Wall clock time and date at job start Tue Mar 31 2020 18:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47114 * 2 1 4 4 C 1.52998 * 109.47040 * 119.99421 * 2 1 3 5 5 C 1.53003 * 109.47153 * 185.00180 * 4 2 1 6 6 N 1.46507 * 109.47023 * 180.02562 * 5 4 2 7 7 C 1.36942 * 119.99854 * 179.97438 * 6 5 4 8 8 H 1.07996 * 119.99849 * 0.02562 * 7 6 5 9 9 C 1.38809 * 119.99732 * 179.97438 * 7 6 5 10 10 N 1.31615 * 120.00126 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99524 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47169 * 90.00204 * 11 9 7 13 13 H 1.48502 * 109.46746 * 209.99982 * 11 9 7 14 14 H 1.48500 * 109.47351 * 329.99612 * 11 9 7 15 15 N 1.46503 * 109.47461 * 239.99744 * 2 1 3 16 16 C 1.34776 * 119.99644 * 85.00048 * 15 2 1 17 17 O 1.21753 * 120.00587 * 359.97438 * 16 15 2 18 18 C 1.46112 * 119.99411 * 180.02562 * 16 15 2 19 19 S 1.75809 * 125.48133 * 359.97438 * 18 16 15 20 20 C 1.70566 * 91.67714 * 180.02562 * 19 18 16 21 21 C 1.33583 * 111.17407 * 359.74963 * 20 19 18 22 22 C 1.37355 * 125.47669 * 179.97438 * 18 16 15 23 23 N 1.39885 * 123.48562 * 359.95414 * 22 18 16 24 24 C 1.36600 * 125.67236 * 309.69636 * 23 22 18 25 25 C 1.34838 * 108.19771 * 179.82983 * 24 23 22 26 26 C 1.40969 * 107.47250 * 0.42520 * 25 24 23 27 27 C 1.34838 * 107.47498 * 359.73282 * 26 25 24 28 28 H 1.09003 * 109.47345 * 59.99938 * 1 2 3 29 29 H 1.09002 * 109.47114 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47179 * 300.00222 * 1 2 3 31 31 H 1.09000 * 109.47321 * 305.00343 * 4 2 1 32 32 H 1.09006 * 109.47212 * 65.00375 * 4 2 1 33 33 H 1.09000 * 109.47140 * 300.00273 * 5 4 2 34 34 H 1.08998 * 109.47135 * 60.00132 * 5 4 2 35 35 H 0.96993 * 119.99712 * 0.02562 * 6 5 4 36 36 H 0.97006 * 120.00036 * 179.97438 * 10 9 7 37 37 H 0.96999 * 119.99870 * 265.00206 * 15 2 1 38 38 H 1.08001 * 124.41336 * 179.97438 * 20 19 18 39 39 H 1.07998 * 122.46120 * 180.23641 * 21 20 19 40 40 H 1.07998 * 125.90506 * 359.95528 * 24 23 22 41 41 H 1.08004 * 126.26810 * 180.18783 * 25 24 23 42 42 H 1.08006 * 126.26054 * 179.69978 * 26 25 24 43 43 H 1.07999 * 125.90271 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 3.5648 -0.6131 1.3138 6 7 4.0531 -1.3042 2.5098 7 6 5.3953 -1.3410 2.7792 8 1 6.0937 -0.8603 2.1102 9 6 5.8579 -1.9953 3.9126 10 7 5.0067 -2.5807 4.7281 11 14 7.6887 -2.0449 4.2804 12 1 8.0588 -0.8705 5.1104 13 1 8.0118 -3.2933 5.0170 14 1 8.4507 -2.0107 3.0063 15 7 2.0184 -0.6907 -1.1961 16 6 2.1471 -0.0183 -2.3571 17 8 1.8571 1.1629 -2.4120 18 6 2.6337 -0.7073 -3.5501 19 16 3.0914 -2.4027 -3.6341 20 6 3.4860 -2.2660 -5.2878 21 6 3.2765 -1.0240 -5.7329 22 6 2.8071 -0.1346 -4.7865 23 7 2.5314 1.2093 -5.0600 24 6 1.3730 1.8638 -4.7508 25 6 1.4864 3.1408 -5.1686 26 6 2.7557 3.2796 -5.7660 27 6 3.3737 2.0838 -5.6860 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6053 -0.2616 2.1370 32 1 1.7516 -1.7715 1.2057 33 1 3.9994 -1.0727 0.4261 34 1 3.8531 0.4371 1.3574 35 1 3.4258 -1.7362 3.1103 36 1 5.3300 -3.0383 5.5200 37 1 2.2490 -1.6318 -1.1525 38 1 3.8536 -3.0787 -5.8968 39 1 3.4635 -0.7359 -6.7568 40 1 0.5153 1.4335 -4.2553 41 1 0.7398 3.9147 -5.0678 42 1 3.1591 4.1789 -6.2074 43 1 4.3634 1.8566 -6.0538 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482859161.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:15 Heat of formation + Delta-G solvation = 65.677290 kcal Electronic energy + Delta-G solvation = -25653.015918 eV Core-core repulsion = 22019.474514 eV Total energy + Delta-G solvation = -3633.541404 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.59369 -39.76680 -37.93154 -36.47136 -34.39229 -32.22410 -32.00809 -30.90151 -29.27658 -28.60488 -27.90491 -25.16510 -24.03261 -22.45365 -21.48420 -21.30905 -20.62147 -20.36002 -19.13737 -18.92131 -17.41237 -17.05022 -16.28954 -15.76655 -15.24156 -15.00729 -14.71458 -14.43870 -14.19555 -13.87793 -13.76057 -13.53518 -13.40304 -13.36727 -13.04195 -12.86966 -12.64782 -12.39372 -12.29678 -12.00956 -11.89596 -11.47098 -11.23831 -11.05673 -10.82137 -10.68098 -10.60741 -10.08163 -10.05294 -9.72512 -9.60511 -9.27436 -9.04187 -8.88533 -8.32633 -8.05786 -6.95094 -5.79017 -3.07875 -0.00516 0.96301 1.37606 1.68702 2.49442 2.91836 2.98526 3.06344 3.12797 3.42187 3.47452 3.48849 4.43192 4.54841 4.65296 4.71195 4.92886 5.01000 5.18177 5.23152 5.30405 5.31214 5.43818 5.52707 5.55227 5.66029 5.68649 5.70288 5.73417 5.88662 5.98322 6.19239 6.23552 6.28758 6.29850 6.30939 6.43983 6.77529 6.82356 6.98762 7.20105 7.38817 7.43293 7.68319 8.07789 8.39999 9.51202 10.08325 10.43306 11.43880 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013014 B = 0.002856 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.066362 B = 9801.195390 C =10299.671370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.147 3.853 3 H 0.092 0.908 4 C -0.136 4.136 5 C 0.154 3.846 6 N -0.733 5.733 7 C -0.240 4.240 8 H 0.069 0.931 9 C -0.014 4.014 10 N -0.934 5.934 11 Si 0.907 3.093 12 H -0.289 1.289 13 H -0.291 1.291 14 H -0.282 1.282 15 N -0.712 5.712 16 C 0.585 3.415 17 O -0.514 6.514 18 C -0.279 4.279 19 S 0.260 5.740 20 C -0.221 4.221 21 C -0.151 4.151 22 C 0.182 3.818 23 N -0.389 5.389 24 C 0.051 3.949 25 C -0.211 4.211 26 C -0.187 4.187 27 C -0.021 4.021 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.017 0.983 34 H 0.019 0.981 35 H 0.384 0.616 36 H 0.255 0.745 37 H 0.397 0.603 38 H 0.178 0.822 39 H 0.152 0.848 40 H 0.157 0.843 41 H 0.135 0.865 42 H 0.136 0.864 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.221 1.610 -23.285 25.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.043 3.957 3 H 0.110 0.890 4 C -0.174 4.174 5 C 0.026 3.974 6 N -0.378 5.378 7 C -0.371 4.371 8 H 0.087 0.913 9 C -0.210 4.210 10 N -0.583 5.583 11 Si 0.738 3.262 12 H -0.217 1.217 13 H -0.217 1.217 14 H -0.208 1.208 15 N -0.364 5.364 16 C 0.370 3.630 17 O -0.392 6.392 18 C -0.402 4.402 19 S 0.527 5.473 20 C -0.360 4.360 21 C -0.183 4.183 22 C 0.074 3.926 23 N -0.064 5.064 24 C -0.076 4.076 25 C -0.235 4.235 26 C -0.212 4.212 27 C -0.147 4.147 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.100 0.900 32 H 0.087 0.913 33 H 0.035 0.965 34 H 0.036 0.964 35 H 0.217 0.783 36 H 0.065 0.935 37 H 0.232 0.768 38 H 0.196 0.804 39 H 0.169 0.831 40 H 0.174 0.826 41 H 0.153 0.847 42 H 0.154 0.846 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -9.145 0.966 -22.194 24.023 hybrid contribution 1.103 0.401 -0.587 1.312 sum -8.042 1.367 -22.780 24.197 Atomic orbital electron populations 1.22160 0.95171 1.02072 1.02469 1.21035 0.93697 0.97773 0.83211 0.89015 1.22082 0.98139 1.00813 0.96351 1.20632 0.90303 0.95703 0.90747 1.42358 1.05397 1.64905 1.25108 1.19229 0.83819 1.28494 1.05554 0.91263 1.24736 0.97730 1.00867 0.97624 1.69657 1.32801 1.40693 1.15114 0.86191 0.85065 0.77063 0.77900 1.21660 1.21730 1.20755 1.46007 1.66987 1.13820 1.09549 1.16695 0.78088 0.86390 0.81796 1.90909 1.49879 1.14239 1.84125 1.24704 1.17433 1.00326 0.97726 1.83323 1.56925 1.03041 1.03973 1.25120 1.07587 1.01849 1.01423 1.19753 1.05408 0.92071 1.01068 1.16957 1.00125 0.84454 0.91048 1.40896 1.14061 1.05291 1.46127 1.21713 0.89949 0.92974 1.02995 1.20836 0.99020 0.95879 1.07750 1.20884 0.96222 0.97067 1.07015 1.21796 0.97202 0.89979 1.05750 0.92347 0.92484 0.91296 0.89970 0.91313 0.96535 0.96356 0.78298 0.93500 0.76798 0.80431 0.83079 0.82605 0.84676 0.84623 0.82398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 9.48 37.15 0.35 -1.46 16 2 C 0.15 1.97 2.57 -67.93 -0.17 1.79 16 3 H 0.09 1.40 7.58 -51.93 -0.39 1.00 16 4 C -0.14 -2.06 4.87 -26.73 -0.13 -2.19 16 5 C 0.15 3.08 6.15 -4.04 -0.02 3.05 16 6 N -0.73 -18.54 5.60 -59.90 -0.34 -18.87 16 7 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 10 N -0.93 -28.15 13.06 55.49 0.72 -27.42 16 11 Si 0.91 22.46 29.55 -169.99 -5.02 17.43 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 14 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 15 N -0.71 -9.13 4.53 -55.29 -0.25 -9.38 16 16 C 0.58 8.23 7.68 -13.10 -0.10 8.13 16 17 O -0.51 -8.58 12.68 5.14 0.07 -8.51 16 18 C -0.28 -3.35 6.43 -36.75 -0.24 -3.59 16 19 S 0.26 2.21 22.13 -107.50 -2.38 -0.17 16 20 C -0.22 -1.60 10.90 29.10 0.32 -1.28 16 21 C -0.15 -1.33 9.97 -41.26 -0.41 -1.75 16 22 C 0.18 2.15 5.99 -84.55 -0.51 1.64 16 23 N -0.39 -5.09 2.65 -61.59 -0.16 -5.26 16 24 C 0.05 0.70 8.52 -16.63 -0.14 0.55 16 25 C -0.21 -2.72 10.86 -39.75 -0.43 -3.16 16 26 C -0.19 -2.27 10.86 -39.75 -0.43 -2.70 16 27 C -0.02 -0.26 11.25 -16.63 -0.19 -0.45 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.02 0.33 7.75 -51.93 -0.40 -0.07 16 34 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.38 10.07 7.67 -40.82 -0.31 9.75 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.40 4.55 7.70 -40.82 -0.31 4.24 16 38 H 0.18 0.75 8.06 -52.49 -0.42 0.33 16 39 H 0.15 1.08 8.06 -52.49 -0.42 0.65 16 40 H 0.16 2.07 7.43 -52.49 -0.39 1.68 16 41 H 0.14 1.50 8.06 -52.48 -0.42 1.08 16 42 H 0.14 1.34 8.06 -52.48 -0.42 0.92 16 43 H 0.16 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 375.96 15.07 5.67 5.67 Total: -1.00 -33.84 375.96 -10.06 -43.90 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -6.01 Total: 11.42 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: -2.35 Total: -8.81 kcal Atomic # 7 Polarization: -60.91 SS G_CDS: -0.02 Total: -60.93 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.07 Total: -8.51 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.43 kcal Atomic # 16 Polarization: 2.21 SS G_CDS: -2.38 Total: -0.17 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.84 -10.06 -43.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482859161.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.582 kcal (2) G-P(sol) polarization free energy of solvation -33.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds