85427 0.90238 1.00526 1.41070 1.14270 1.26999 1.24680 1.21759 0.99428 0.93434 0.95239 1.21128 0.96538 1.04136 1.02770 1.21205 1.01858 0.99680 0.99535 1.22299 0.87398 1.04922 1.00739 1.42844 1.15386 1.67730 1.13152 1.18966 0.91097 1.25167 0.98469 0.91056 1.25209 0.97727 1.01503 1.00037 1.69834 1.21460 1.44537 1.27248 0.85744 0.80385 0.76564 0.81025 1.21820 1.22532 1.18156 0.92769 0.93781 0.93471 0.92707 0.90189 0.92126 0.89407 0.75795 0.76648 0.80863 0.83558 0.83567 0.82489 0.80014 0.80569 0.93624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.87 9.18 71.98 0.66 -4.21 16 2 C -0.13 -3.86 5.61 30.60 0.17 -3.69 16 3 C 0.17 5.58 2.59 44.99 0.12 5.70 16 4 H 0.06 2.10 8.08 -2.39 -0.02 2.08 16 5 C 0.12 3.67 5.23 86.38 0.45 4.12 16 6 N -0.71 -22.07 5.38 -467.61 -2.52 -24.59 16 7 C 0.58 18.69 7.72 86.29 0.67 19.35 16 8 O -0.55 -20.32 13.05 -4.55 -0.06 -20.38 16 9 C -0.32 -8.71 6.43 24.11 0.15 -8.55 16 10 S 0.27 5.66 22.13 -56.49 -1.25 4.41 16 11 C -0.19 -2.84 10.90 66.76 0.73 -2.12 16 12 C -0.16 -2.83 9.97 21.18 0.21 -2.62 16 13 C 0.17 4.39 5.99 37.62 0.23 4.61 16 14 N -0.40 -10.91 2.65 -348.77 -0.92 -11.84 16 15 C 0.03 0.86 8.53 83.17 0.71 1.57 16 16 C -0.22 -5.96 10.86 22.16 0.24 -5.72 16 17 C -0.20 -4.78 10.86 22.16 0.24 -4.54 16 18 C -0.03 -0.67 11.24 83.17 0.94 0.26 16 19 N -0.75 -30.84 4.31 -322.95 -1.39 -32.23 16 20 C -0.21 -10.40 8.24 84.03 0.69 -9.71 16 21 H 0.07 3.93 7.55 -2.91 -0.02 3.91 16 22 C -0.05 -2.90 5.50 84.86 0.47 -2.43 16 23 N -0.98 -59.12 13.97 21.65 0.30 -58.82 16 24 Si 0.93 43.43 27.73 68.60 1.90 45.34 16 25 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 26 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 27 H -0.26 -10.87 6.52 99.48 0.65 -10.23 16 28 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.05 1.99 5.99 -2.39 -0.01 1.98 16 31 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.09 2.38 8.14 -2.38 -0.02 2.36 16 35 H 0.41 12.65 7.24 -92.71 -0.67 11.97 16 36 H 0.22 1.45 8.06 -2.91 -0.02 1.43 16 37 H 0.17 2.24 8.06 -2.91 -0.02 2.22 16 38 H 0.15 4.43 7.45 -2.91 -0.02 4.40 16 39 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 40 H 0.16 2.93 8.06 -2.91 -0.02 2.90 16 41 H 0.18 3.27 8.06 -2.91 -0.02 3.25 16 42 H 0.36 15.12 5.66 -92.71 -0.52 14.59 16 43 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -68.27 368.23 2.52 -65.75 By element: Atomic # 1 Polarization: 40.55 SS G_CDS: -0.22 Total: 40.34 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: 6.67 Total: -7.98 kcal Atomic # 7 Polarization: -122.95 SS G_CDS: -4.53 Total: -127.48 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -0.06 Total: -20.38 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 1.90 Total: 45.34 kcal Atomic # 16 Polarization: 5.66 SS G_CDS: -1.25 Total: 4.41 kcal Total: -68.27 2.52 -65.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481837701.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.314 kcal (2) G-P(sol) polarization free energy of solvation -68.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds