Wall clock time and date at job start Tue Mar 31 2020 18:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47115 * 2 1 4 4 C 1.52998 * 109.47396 * 239.99718 * 2 1 3 5 5 N 1.46495 * 109.47161 * 184.99926 * 4 2 1 6 6 C 1.34780 * 120.00054 * 179.97438 * 5 4 2 7 7 O 1.21276 * 119.99893 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.99885 * 180.02562 * 6 5 4 9 9 S 1.81003 * 109.46974 * 179.97438 * 8 6 5 10 10 C 1.76199 * 100.00176 * 179.97438 * 9 8 6 11 11 H 1.07998 * 119.99967 * 0.02562 * 10 9 8 12 12 C 1.38793 * 119.99732 * 179.97438 * 10 9 8 13 13 N 1.31629 * 120.00716 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 119.99750 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47093 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.46941 * 119.99859 * 14 12 10 17 17 H 1.48501 * 109.47221 * 240.00092 * 14 12 10 18 18 N 1.46901 * 109.47164 * 119.99611 * 2 1 3 19 19 C 1.46904 * 110.99871 * 275.00144 * 18 2 1 20 20 C 1.50699 * 109.46846 * 179.97438 * 19 18 2 21 21 C 1.37974 * 120.07718 * 259.99924 * 20 19 18 22 22 C 1.38345 * 120.15009 * 179.97438 * 21 20 19 23 23 C 1.38378 * 120.30569 * 359.97438 * 22 21 20 24 24 C 1.37928 * 120.15554 * 359.97438 * 23 22 21 25 25 C 1.39609 * 120.07867 * 79.97669 * 20 19 18 26 26 C 1.43198 * 120.14920 * 0.02562 * 25 20 19 27 27 N 4.52641 * 154.56356 * 87.62964 * 2 1 3 28 28 H 1.08996 * 109.47227 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47524 * 300.00461 * 1 2 3 30 30 H 1.09000 * 109.47546 * 60.00346 * 1 2 3 31 31 H 1.09002 * 109.46846 * 304.99660 * 4 2 1 32 32 H 1.08996 * 109.47055 * 65.00004 * 4 2 1 33 33 H 0.96998 * 120.00445 * 359.97438 * 5 4 2 34 34 H 1.09002 * 109.46934 * 299.99463 * 8 6 5 35 35 H 1.08996 * 109.47330 * 60.00030 * 8 6 5 36 36 H 0.96995 * 120.00187 * 179.97438 * 13 12 10 37 37 H 1.00898 * 110.99863 * 38.95372 * 18 2 1 38 38 H 1.09004 * 109.46964 * 60.00217 * 19 18 2 39 39 H 1.08997 * 109.47382 * 299.99588 * 19 18 2 40 40 H 1.07998 * 119.92213 * 0.25376 * 21 20 19 41 41 H 1.07998 * 119.84620 * 179.97438 * 22 21 20 42 42 H 1.08004 * 119.92473 * 179.97438 * 23 22 21 43 43 H 1.07991 * 120.07970 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8264 -1.1904 6 6 4.1730 -1.4292 -2.1905 7 8 3.5699 -1.8851 -3.1388 8 6 5.6749 -1.5378 -2.1298 9 16 6.2782 -2.3923 -3.6070 10 6 8.0100 -2.3791 -3.2823 11 1 8.3862 -1.9258 -2.3771 12 6 8.8904 -2.9522 -4.1893 13 7 8.4318 -3.5060 -5.2919 14 14 10.7265 -2.9376 -3.8455 15 1 10.9820 -2.2593 -2.5494 16 1 11.2293 -4.3334 -3.7818 17 1 11.4279 -2.2078 -4.9321 18 7 2.0196 -0.6924 1.1995 19 6 2.0824 0.2228 2.3469 20 6 2.5872 -0.5216 3.5560 21 6 1.6992 -0.9735 4.5104 22 6 2.1610 -1.6574 5.6208 23 6 3.5149 -1.8937 5.7822 24 6 4.4136 -1.4484 4.8354 25 6 3.9546 -0.7559 3.7129 26 6 4.8820 -0.2897 2.7265 27 7 5.6176 0.0804 1.9425 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.6054 -1.7199 -1.2950 32 1 1.7517 -0.1584 -2.1369 33 1 3.9824 -0.4621 -0.4319 34 1 6.1098 -0.5393 -2.0842 35 1 5.9629 -2.1006 -1.2419 36 1 9.0472 -3.9062 -5.9259 37 1 1.4495 -1.4978 1.4101 38 1 1.0869 0.6165 2.5525 39 1 2.7588 1.0463 2.1182 40 1 0.6408 -0.7968 4.3881 41 1 1.4616 -2.0086 6.3650 42 1 3.8687 -2.4279 6.6517 43 1 5.4699 -1.6338 4.9625 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491397489.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:34 Heat of formation + Delta-G solvation = -13.206317 kcal Electronic energy + Delta-G solvation = -24923.381569 eV Core-core repulsion = 21286.419515 eV Total energy + Delta-G solvation = -3636.962053 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.80137 -40.47922 -38.35607 -37.34803 -35.36871 -34.63281 -33.43586 -32.17082 -31.25179 -30.25111 -27.78211 -26.88959 -26.05695 -24.52429 -22.41087 -22.09718 -21.65568 -19.85919 -19.60792 -17.83324 -17.61018 -17.05050 -16.92937 -16.78254 -16.71796 -16.19630 -15.94625 -15.52083 -15.23713 -14.98906 -14.89796 -14.53433 -14.33949 -14.21785 -14.02423 -13.78813 -13.73777 -13.52271 -13.26091 -13.21262 -13.15643 -13.04686 -12.93945 -12.70439 -12.56887 -12.14250 -11.99298 -11.80760 -11.73794 -11.19733 -11.00527 -10.35990 -10.09365 -9.85508 -9.75794 -9.39756 -8.71890 -8.39096 -6.17713 -0.11001 0.41748 1.22128 1.37335 1.41474 1.54937 1.56498 1.75378 2.08654 2.22438 2.30675 2.85667 2.94216 2.99683 3.25656 3.31445 3.74384 3.78006 3.91185 3.95851 4.09452 4.17678 4.21007 4.30110 4.39411 4.41185 4.52698 4.61539 4.62633 4.65002 4.77042 4.88942 4.90302 4.97051 5.09651 5.27353 5.36975 5.43157 5.45967 5.50235 5.57619 5.92357 6.00126 6.15716 6.42386 6.47321 6.58769 7.01659 7.20032 8.70680 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011873 B = 0.002801 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.668009 B = 9994.500254 C =11883.795929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.084 3.916 3 H 0.085 0.915 4 C 0.127 3.873 5 N -0.703 5.703 6 C 0.531 3.469 7 O -0.564 6.564 8 C -0.127 4.127 9 S -0.137 6.137 10 C -0.550 4.550 11 H 0.074 0.926 12 C 0.015 3.985 13 N -0.908 5.908 14 Si 1.000 3.000 15 H -0.263 1.263 16 H -0.268 1.268 17 H -0.269 1.269 18 N -0.693 5.693 19 C 0.094 3.906 20 C -0.043 4.043 21 C -0.110 4.110 22 C -0.085 4.085 23 C -0.119 4.119 24 C -0.082 4.082 25 C -0.033 4.033 26 C 0.272 3.728 27 N -0.467 5.467 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.409 0.591 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.273 0.727 37 H 0.356 0.644 38 H 0.077 0.923 39 H 0.065 0.935 40 H 0.157 0.843 41 H 0.159 0.841 42 H 0.155 0.845 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.991 7.907 29.571 36.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.026 4.026 3 H 0.104 0.896 4 C 0.003 3.997 5 N -0.355 5.355 6 C 0.317 3.683 7 O -0.443 6.443 8 C -0.279 4.279 9 S 0.090 5.910 10 C -0.698 4.698 11 H 0.093 0.907 12 C -0.189 4.189 13 N -0.545 5.545 14 Si 0.821 3.179 15 H -0.187 1.187 16 H -0.193 1.193 17 H -0.194 1.194 18 N -0.326 5.326 19 C -0.034 4.034 20 C -0.046 4.046 21 C -0.128 4.128 22 C -0.103 4.103 23 C -0.137 4.137 24 C -0.103 4.103 25 C -0.037 4.037 26 C -0.042 4.042 27 N -0.143 5.143 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.245 0.755 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.082 0.918 37 H 0.176 0.824 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.175 0.825 41 H 0.176 0.824 42 H 0.172 0.828 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -19.184 7.747 26.468 33.594 hybrid contribution 1.133 0.484 1.428 1.886 sum -18.051 8.231 27.895 34.231 Atomic orbital electron populations 1.22326 0.93460 1.03373 1.03732 1.21685 0.95065 0.97481 0.88337 0.89638 1.21547 0.78786 1.00964 0.98393 1.45683 1.08326 1.58969 1.22526 1.19945 0.88616 0.77376 0.82392 1.90659 1.70241 1.48758 1.34675 1.23319 0.95586 1.04949 1.04007 1.85365 1.05665 1.74776 1.25158 1.23198 0.91858 1.44612 1.10129 0.90745 1.26125 1.05280 0.93613 0.93927 1.70174 1.37409 1.36313 1.10585 0.84901 0.75725 0.78561 0.78709 1.18685 1.19346 1.19437 1.60412 1.58850 1.10170 1.03197 1.20975 1.01203 0.93937 0.87251 1.19879 0.90930 0.97584 0.96235 1.21311 1.00462 0.97741 0.93324 1.21780 0.96010 0.95154 0.97383 1.21438 0.93338 0.99596 0.99349 1.21404 1.01361 0.95322 0.92203 1.16096 0.90350 1.04418 0.92845 1.26181 0.92531 0.92799 0.92729 1.81381 1.11154 1.10593 1.11132 0.91487 0.90152 0.91429 0.92198 0.91799 0.75518 0.88605 0.88809 0.91784 0.82426 0.90458 0.91653 0.82550 0.82377 0.82778 0.84862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.55 9.16 71.98 0.66 -0.89 16 2 C 0.08 1.24 2.75 44.91 0.12 1.37 16 3 H 0.09 1.28 7.80 -2.38 -0.02 1.26 16 4 C 0.13 3.10 5.37 86.38 0.46 3.57 16 5 N -0.70 -22.39 5.39 -463.07 -2.50 -24.89 16 6 C 0.53 22.89 7.85 87.66 0.69 23.58 16 7 O -0.56 -28.52 15.86 -3.02 -0.05 -28.56 16 8 C -0.13 -6.02 6.16 71.24 0.44 -5.58 16 9 S -0.14 -8.23 20.57 -56.49 -1.16 -9.39 16 10 C -0.55 -33.95 9.50 67.95 0.65 -33.31 16 11 H 0.07 4.41 7.80 -2.91 -0.02 4.39 16 12 C 0.02 0.93 5.49 84.86 0.47 1.40 16 13 N -0.91 -57.90 13.22 21.65 0.29 -57.61 16 14 Si 1.00 46.22 29.55 68.60 2.03 48.24 16 15 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 16 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 17 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 18 N -0.69 -9.59 5.68 -495.57 -2.81 -12.40 16 19 C 0.09 0.99 5.04 85.56 0.43 1.42 16 20 C -0.04 -0.46 5.43 -19.60 -0.11 -0.57 16 21 C -0.11 -0.58 9.66 22.23 0.21 -0.36 16 22 C -0.08 -0.35 10.04 22.33 0.22 -0.12 16 23 C -0.12 -0.77 10.03 22.23 0.22 -0.55 16 24 C -0.08 -0.97 9.76 22.54 0.22 -0.75 16 25 C -0.03 -0.51 5.73 -21.36 -0.12 -0.64 16 26 C 0.27 6.30 14.00 88.32 1.24 7.54 16 27 N -0.47 -13.95 18.54 19.02 0.35 -13.59 16 28 H 0.07 0.60 8.13 -2.39 -0.02 0.58 16 29 H 0.08 0.43 7.45 -2.39 -0.02 0.42 16 30 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.41 12.27 8.14 -92.71 -0.75 11.51 16 34 H 0.10 4.33 8.14 -2.39 -0.02 4.31 16 35 H 0.09 4.27 8.14 -2.40 -0.02 4.25 16 36 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 37 H 0.36 4.10 8.46 -89.70 -0.76 3.34 16 38 H 0.08 0.39 7.30 -2.39 -0.02 0.38 16 39 H 0.07 0.93 7.39 -2.39 -0.02 0.91 16 40 H 0.16 0.00 8.04 -2.91 -0.02 -0.02 16 41 H 0.16 -0.23 8.06 -2.91 -0.02 -0.25 16 42 H 0.15 0.29 8.06 -2.91 -0.02 0.26 16 43 H 0.13 1.45 8.06 -2.92 -0.02 1.42 16 Total: -1.00 -85.09 389.80 1.48 -83.61 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: -0.47 Total: 18.49 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: 5.81 Total: -3.89 kcal Atomic # 7 Polarization: -103.82 SS G_CDS: -4.67 Total: -108.50 kcal Atomic # 8 Polarization: -28.52 SS G_CDS: -0.05 Total: -28.56 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.24 kcal Atomic # 16 Polarization: -8.23 SS G_CDS: -1.16 Total: -9.39 kcal Total: -85.09 1.48 -83.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491397489.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.399 kcal (2) G-P(sol) polarization free energy of solvation -85.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds