Wall clock time and date at job start Tue Mar 31 2020 18:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46838 * 2 1 4 4 C 1.53002 * 109.46781 * 119.99666 * 2 1 3 5 5 N 1.46499 * 109.46796 * 175.00271 * 4 2 1 6 6 C 1.34775 * 119.99934 * 180.02562 * 5 4 2 7 7 O 1.21280 * 119.99919 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.99920 * 179.72154 * 6 5 4 9 9 C 1.50696 * 109.46970 * 180.27283 * 8 6 5 10 10 N 1.28733 * 121.08544 * 90.02977 * 9 8 6 11 11 S 1.69383 * 108.98756 * 180.02562 * 10 9 8 12 12 C 1.76517 * 96.12089 * 359.97438 * 11 10 9 13 13 C 1.38785 * 133.55500 * 180.02562 * 12 11 10 14 14 C 1.36716 * 119.75494 * 179.97438 * 13 12 11 15 15 C 1.38972 * 120.15206 * 0.02562 * 14 13 12 16 16 C 1.36044 * 121.16093 * 359.97438 * 15 14 13 17 17 C 1.40807 * 105.51548 * 359.74378 * 12 11 10 18 18 N 1.46496 * 109.47215 * 240.00227 * 2 1 3 19 19 C 1.46504 * 119.99865 * 299.99585 * 18 2 1 20 20 C 1.36939 * 120.00130 * 120.00344 * 18 2 1 21 21 H 1.08000 * 120.00020 * 23.08918 * 20 18 2 22 22 C 1.38814 * 120.00028 * 203.09989 * 20 18 2 23 23 N 1.31620 * 119.99616 * 12.98590 * 22 20 18 24 24 Si 1.86794 * 119.99834 * 192.99076 * 22 20 18 25 25 H 1.48494 * 109.47223 * 59.99866 * 24 22 20 26 26 H 1.48509 * 109.46872 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47430 * 299.99309 * 24 22 20 28 28 H 1.09002 * 109.47217 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47215 * 300.00100 * 1 2 3 30 30 H 1.09006 * 109.46992 * 60.00189 * 1 2 3 31 31 H 1.09003 * 109.46460 * 55.00696 * 4 2 1 32 32 H 1.08999 * 109.47417 * 295.00086 * 4 2 1 33 33 H 0.97000 * 120.00078 * 0.02562 * 5 4 2 34 34 H 1.08999 * 109.47275 * 300.27715 * 8 6 5 35 35 H 1.09002 * 109.46805 * 60.27873 * 8 6 5 36 36 H 1.07997 * 120.12397 * 359.94608 * 13 12 11 37 37 H 1.08007 * 119.92579 * 179.97438 * 14 13 12 38 38 H 1.08002 * 119.42062 * 180.02562 * 15 14 13 39 39 H 1.08000 * 119.89482 * 180.02562 * 16 15 14 40 40 H 1.09004 * 109.46863 * 95.13123 * 19 18 2 41 41 H 1.08999 * 109.47047 * 215.12822 * 19 18 2 42 42 H 1.08997 * 109.47127 * 335.13040 * 19 18 2 43 43 H 0.97003 * 119.99469 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1907 6 6 4.1729 -1.4290 2.1908 7 8 3.5698 -1.8840 3.1396 8 6 5.6743 -1.5427 2.1275 9 6 6.1761 -2.2583 3.3551 10 7 6.3028 -3.5393 3.3725 11 16 6.8840 -4.0150 4.8907 12 6 6.9739 -2.3905 5.5753 13 6 7.3647 -1.8938 6.8109 14 6 7.3219 -0.5475 7.0453 15 6 6.8884 0.3208 6.0507 16 6 6.5004 -0.1425 4.8318 17 6 6.5380 -1.5262 4.5528 18 7 2.0184 -0.6905 -1.1962 19 6 1.6645 -2.0932 -1.4280 20 6 2.8057 -0.0250 -2.0975 21 1 3.3701 0.8412 -1.7853 22 6 2.8783 -0.4637 -3.4125 23 7 2.0110 -1.3467 -3.8604 24 14 4.2067 0.1991 -4.5462 25 1 5.5430 -0.1252 -3.9856 26 1 4.0687 -0.4235 -5.8874 27 1 4.0648 1.6723 -4.6669 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.6053 -1.7198 1.2951 32 1 1.7516 -0.1583 2.1370 33 1 3.9824 -0.4621 0.4321 34 1 5.9590 -2.1042 1.2377 35 1 6.1126 -0.5456 2.0837 36 1 7.7009 -2.5682 7.5845 37 1 7.6250 -0.1580 8.0061 38 1 6.8597 1.3821 6.2485 39 1 6.1674 0.5507 4.0736 40 1 0.7892 -2.1448 -2.0755 41 1 2.5003 -2.6046 -1.9055 42 1 1.4408 -2.5736 -0.4755 43 1 2.0620 -1.6535 -4.7792 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485386490.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:01 Heat of formation + Delta-G solvation = 15.383043 kcal Electronic energy + Delta-G solvation = -25796.975542 eV Core-core repulsion = 22161.253216 eV Total energy + Delta-G solvation = -3635.722326 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.33451 -40.34096 -38.47348 -37.64867 -35.39257 -33.78626 -32.40288 -31.52628 -31.40741 -30.80791 -28.00519 -27.01883 -24.96883 -24.47949 -23.81066 -22.06944 -21.15569 -20.56039 -19.55156 -18.84401 -18.07007 -17.41901 -17.21873 -17.07464 -16.33201 -16.21755 -15.99486 -15.72427 -15.56748 -14.91443 -14.86321 -14.61244 -14.46336 -14.29136 -13.93597 -13.66433 -13.25482 -13.07100 -13.04157 -12.87328 -12.84054 -12.62279 -12.58244 -12.47643 -12.31160 -12.10492 -11.77574 -11.76722 -11.60828 -11.49385 -11.07303 -10.76968 -10.57915 -9.97047 -9.95638 -8.94882 -8.75711 -7.76202 -5.25314 -0.52406 0.20762 0.37534 0.70461 1.02089 1.53080 1.54715 1.60299 1.62231 2.35246 2.55788 2.68340 3.18863 3.39186 3.45937 3.65188 3.81443 3.99852 4.05712 4.08083 4.21134 4.30459 4.37973 4.39111 4.47472 4.61712 4.64908 4.73982 4.77073 4.93623 4.94532 5.04627 5.05290 5.24302 5.26971 5.36295 5.42925 5.43348 5.54771 5.59090 5.71677 5.74879 5.85253 6.37560 6.63416 7.18888 7.26967 7.91016 8.37784 9.27186 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015674 B = 0.002813 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.929342 B = 9951.576671 C =10268.489735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.158 3.842 3 H 0.081 0.919 4 C 0.118 3.882 5 N -0.700 5.700 6 C 0.519 3.481 7 O -0.586 6.586 8 C -0.078 4.078 9 C 0.180 3.820 10 N -0.474 5.474 11 S 0.156 5.844 12 C -0.147 4.147 13 C -0.093 4.093 14 C -0.070 4.070 15 C -0.120 4.120 16 C -0.057 4.057 17 C -0.147 4.147 18 N -0.602 5.602 19 C 0.185 3.815 20 C -0.256 4.256 21 H 0.087 0.913 22 C -0.054 4.054 23 N -0.941 5.941 24 Si 0.965 3.035 25 H -0.273 1.273 26 H -0.308 1.308 27 H -0.274 1.274 28 H 0.039 0.961 29 H 0.077 0.923 30 H 0.041 0.959 31 H 0.039 0.961 32 H 0.076 0.924 33 H 0.414 0.586 34 H 0.123 0.877 35 H 0.157 0.843 36 H 0.153 0.847 37 H 0.174 0.826 38 H 0.167 0.833 39 H 0.149 0.851 40 H 0.001 0.999 41 H 0.011 0.989 42 H 0.015 0.985 43 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.958 6.195 21.725 25.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.051 3.949 3 H 0.099 0.901 4 C -0.008 4.008 5 N -0.350 5.350 6 C 0.304 3.696 7 O -0.467 6.467 8 C -0.122 4.122 9 C -0.010 4.010 10 N -0.285 5.285 11 S 0.311 5.689 12 C -0.267 4.267 13 C -0.116 4.116 14 C -0.093 4.093 15 C -0.140 4.140 16 C -0.079 4.079 17 C -0.158 4.158 18 N -0.325 5.325 19 C 0.040 3.960 20 C -0.386 4.386 21 H 0.104 0.896 22 C -0.249 4.249 23 N -0.588 5.588 24 Si 0.794 3.206 25 H -0.199 1.199 26 H -0.235 1.235 27 H -0.200 1.200 28 H 0.058 0.942 29 H 0.096 0.904 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.094 0.906 33 H 0.251 0.749 34 H 0.141 0.859 35 H 0.174 0.826 36 H 0.171 0.829 37 H 0.191 0.809 38 H 0.185 0.815 39 H 0.167 0.833 40 H 0.019 0.981 41 H 0.030 0.970 42 H 0.034 0.966 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 11.617 3.408 21.861 24.990 hybrid contribution 0.167 1.239 -1.655 2.074 sum 11.784 4.647 20.207 23.849 Atomic orbital electron populations 1.22090 0.96430 1.01030 1.01412 1.20790 0.93365 0.95749 0.84997 0.90059 1.21767 0.79875 1.00142 0.99014 1.45808 1.08076 1.58212 1.22923 1.20478 0.89721 0.77285 0.82077 1.90688 1.71135 1.49545 1.35286 1.20595 0.91975 1.04358 0.95307 1.22231 0.93989 0.89065 0.95701 1.75688 1.20738 1.15887 1.16165 1.84585 1.69140 1.09638 1.05497 1.23729 1.05646 0.97476 0.99894 1.20396 1.00540 0.97320 0.93357 1.21566 0.95207 0.91715 1.00768 1.21253 0.98163 1.02373 0.92188 1.21052 0.96541 0.91280 0.99027 1.20309 1.06376 0.96917 0.92227 1.44126 1.58387 1.07686 1.22309 1.20350 0.97347 0.84361 0.93986 1.19603 1.18416 1.11334 0.89279 0.89551 1.25794 1.00334 1.00351 0.98405 1.70249 1.37081 1.36170 1.15264 0.85375 0.79760 0.77932 0.77538 1.19928 1.23484 1.20015 0.94199 0.90427 0.93966 0.94227 0.90574 0.74868 0.85869 0.82562 0.82926 0.80892 0.81544 0.83306 0.98085 0.96984 0.96614 0.94708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.00 9.19 71.98 0.66 -4.34 16 2 C 0.16 5.61 2.87 44.99 0.13 5.74 16 3 H 0.08 2.71 7.86 -2.39 -0.02 2.69 16 4 C 0.12 3.88 4.93 86.38 0.43 4.30 16 5 N -0.70 -21.75 5.39 -463.05 -2.49 -24.24 16 6 C 0.52 16.46 7.82 87.66 0.69 17.15 16 7 O -0.59 -23.23 16.03 -3.03 -0.05 -23.28 16 8 C -0.08 -1.93 5.97 29.10 0.17 -1.76 16 9 C 0.18 5.22 5.37 44.73 0.24 5.46 16 10 N -0.47 -15.79 11.84 -46.34 -0.55 -16.33 16 11 S 0.16 4.36 23.86 -56.49 -1.35 3.01 16 12 C -0.15 -3.53 6.71 23.03 0.15 -3.37 16 13 C -0.09 -1.51 10.02 22.04 0.22 -1.29 16 14 C -0.07 -0.77 10.01 22.09 0.22 -0.55 16 15 C -0.12 -1.43 9.92 21.94 0.22 -1.22 16 16 C -0.06 -1.00 9.72 22.49 0.22 -0.78 16 17 C -0.15 -3.65 6.04 -20.20 -0.12 -3.77 16 18 N -0.60 -27.05 2.28 -702.76 -1.61 -28.65 16 19 C 0.18 8.99 8.00 127.77 1.02 10.01 16 20 C -0.26 -12.47 9.31 84.03 0.78 -11.69 16 21 H 0.09 3.84 7.82 -2.91 -0.02 3.82 16 22 C -0.05 -2.82 5.10 84.86 0.43 -2.39 16 23 N -0.94 -54.16 10.72 21.65 0.23 -53.92 16 24 Si 0.96 42.35 29.57 68.60 2.03 44.38 16 25 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 26 H -0.31 -14.24 7.11 99.48 0.71 -13.53 16 27 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 28 H 0.04 1.39 7.67 -2.39 -0.02 1.37 16 29 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.04 1.54 8.14 -2.38 -0.02 1.53 16 31 H 0.04 1.48 6.86 -2.39 -0.02 1.47 16 32 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.41 12.48 7.89 -92.71 -0.73 11.75 16 34 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 35 H 0.16 2.48 7.54 -2.39 -0.02 2.47 16 36 H 0.15 1.72 8.06 -2.91 -0.02 1.69 16 37 H 0.17 0.56 8.06 -2.91 -0.02 0.54 16 38 H 0.17 0.84 8.06 -2.91 -0.02 0.82 16 39 H 0.15 1.96 7.64 -2.91 -0.02 1.94 16 40 H 0.00 0.05 7.34 -2.39 -0.02 0.03 16 41 H 0.01 0.61 7.35 -2.39 -0.02 0.60 16 42 H 0.02 0.69 6.53 -2.39 -0.02 0.67 16 43 H 0.24 13.92 8.31 -92.71 -0.77 13.15 16 Total: -1.00 -72.82 371.59 1.98 -70.84 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: 0.30 Total: 16.71 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: 5.47 Total: 11.50 kcal Atomic # 7 Polarization: -118.74 SS G_CDS: -4.42 Total: -123.16 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -0.05 Total: -23.28 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Atomic # 16 Polarization: 4.36 SS G_CDS: -1.35 Total: 3.01 kcal Total: -72.82 1.98 -70.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485386490.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.219 kcal (2) G-P(sol) polarization free energy of solvation -72.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds