Wall clock time and date at job start Tue Mar 31 2020 18:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47114 * 2 1 4 4 C 1.52998 * 109.47040 * 119.99421 * 2 1 3 5 5 C 1.53003 * 109.47153 * 185.00180 * 4 2 1 6 6 N 1.46507 * 109.47023 * 180.02562 * 5 4 2 7 7 C 1.36942 * 119.99854 * 179.97438 * 6 5 4 8 8 H 1.07996 * 119.99849 * 0.02562 * 7 6 5 9 9 C 1.38809 * 119.99732 * 179.97438 * 7 6 5 10 10 N 1.31615 * 120.00126 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99524 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47169 * 90.00204 * 11 9 7 13 13 H 1.48502 * 109.46746 * 209.99982 * 11 9 7 14 14 H 1.48500 * 109.47351 * 329.99612 * 11 9 7 15 15 N 1.46503 * 109.47461 * 239.99744 * 2 1 3 16 16 C 1.34776 * 119.99644 * 85.00048 * 15 2 1 17 17 O 1.21753 * 120.00587 * 359.97438 * 16 15 2 18 18 C 1.46112 * 119.99411 * 180.02562 * 16 15 2 19 19 S 1.75809 * 125.48133 * 359.97438 * 18 16 15 20 20 C 1.70566 * 91.67714 * 180.02562 * 19 18 16 21 21 C 1.33583 * 111.17407 * 359.74963 * 20 19 18 22 22 C 1.37355 * 125.47669 * 179.97438 * 18 16 15 23 23 N 1.39885 * 123.48562 * 359.95414 * 22 18 16 24 24 C 1.36600 * 125.67236 * 309.69636 * 23 22 18 25 25 C 1.34838 * 108.19771 * 179.82983 * 24 23 22 26 26 C 1.40969 * 107.47250 * 0.42520 * 25 24 23 27 27 C 1.34838 * 107.47498 * 359.73282 * 26 25 24 28 28 H 1.09003 * 109.47345 * 59.99938 * 1 2 3 29 29 H 1.09002 * 109.47114 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47179 * 300.00222 * 1 2 3 31 31 H 1.09000 * 109.47321 * 305.00343 * 4 2 1 32 32 H 1.09006 * 109.47212 * 65.00375 * 4 2 1 33 33 H 1.09000 * 109.47140 * 300.00273 * 5 4 2 34 34 H 1.08998 * 109.47135 * 60.00132 * 5 4 2 35 35 H 0.96993 * 119.99712 * 0.02562 * 6 5 4 36 36 H 0.97006 * 120.00036 * 179.97438 * 10 9 7 37 37 H 0.96999 * 119.99870 * 265.00206 * 15 2 1 38 38 H 1.08001 * 124.41336 * 179.97438 * 20 19 18 39 39 H 1.07998 * 122.46120 * 180.23641 * 21 20 19 40 40 H 1.07998 * 125.90506 * 359.95528 * 24 23 22 41 41 H 1.08004 * 126.26810 * 180.18783 * 25 24 23 42 42 H 1.08006 * 126.26054 * 179.69978 * 26 25 24 43 43 H 1.07999 * 125.90271 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 3.5648 -0.6131 1.3138 6 7 4.0531 -1.3042 2.5098 7 6 5.3953 -1.3410 2.7792 8 1 6.0937 -0.8603 2.1102 9 6 5.8579 -1.9953 3.9126 10 7 5.0067 -2.5807 4.7281 11 14 7.6887 -2.0449 4.2804 12 1 8.0588 -0.8705 5.1104 13 1 8.0118 -3.2933 5.0170 14 1 8.4507 -2.0107 3.0063 15 7 2.0184 -0.6907 -1.1961 16 6 2.1471 -0.0183 -2.3571 17 8 1.8571 1.1629 -2.4120 18 6 2.6337 -0.7073 -3.5501 19 16 3.0914 -2.4027 -3.6341 20 6 3.4860 -2.2660 -5.2878 21 6 3.2765 -1.0240 -5.7329 22 6 2.8071 -0.1346 -4.7865 23 7 2.5314 1.2093 -5.0600 24 6 1.3730 1.8638 -4.7508 25 6 1.4864 3.1408 -5.1686 26 6 2.7557 3.2796 -5.7660 27 6 3.3737 2.0838 -5.6860 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6053 -0.2616 2.1370 32 1 1.7516 -1.7715 1.2057 33 1 3.9994 -1.0727 0.4261 34 1 3.8531 0.4371 1.3574 35 1 3.4258 -1.7362 3.1103 36 1 5.3300 -3.0383 5.5200 37 1 2.2490 -1.6318 -1.1525 38 1 3.8536 -3.0787 -5.8968 39 1 3.4635 -0.7359 -6.7568 40 1 0.5153 1.4335 -4.2553 41 1 0.7398 3.9147 -5.0678 42 1 3.1591 4.1789 -6.2074 43 1 4.3634 1.8566 -6.0538 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482859161.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:14 Heat of formation + Delta-G solvation = 45.416198 kcal Electronic energy + Delta-G solvation = -25653.894505 eV Core-core repulsion = 22019.474514 eV Total energy + Delta-G solvation = -3634.419990 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.49459 -40.82967 -38.74547 -37.76979 -36.12873 -33.72195 -32.91060 -32.42607 -30.22643 -29.57944 -29.35792 -26.10705 -25.73518 -23.65074 -22.85798 -22.26497 -21.76250 -21.27767 -20.05048 -19.90018 -19.11525 -18.24194 -17.26093 -16.86928 -16.61581 -16.18928 -15.76744 -15.52863 -15.41979 -15.25251 -15.14845 -14.87431 -14.61385 -14.34781 -14.23216 -13.94262 -13.50580 -13.42685 -13.18320 -13.10815 -12.95491 -12.91024 -12.88961 -12.41468 -12.28588 -12.14852 -12.03139 -11.97369 -11.67119 -11.16025 -10.97080 -10.42215 -10.25885 -9.86660 -9.16563 -9.03543 -9.01623 -7.97970 -5.27267 -0.79725 0.22632 0.69975 0.94616 1.46128 1.47853 1.56217 1.57276 1.98324 2.02351 2.11272 2.16754 2.53733 3.35613 3.53328 3.70547 3.90203 3.97903 4.01633 4.11831 4.27049 4.33294 4.36228 4.51954 4.52932 4.59751 4.66351 4.72742 4.75958 4.80820 4.89716 4.95517 4.99296 5.15313 5.23024 5.29263 5.35687 5.38225 5.45903 5.46827 6.05429 6.24423 6.26397 6.37348 6.53282 7.04995 7.31315 8.05257 8.30401 9.25222 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013014 B = 0.002856 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.066362 B = 9801.195390 C =10299.671370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.155 3.845 3 H 0.070 0.930 4 C -0.119 4.119 5 C 0.154 3.846 6 N -0.744 5.744 7 C -0.250 4.250 8 H 0.070 0.930 9 C -0.070 4.070 10 N -0.966 5.966 11 Si 0.972 3.028 12 H -0.288 1.288 13 H -0.291 1.291 14 H -0.270 1.270 15 N -0.709 5.709 16 C 0.581 3.419 17 O -0.550 6.550 18 C -0.318 4.318 19 S 0.292 5.708 20 C -0.196 4.196 21 C -0.163 4.163 22 C 0.169 3.831 23 N -0.396 5.396 24 C 0.032 3.968 25 C -0.225 4.225 26 C -0.200 4.200 27 C -0.028 4.028 28 H 0.050 0.950 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.020 0.980 34 H 0.005 0.995 35 H 0.377 0.623 36 H 0.253 0.747 37 H 0.405 0.595 38 H 0.216 0.784 39 H 0.169 0.831 40 H 0.149 0.851 41 H 0.145 0.855 42 H 0.155 0.845 43 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.367 0.331 -24.832 26.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.050 3.950 3 H 0.088 0.912 4 C -0.158 4.158 5 C 0.028 3.972 6 N -0.387 5.387 7 C -0.382 4.382 8 H 0.088 0.912 9 C -0.263 4.263 10 N -0.616 5.616 11 Si 0.800 3.200 12 H -0.215 1.215 13 H -0.217 1.217 14 H -0.195 1.195 15 N -0.360 5.360 16 C 0.368 3.632 17 O -0.430 6.430 18 C -0.440 4.440 19 S 0.560 5.440 20 C -0.335 4.335 21 C -0.194 4.194 22 C 0.060 3.940 23 N -0.070 5.070 24 C -0.096 4.096 25 C -0.249 4.249 26 C -0.225 4.225 27 C -0.154 4.154 28 H 0.070 0.930 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.038 0.962 34 H 0.023 0.977 35 H 0.209 0.791 36 H 0.062 0.938 37 H 0.241 0.759 38 H 0.233 0.767 39 H 0.187 0.813 40 H 0.166 0.834 41 H 0.163 0.837 42 H 0.173 0.827 43 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -8.293 -0.324 -23.768 25.175 hybrid contribution 0.843 0.774 -0.164 1.156 sum -7.450 0.450 -23.932 25.069 Atomic orbital electron populations 1.22073 0.93168 1.03088 1.02629 1.20869 0.95112 0.96327 0.82689 0.91206 1.21919 0.94573 1.01882 0.97382 1.20738 0.93522 0.94099 0.88848 1.42534 1.04516 1.65216 1.26444 1.19578 0.85245 1.27865 1.05511 0.91240 1.25536 1.02003 1.01076 0.97697 1.69798 1.34601 1.41723 1.15524 0.85172 0.80134 0.76738 0.77914 1.21526 1.21733 1.19507 1.45948 1.66830 1.14076 1.09155 1.17022 0.77504 0.86132 0.82510 1.90882 1.51504 1.15787 1.84796 1.24639 1.19675 1.02588 0.97108 1.83204 1.55830 1.00054 1.04881 1.25595 1.04929 1.02133 1.00835 1.19891 1.05954 0.92076 1.01431 1.17421 1.00375 0.84341 0.91815 1.41063 1.13898 1.06096 1.45960 1.21739 0.90476 0.93572 1.03811 1.21128 0.99882 0.96009 1.07837 1.21205 0.95976 0.98043 1.07242 1.22279 0.97966 0.89908 1.05212 0.93042 0.90993 0.90282 0.89728 0.90063 0.96177 0.97742 0.79124 0.93824 0.75940 0.76703 0.81313 0.83375 0.83733 0.82697 0.80084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 9.48 71.98 0.68 -2.62 16 2 C 0.15 4.12 2.57 44.99 0.12 4.24 16 3 H 0.07 2.20 7.58 -2.39 -0.02 2.18 16 4 C -0.12 -3.56 4.87 30.59 0.15 -3.41 16 5 C 0.15 6.18 6.15 86.38 0.53 6.71 16 6 N -0.74 -37.70 5.60 -343.44 -1.92 -39.62 16 7 C -0.25 -14.10 9.99 84.03 0.84 -13.26 16 8 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 9 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 10 N -0.97 -58.44 13.06 21.65 0.28 -58.15 16 11 Si 0.97 45.94 29.55 68.60 2.03 47.97 16 12 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 13 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 14 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 15 N -0.71 -18.04 4.53 -447.03 -2.02 -20.06 16 16 C 0.58 16.62 7.68 86.29 0.66 17.29 16 17 O -0.55 -19.12 12.68 -4.52 -0.06 -19.17 16 18 C -0.32 -7.48 6.43 24.11 0.15 -7.33 16 19 S 0.29 4.35 22.13 -56.49 -1.25 3.10 16 20 C -0.20 -2.16 10.90 66.76 0.73 -1.43 16 21 C -0.16 -2.50 9.97 21.18 0.21 -2.29 16 22 C 0.17 3.88 5.99 37.61 0.23 4.11 16 23 N -0.40 -10.38 2.65 -348.78 -0.93 -11.31 16 24 C 0.03 0.90 8.52 83.17 0.71 1.61 16 25 C -0.22 -5.95 10.86 22.16 0.24 -5.71 16 26 C -0.20 -4.81 10.86 22.16 0.24 -4.57 16 27 C -0.03 -0.66 11.25 83.17 0.94 0.28 16 28 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 32 H 0.08 2.25 8.14 -2.38 -0.02 2.23 16 33 H 0.02 0.80 7.75 -2.39 -0.02 0.78 16 34 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 35 H 0.38 19.88 7.67 -92.71 -0.71 19.17 16 36 H 0.25 14.78 8.31 -92.70 -0.77 14.01 16 37 H 0.40 8.93 7.70 -92.71 -0.71 8.22 16 38 H 0.22 0.71 8.06 -2.91 -0.02 0.69 16 39 H 0.17 1.93 8.06 -2.91 -0.02 1.91 16 40 H 0.15 4.24 7.43 -2.91 -0.02 4.21 16 41 H 0.14 3.33 8.06 -2.91 -0.02 3.30 16 42 H 0.16 2.93 8.06 -2.91 -0.02 2.91 16 43 H 0.18 3.20 8.06 -2.91 -0.02 3.17 16 Total: -1.00 -73.66 375.96 2.63 -71.02 By element: Atomic # 1 Polarization: 36.57 SS G_CDS: -0.39 Total: 36.18 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: 6.89 Total: -9.96 kcal Atomic # 7 Polarization: -124.55 SS G_CDS: -4.59 Total: -129.14 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -0.06 Total: -19.17 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Atomic # 16 Polarization: 4.35 SS G_CDS: -1.25 Total: 3.10 kcal Total: -73.66 2.63 -71.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482859161.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.440 kcal (2) G-P(sol) polarization free energy of solvation -73.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds