Wall clock time and date at job start Tue Mar 31 2020 18:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47169 * 2 1 4 4 C 1.52998 * 109.47273 * 120.00556 * 2 1 3 5 5 N 1.46504 * 109.47306 * 174.99832 * 4 2 1 6 6 C 1.34773 * 119.99789 * 179.97438 * 5 4 2 7 7 O 1.21277 * 120.00642 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99708 * 179.97438 * 6 5 4 9 9 S 1.80992 * 109.47085 * 180.02562 * 8 6 5 10 10 C 1.76200 * 100.00109 * 180.02562 * 9 8 6 11 11 H 1.08004 * 119.99948 * 359.97438 * 10 9 8 12 12 C 1.38798 * 120.00292 * 180.02562 * 10 9 8 13 13 N 1.31629 * 119.99776 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 120.00208 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46888 * 59.99754 * 14 12 10 16 16 H 1.48496 * 109.47035 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.46923 * 299.99872 * 14 12 10 18 18 N 1.46903 * 109.46786 * 240.00242 * 2 1 3 19 19 C 1.46899 * 111.00125 * 84.99744 * 18 2 1 20 20 C 1.50700 * 109.47136 * 179.97438 * 19 18 2 21 21 C 1.37972 * 120.07925 * 259.95895 * 20 19 18 22 22 C 1.38340 * 120.14948 * 180.02562 * 21 20 19 23 23 C 1.38385 * 120.30600 * 0.02562 * 22 21 20 24 24 C 1.37924 * 120.14965 * 0.02562 * 23 22 21 25 25 C 1.39617 * 120.07542 * 80.00272 * 20 19 18 26 26 C 1.43204 * 120.14815 * 359.95497 * 25 20 19 27 27 N 4.52638 * 59.89432 * 246.60655 * 2 1 3 28 28 H 1.08993 * 109.47169 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46941 * 299.99755 * 1 2 3 30 30 H 1.09003 * 109.47124 * 59.99490 * 1 2 3 31 31 H 1.09004 * 109.46969 * 294.99276 * 4 2 1 32 32 H 1.08996 * 109.47501 * 54.99139 * 4 2 1 33 33 H 0.96995 * 119.99707 * 359.97438 * 5 4 2 34 34 H 1.09004 * 109.46723 * 300.00049 * 8 6 5 35 35 H 1.08995 * 109.46992 * 60.00032 * 8 6 5 36 36 H 0.97004 * 120.00076 * 179.97438 * 13 12 10 37 37 H 1.00903 * 111.00062 * 321.04182 * 18 2 1 38 38 H 1.09001 * 109.46606 * 60.00490 * 19 18 2 39 39 H 1.08992 * 109.47210 * 300.00480 * 19 18 2 40 40 H 1.08004 * 119.92250 * 0.04741 * 21 20 19 41 41 H 1.07996 * 119.84478 * 180.27649 * 22 21 20 42 42 H 1.07999 * 119.92033 * 179.97438 * 23 22 21 43 43 H 1.08010 * 120.07147 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 3.5001 -0.8265 1.1904 6 6 4.1731 -1.4285 2.1910 7 8 3.5701 -1.8836 3.1397 8 6 5.6750 -1.5372 2.1303 9 16 6.2783 -2.3904 3.6081 10 6 8.0101 -2.3775 3.2833 11 1 8.3863 -1.9250 2.3777 12 6 8.8907 -2.9498 4.1908 13 7 8.4321 -3.5018 5.2942 14 14 10.7266 -2.9367 3.8461 15 1 11.1976 -1.5335 3.7252 16 1 11.4444 -3.6050 4.9611 17 1 10.9973 -3.6607 2.5780 18 7 2.0196 -0.6925 -1.1995 19 6 2.0823 0.2226 -2.3469 20 6 2.5883 -0.5215 -3.5558 21 6 3.9092 -0.4047 -3.9369 22 6 4.3751 -1.0867 -5.0467 23 6 3.5211 -1.8896 -5.7823 24 6 2.1980 -2.0145 -5.4132 25 6 1.7212 -1.3299 -4.2933 26 6 0.3490 -1.4558 -3.9036 27 7 -0.7404 -1.5547 -3.5939 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.7518 -0.1584 2.1369 32 1 1.6054 -1.7198 1.2951 33 1 3.9824 -0.4629 0.4315 34 1 5.9629 -2.1008 1.2428 35 1 6.1099 -0.5388 2.0837 36 1 9.0475 -3.9021 5.9283 37 1 1.4495 -1.4979 -1.4101 38 1 2.7588 1.0461 -2.1183 39 1 1.0870 0.6164 -2.5525 40 1 4.5810 0.2203 -3.3672 41 1 5.4110 -0.9953 -5.3379 42 1 3.8913 -2.4189 -6.6478 43 1 1.5325 -2.6411 -5.9885 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491397493.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:39 Heat of formation + Delta-G solvation = 12.221684 kcal Electronic energy + Delta-G solvation = -24614.276790 eV Core-core repulsion = 20978.417378 eV Total energy + Delta-G solvation = -3635.859413 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.25456 -39.13869 -37.52179 -36.79612 -34.25883 -32.64915 -32.38352 -31.77572 -30.15600 -29.15653 -26.18385 -25.58289 -25.20562 -24.05875 -22.06614 -21.26052 -20.10869 -19.16271 -17.78314 -16.83468 -16.30797 -16.17421 -16.07929 -15.95170 -15.10901 -14.91283 -14.76803 -14.59808 -14.36391 -14.12985 -13.88573 -13.57843 -13.35190 -13.28363 -13.13601 -12.82995 -12.79077 -12.66704 -12.57938 -12.39927 -12.09832 -11.83041 -11.66201 -11.40681 -11.17183 -11.00838 -10.99948 -10.73208 -9.77622 -9.45271 -9.40253 -9.28097 -9.02088 -8.84605 -8.68063 -8.17148 -6.44137 -6.17190 -3.87045 0.28770 0.80766 2.22066 2.52089 3.12425 3.23929 3.26099 3.29494 3.30692 3.36745 3.41686 3.77186 3.91063 4.21289 4.24932 4.26133 4.49815 4.56696 4.70992 4.77083 4.87316 4.94162 5.03712 5.07495 5.17622 5.27081 5.29127 5.34012 5.42142 5.45934 5.65060 5.70388 5.75999 5.77475 5.88933 5.94442 5.97084 5.99488 6.23053 6.30912 6.51024 6.75813 6.92523 7.03689 7.63341 7.93635 8.39336 8.77959 9.27805 10.90206 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012331 B = 0.002467 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.178518 B =11346.528970 C =13118.646345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.072 3.928 3 H 0.088 0.912 4 C 0.135 3.865 5 N -0.724 5.724 6 C 0.529 3.471 7 O -0.525 6.525 8 C -0.151 4.151 9 S -0.062 6.062 10 C -0.534 4.534 11 H 0.072 0.928 12 C 0.073 3.927 13 N -0.868 5.868 14 Si 0.918 3.082 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 N -0.674 5.674 19 C 0.088 3.912 20 C -0.032 4.032 21 C -0.100 4.100 22 C -0.087 4.087 23 C -0.121 4.121 24 C -0.071 4.071 25 C -0.029 4.029 26 C 0.249 3.751 27 N -0.412 5.412 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.403 0.597 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.268 0.732 37 H 0.344 0.656 38 H 0.093 0.907 39 H 0.042 0.958 40 H 0.137 0.863 41 H 0.133 0.867 42 H 0.133 0.867 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.161 9.320 -24.753 29.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.038 4.038 3 H 0.106 0.894 4 C 0.010 3.990 5 N -0.378 5.378 6 C 0.315 3.685 7 O -0.400 6.400 8 C -0.301 4.301 9 S 0.164 5.836 10 C -0.683 4.683 11 H 0.090 0.910 12 C -0.136 4.136 13 N -0.504 5.504 14 Si 0.744 3.256 15 H -0.200 1.200 16 H -0.209 1.209 17 H -0.199 1.199 18 N -0.306 5.306 19 C -0.041 4.041 20 C -0.035 4.035 21 C -0.118 4.118 22 C -0.105 4.105 23 C -0.139 4.139 24 C -0.091 4.091 25 C -0.033 4.033 26 C -0.066 4.066 27 N -0.087 5.087 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.237 0.763 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.078 0.922 37 H 0.163 0.837 38 H 0.111 0.889 39 H 0.060 0.940 40 H 0.155 0.845 41 H 0.150 0.850 42 H 0.151 0.849 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -14.174 8.399 -22.329 27.750 hybrid contribution 1.522 0.725 -2.106 2.698 sum -12.653 9.125 -24.436 28.991 Atomic orbital electron populations 1.22407 0.96017 1.02847 1.02670 1.21872 0.93411 0.98451 0.90085 0.89390 1.21211 0.81458 1.00562 0.95796 1.45759 1.06608 1.61430 1.24037 1.20281 0.89443 0.76940 0.81810 1.90692 1.69928 1.46404 1.32954 1.23501 0.93821 1.05418 1.07396 1.85393 1.04419 1.73253 1.20488 1.22833 0.91641 1.44203 1.09584 0.91017 1.24990 0.99521 0.94620 0.94492 1.70014 1.35452 1.35495 1.09411 0.86237 0.82893 0.78424 0.78006 1.19975 1.20865 1.19945 1.60622 1.57920 1.09247 1.02787 1.21047 1.00120 0.94993 0.87896 1.19810 0.93439 0.95430 0.94870 1.21056 0.94143 0.99829 0.96778 1.21479 1.00251 0.94657 0.94153 1.21140 0.92958 0.99230 1.00552 1.21160 0.96259 0.97196 0.94512 1.15931 0.85772 1.02947 0.98660 1.25804 0.92885 0.93990 0.93918 1.81335 1.11579 1.07920 1.07915 0.91988 0.91189 0.92525 0.91314 0.91861 0.76285 0.89286 0.89444 0.92186 0.83676 0.88883 0.93997 0.84514 0.84951 0.84890 0.85052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.40 9.16 37.16 0.34 -1.06 16 2 C 0.07 0.59 2.75 -67.71 -0.19 0.40 16 3 H 0.09 0.63 7.80 -51.93 -0.40 0.23 16 4 C 0.13 1.59 5.37 -4.04 -0.02 1.56 16 5 N -0.72 -9.88 5.39 -60.29 -0.32 -10.20 16 6 C 0.53 10.12 7.85 -10.98 -0.09 10.04 16 7 O -0.52 -12.25 15.86 5.56 0.09 -12.16 16 8 C -0.15 -3.09 6.16 36.01 0.22 -2.87 16 9 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 10 C -0.53 -15.31 9.50 30.94 0.29 -15.02 16 11 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 12 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 13 N -0.87 -26.39 13.22 55.49 0.73 -25.66 16 14 Si 0.92 21.43 29.55 -169.99 -5.02 16.41 16 15 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 17 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 18 N -0.67 -5.37 5.68 -108.00 -0.61 -5.98 16 19 C 0.09 0.56 5.08 -4.98 -0.03 0.53 16 20 C -0.03 -0.21 5.43 -104.20 -0.57 -0.77 16 21 C -0.10 -0.54 9.66 -39.64 -0.38 -0.93 16 22 C -0.09 -0.41 10.04 -39.49 -0.40 -0.81 16 23 C -0.12 -0.55 10.03 -39.64 -0.40 -0.94 16 24 C -0.07 -0.39 9.76 -39.17 -0.38 -0.77 16 25 C -0.03 -0.20 5.73 -106.93 -0.61 -0.81 16 26 C 0.25 2.18 13.32 -22.44 -0.30 1.88 16 27 N -0.41 -4.48 18.54 41.87 0.78 -3.71 16 28 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.43 7.45 -51.93 -0.39 0.04 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.40 4.52 8.14 -40.82 -0.33 4.19 16 34 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 35 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 36 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 37 H 0.34 3.08 7.76 -39.29 -0.30 2.78 16 38 H 0.09 0.47 7.92 -51.93 -0.41 0.06 16 39 H 0.04 0.28 6.77 -51.93 -0.35 -0.07 16 40 H 0.14 0.57 8.03 -52.48 -0.42 0.15 16 41 H 0.13 0.39 8.06 -52.49 -0.42 -0.03 16 42 H 0.13 0.33 8.06 -52.49 -0.42 -0.09 16 43 H 0.13 0.52 8.06 -52.48 -0.42 0.10 16 LS Contribution 388.46 15.07 5.85 5.85 Total: -1.00 -35.74 388.46 -9.28 -45.02 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -5.96 Total: 1.92 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -2.60 Total: -7.56 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: 0.57 Total: -45.55 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.09 Total: -12.16 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.74 -9.28 -45.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491397493.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.243 kcal (2) G-P(sol) polarization free energy of solvation -35.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds