Wall clock time and date at job start Tue Mar 31 2020 18:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47115 * 2 1 4 4 C 1.52998 * 109.47396 * 239.99718 * 2 1 3 5 5 N 1.46495 * 109.47161 * 184.99926 * 4 2 1 6 6 C 1.34780 * 120.00054 * 179.97438 * 5 4 2 7 7 O 1.21276 * 119.99893 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.99885 * 180.02562 * 6 5 4 9 9 S 1.81003 * 109.46974 * 179.97438 * 8 6 5 10 10 C 1.76199 * 100.00176 * 179.97438 * 9 8 6 11 11 H 1.07998 * 119.99967 * 0.02562 * 10 9 8 12 12 C 1.38793 * 119.99732 * 179.97438 * 10 9 8 13 13 N 1.31629 * 120.00716 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 119.99750 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47093 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.46941 * 119.99859 * 14 12 10 17 17 H 1.48501 * 109.47221 * 240.00092 * 14 12 10 18 18 N 1.46901 * 109.47164 * 119.99611 * 2 1 3 19 19 C 1.46904 * 110.99871 * 275.00144 * 18 2 1 20 20 C 1.50699 * 109.46846 * 179.97438 * 19 18 2 21 21 C 1.37974 * 120.07718 * 259.99924 * 20 19 18 22 22 C 1.38345 * 120.15009 * 179.97438 * 21 20 19 23 23 C 1.38378 * 120.30569 * 359.97438 * 22 21 20 24 24 C 1.37928 * 120.15554 * 359.97438 * 23 22 21 25 25 C 1.39609 * 120.07867 * 79.97669 * 20 19 18 26 26 C 1.43198 * 120.14920 * 0.02562 * 25 20 19 27 27 N 4.52641 * 154.56356 * 87.62964 * 2 1 3 28 28 H 1.08996 * 109.47227 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47524 * 300.00461 * 1 2 3 30 30 H 1.09000 * 109.47546 * 60.00346 * 1 2 3 31 31 H 1.09002 * 109.46846 * 304.99660 * 4 2 1 32 32 H 1.08996 * 109.47055 * 65.00004 * 4 2 1 33 33 H 0.96998 * 120.00445 * 359.97438 * 5 4 2 34 34 H 1.09002 * 109.46934 * 299.99463 * 8 6 5 35 35 H 1.08996 * 109.47330 * 60.00030 * 8 6 5 36 36 H 0.96995 * 120.00187 * 179.97438 * 13 12 10 37 37 H 1.00898 * 110.99863 * 38.95372 * 18 2 1 38 38 H 1.09004 * 109.46964 * 60.00217 * 19 18 2 39 39 H 1.08997 * 109.47382 * 299.99588 * 19 18 2 40 40 H 1.07998 * 119.92213 * 0.25376 * 21 20 19 41 41 H 1.07998 * 119.84620 * 179.97438 * 22 21 20 42 42 H 1.08004 * 119.92473 * 179.97438 * 23 22 21 43 43 H 1.07991 * 120.07970 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8264 -1.1904 6 6 4.1730 -1.4292 -2.1905 7 8 3.5699 -1.8851 -3.1388 8 6 5.6749 -1.5378 -2.1298 9 16 6.2782 -2.3923 -3.6070 10 6 8.0100 -2.3791 -3.2823 11 1 8.3862 -1.9258 -2.3771 12 6 8.8904 -2.9522 -4.1893 13 7 8.4318 -3.5060 -5.2919 14 14 10.7265 -2.9376 -3.8455 15 1 10.9820 -2.2593 -2.5494 16 1 11.2293 -4.3334 -3.7818 17 1 11.4279 -2.2078 -4.9321 18 7 2.0196 -0.6924 1.1995 19 6 2.0824 0.2228 2.3469 20 6 2.5872 -0.5216 3.5560 21 6 1.6992 -0.9735 4.5104 22 6 2.1610 -1.6574 5.6208 23 6 3.5149 -1.8937 5.7822 24 6 4.4136 -1.4484 4.8354 25 6 3.9546 -0.7559 3.7129 26 6 4.8820 -0.2897 2.7265 27 7 5.6176 0.0804 1.9425 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.6054 -1.7199 -1.2950 32 1 1.7517 -0.1584 -2.1369 33 1 3.9824 -0.4621 -0.4319 34 1 6.1098 -0.5393 -2.0842 35 1 5.9629 -2.1006 -1.2419 36 1 9.0472 -3.9062 -5.9259 37 1 1.4495 -1.4978 1.4101 38 1 1.0869 0.6165 2.5525 39 1 2.7588 1.0463 2.1182 40 1 0.6408 -0.7968 4.3881 41 1 1.4616 -2.0086 6.3650 42 1 3.8687 -2.4279 6.6517 43 1 5.4699 -1.6338 4.9625 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491397489.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:34 Heat of formation + Delta-G solvation = 13.188005 kcal Electronic energy + Delta-G solvation = -24922.237025 eV Core-core repulsion = 21286.419515 eV Total energy + Delta-G solvation = -3635.817510 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.18118 -39.10462 -37.50900 -36.48229 -34.23488 -32.61016 -32.33962 -31.70722 -30.13902 -29.11928 -26.16785 -25.52648 -25.14836 -24.05396 -21.96382 -21.29970 -20.05864 -19.08435 -17.73464 -16.78043 -16.35876 -16.10688 -16.01510 -15.90052 -15.02151 -14.86606 -14.72525 -14.62408 -14.19666 -14.03481 -13.82660 -13.44411 -13.25422 -13.13669 -12.94551 -12.82503 -12.75349 -12.64248 -12.53764 -12.40306 -12.04689 -11.74111 -11.64063 -11.38413 -11.16442 -11.00217 -10.92129 -10.67546 -9.71114 -9.45077 -9.29606 -9.24497 -8.99225 -8.84523 -8.64739 -8.12183 -6.39278 -6.13242 -3.82269 0.38709 0.79955 2.58842 2.71072 3.17480 3.26944 3.28536 3.34427 3.41180 3.45767 3.65090 3.81646 3.94217 4.20405 4.29210 4.31824 4.52845 4.55482 4.70802 4.72923 4.91046 4.95644 5.01368 5.09648 5.21732 5.28488 5.29978 5.32742 5.43886 5.46600 5.65733 5.70303 5.76259 5.79743 5.91902 5.93625 5.96897 6.06683 6.31925 6.32837 6.52398 6.81048 6.99216 7.39708 7.69477 7.96158 8.45262 8.81106 9.32386 10.94349 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011873 B = 0.002801 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.668009 B = 9994.500254 C =11883.795929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.072 3.928 3 H 0.084 0.916 4 C 0.134 3.866 5 N -0.726 5.726 6 C 0.531 3.469 7 O -0.525 6.525 8 C -0.150 4.150 9 S -0.062 6.062 10 C -0.531 4.531 11 H 0.072 0.928 12 C 0.072 3.928 13 N -0.869 5.869 14 Si 0.917 3.083 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.280 1.280 18 N -0.678 5.678 19 C 0.090 3.910 20 C -0.041 4.041 21 C -0.114 4.114 22 C -0.094 4.094 23 C -0.119 4.119 24 C -0.074 4.074 25 C -0.001 4.001 26 C 0.247 3.753 27 N -0.398 5.398 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.402 0.598 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.267 0.733 37 H 0.349 0.651 38 H 0.050 0.950 39 H 0.082 0.918 40 H 0.130 0.870 41 H 0.129 0.871 42 H 0.132 0.868 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.643 7.610 26.325 33.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.038 4.038 3 H 0.103 0.897 4 C 0.008 3.992 5 N -0.380 5.380 6 C 0.317 3.683 7 O -0.400 6.400 8 C -0.300 4.300 9 S 0.165 5.835 10 C -0.679 4.679 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.505 5.505 14 Si 0.744 3.256 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.206 1.206 18 N -0.310 5.310 19 C -0.038 4.038 20 C -0.044 4.044 21 C -0.133 4.133 22 C -0.112 4.112 23 C -0.137 4.137 24 C -0.094 4.094 25 C -0.004 4.004 26 C -0.069 4.069 27 N -0.072 5.072 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.237 0.763 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.077 0.923 37 H 0.168 0.832 38 H 0.068 0.932 39 H 0.100 0.900 40 H 0.148 0.852 41 H 0.147 0.853 42 H 0.150 0.850 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -17.804 7.426 23.173 30.152 hybrid contribution 0.863 0.580 2.270 2.496 sum -16.942 8.006 25.443 31.598 Atomic orbital electron populations 1.22401 0.95838 1.02827 1.02719 1.21859 0.93493 0.98382 0.90109 0.89737 1.21233 0.81469 1.00581 0.95877 1.45821 1.06689 1.61353 1.24178 1.20275 0.89462 0.76853 0.81731 1.90677 1.69924 1.46538 1.32909 1.23493 0.93827 1.05482 1.07225 1.85296 1.04501 1.73133 1.20597 1.22929 0.91630 1.43782 1.09608 0.90934 1.24983 0.99507 0.94649 0.94503 1.70034 1.35168 1.35753 1.09515 0.86131 0.83146 0.77925 0.78402 1.19613 1.20596 1.20601 1.60527 1.58257 1.09446 1.02745 1.20998 1.00167 0.94743 0.87897 1.19809 0.91516 0.97388 0.95676 1.21002 0.99514 0.98715 0.94054 1.21364 0.95860 0.96726 0.97297 1.21131 0.93129 1.00092 0.99322 1.21265 1.00715 0.95264 0.92161 1.15873 0.89974 1.02095 0.92504 1.25575 0.93380 0.94515 0.93445 1.81386 1.09134 1.07884 1.08826 0.91791 0.92317 0.91318 0.91703 0.91364 0.76305 0.89461 0.89487 0.92350 0.83166 0.93228 0.89953 0.85218 0.85283 0.84961 0.84830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.05 9.16 37.15 0.34 -0.71 16 2 C 0.07 0.58 2.75 -67.72 -0.19 0.40 16 3 H 0.08 0.70 7.80 -51.93 -0.40 0.29 16 4 C 0.13 1.65 5.37 -4.05 -0.02 1.63 16 5 N -0.73 -11.47 5.39 -60.30 -0.32 -11.80 16 6 C 0.53 11.14 7.85 -10.98 -0.09 11.05 16 7 O -0.53 -12.82 15.86 5.56 0.09 -12.73 16 8 C -0.15 -3.43 6.16 36.01 0.22 -3.21 16 9 S -0.06 -1.79 20.57 -107.50 -2.21 -4.00 16 10 C -0.53 -16.03 9.50 30.94 0.29 -15.74 16 11 H 0.07 2.11 7.80 -52.49 -0.41 1.70 16 12 C 0.07 2.16 5.49 -17.43 -0.10 2.06 16 13 N -0.87 -27.17 13.22 55.49 0.73 -26.44 16 14 Si 0.92 22.43 29.55 -169.99 -5.02 17.41 16 15 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 N -0.68 -5.25 5.68 -107.99 -0.61 -5.86 16 19 C 0.09 0.57 5.04 -4.97 -0.03 0.55 16 20 C -0.04 -0.26 5.43 -104.21 -0.57 -0.83 16 21 C -0.11 -0.52 9.66 -39.64 -0.38 -0.90 16 22 C -0.09 -0.38 10.04 -39.49 -0.40 -0.78 16 23 C -0.12 -0.55 10.03 -39.64 -0.40 -0.95 16 24 C -0.07 -0.47 9.76 -39.17 -0.38 -0.85 16 25 C 0.00 -0.01 5.73 -106.93 -0.61 -0.62 16 26 C 0.25 2.78 14.00 -22.44 -0.31 2.46 16 27 N -0.40 -5.67 18.54 41.88 0.78 -4.89 16 28 H 0.06 0.37 8.13 -51.93 -0.42 -0.05 16 29 H 0.06 0.28 7.45 -51.93 -0.39 -0.11 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.40 5.99 8.14 -40.82 -0.33 5.66 16 34 H 0.09 1.92 8.14 -51.92 -0.42 1.50 16 35 H 0.09 1.93 8.14 -51.92 -0.42 1.50 16 36 H 0.27 7.71 8.31 -40.82 -0.34 7.37 16 37 H 0.35 2.41 8.46 -39.29 -0.33 2.08 16 38 H 0.05 0.22 7.30 -51.93 -0.38 -0.16 16 39 H 0.08 0.62 7.39 -51.93 -0.38 0.24 16 40 H 0.13 0.33 8.04 -52.49 -0.42 -0.09 16 41 H 0.13 0.25 8.06 -52.49 -0.42 -0.18 16 42 H 0.13 0.35 8.06 -52.48 -0.42 -0.08 16 43 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 LS Contribution 389.80 15.07 5.87 5.87 Total: -1.00 -37.39 389.80 -9.30 -46.69 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -5.99 Total: 2.19 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: -2.61 Total: -6.44 kcal Atomic # 7 Polarization: -49.56 SS G_CDS: 0.57 Total: -48.99 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: 0.09 Total: -12.73 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Atomic # 16 Polarization: -1.79 SS G_CDS: -2.21 Total: -4.00 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -37.39 -9.30 -46.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491397489.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.883 kcal (2) G-P(sol) polarization free energy of solvation -37.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds