Wall clock time and date at job start Tue Mar 31 2020 18:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47169 * 2 1 4 4 C 1.52998 * 109.47273 * 120.00556 * 2 1 3 5 5 N 1.46504 * 109.47306 * 174.99832 * 4 2 1 6 6 C 1.34773 * 119.99789 * 179.97438 * 5 4 2 7 7 O 1.21277 * 120.00642 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99708 * 179.97438 * 6 5 4 9 9 S 1.80992 * 109.47085 * 180.02562 * 8 6 5 10 10 C 1.76200 * 100.00109 * 180.02562 * 9 8 6 11 11 H 1.08004 * 119.99948 * 359.97438 * 10 9 8 12 12 C 1.38798 * 120.00292 * 180.02562 * 10 9 8 13 13 N 1.31629 * 119.99776 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 120.00208 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46888 * 59.99754 * 14 12 10 16 16 H 1.48496 * 109.47035 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.46923 * 299.99872 * 14 12 10 18 18 N 1.46903 * 109.46786 * 240.00242 * 2 1 3 19 19 C 1.46899 * 111.00125 * 84.99744 * 18 2 1 20 20 C 1.50700 * 109.47136 * 179.97438 * 19 18 2 21 21 C 1.37972 * 120.07925 * 259.95895 * 20 19 18 22 22 C 1.38340 * 120.14948 * 180.02562 * 21 20 19 23 23 C 1.38385 * 120.30600 * 0.02562 * 22 21 20 24 24 C 1.37924 * 120.14965 * 0.02562 * 23 22 21 25 25 C 1.39617 * 120.07542 * 80.00272 * 20 19 18 26 26 C 1.43204 * 120.14815 * 359.95497 * 25 20 19 27 27 N 4.52638 * 59.89432 * 246.60655 * 2 1 3 28 28 H 1.08993 * 109.47169 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46941 * 299.99755 * 1 2 3 30 30 H 1.09003 * 109.47124 * 59.99490 * 1 2 3 31 31 H 1.09004 * 109.46969 * 294.99276 * 4 2 1 32 32 H 1.08996 * 109.47501 * 54.99139 * 4 2 1 33 33 H 0.96995 * 119.99707 * 359.97438 * 5 4 2 34 34 H 1.09004 * 109.46723 * 300.00049 * 8 6 5 35 35 H 1.08995 * 109.46992 * 60.00032 * 8 6 5 36 36 H 0.97004 * 120.00076 * 179.97438 * 13 12 10 37 37 H 1.00903 * 111.00062 * 321.04182 * 18 2 1 38 38 H 1.09001 * 109.46606 * 60.00490 * 19 18 2 39 39 H 1.08992 * 109.47210 * 300.00480 * 19 18 2 40 40 H 1.08004 * 119.92250 * 0.04741 * 21 20 19 41 41 H 1.07996 * 119.84478 * 180.27649 * 22 21 20 42 42 H 1.07999 * 119.92033 * 179.97438 * 23 22 21 43 43 H 1.08010 * 120.07147 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 3.5001 -0.8265 1.1904 6 6 4.1731 -1.4285 2.1910 7 8 3.5701 -1.8836 3.1397 8 6 5.6750 -1.5372 2.1303 9 16 6.2783 -2.3904 3.6081 10 6 8.0101 -2.3775 3.2833 11 1 8.3863 -1.9250 2.3777 12 6 8.8907 -2.9498 4.1908 13 7 8.4321 -3.5018 5.2942 14 14 10.7266 -2.9367 3.8461 15 1 11.1976 -1.5335 3.7252 16 1 11.4444 -3.6050 4.9611 17 1 10.9973 -3.6607 2.5780 18 7 2.0196 -0.6925 -1.1995 19 6 2.0823 0.2226 -2.3469 20 6 2.5883 -0.5215 -3.5558 21 6 3.9092 -0.4047 -3.9369 22 6 4.3751 -1.0867 -5.0467 23 6 3.5211 -1.8896 -5.7823 24 6 2.1980 -2.0145 -5.4132 25 6 1.7212 -1.3299 -4.2933 26 6 0.3490 -1.4558 -3.9036 27 7 -0.7404 -1.5547 -3.5939 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.7518 -0.1584 2.1369 32 1 1.6054 -1.7198 1.2951 33 1 3.9824 -0.4629 0.4315 34 1 5.9629 -2.1008 1.2428 35 1 6.1099 -0.5388 2.0837 36 1 9.0475 -3.9021 5.9283 37 1 1.4495 -1.4979 -1.4101 38 1 2.7588 1.0461 -2.1183 39 1 1.0870 0.6164 -2.5525 40 1 4.5810 0.2203 -3.3672 41 1 5.4110 -0.9953 -5.3379 42 1 3.8913 -2.4189 -6.6478 43 1 1.5325 -2.6411 -5.9885 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491397493.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:38 Heat of formation + Delta-G solvation = -12.347179 kcal Electronic energy + Delta-G solvation = -24615.342176 eV Core-core repulsion = 20978.417378 eV Total energy + Delta-G solvation = -3636.924798 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.78766 -40.44593 -38.35206 -37.48195 -35.30507 -34.54607 -33.44720 -32.20260 -31.16515 -30.25450 -27.70317 -26.91179 -26.09095 -24.50761 -22.51096 -22.04017 -21.56860 -19.78345 -19.61601 -17.74129 -17.54838 -17.02275 -16.84785 -16.82121 -16.66635 -16.17578 -15.91734 -15.54305 -15.21001 -15.05755 -14.88966 -14.48855 -14.35925 -14.14894 -14.11559 -13.90663 -13.75674 -13.60675 -13.21949 -13.14343 -13.12743 -13.02934 -12.82751 -12.70634 -12.56399 -12.21336 -12.03788 -11.80535 -11.69734 -11.09148 -10.88947 -10.22630 -9.99493 -9.85310 -9.84239 -9.45021 -8.62621 -8.30679 -6.08668 -0.17099 0.42621 1.31195 1.47063 1.50869 1.56591 1.60817 1.71565 1.96528 2.30764 2.40191 2.79473 2.86500 3.03254 3.25701 3.38674 3.72401 3.76279 3.89215 3.99091 4.14113 4.17193 4.26104 4.36870 4.39564 4.50796 4.56647 4.57437 4.60376 4.65727 4.74395 4.82974 4.88904 4.91066 5.07994 5.13483 5.38984 5.45233 5.50708 5.54046 5.59785 5.88653 5.97789 6.18890 6.23484 6.40329 6.67316 7.10281 7.37568 8.78362 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012331 B = 0.002467 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.178518 B =11346.528970 C =13118.646345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.085 3.915 3 H 0.108 0.892 4 C 0.134 3.866 5 N -0.695 5.695 6 C 0.529 3.471 7 O -0.575 6.575 8 C -0.125 4.125 9 S -0.157 6.157 10 C -0.544 4.544 11 H 0.084 0.916 12 C 0.011 3.989 13 N -0.913 5.913 14 Si 0.999 3.001 15 H -0.261 1.261 16 H -0.281 1.281 17 H -0.261 1.261 18 N -0.679 5.679 19 C 0.090 3.910 20 C -0.039 4.039 21 C -0.106 4.106 22 C -0.086 4.086 23 C -0.121 4.121 24 C -0.074 4.074 25 C -0.049 4.049 26 C 0.269 3.731 27 N -0.460 5.460 28 H 0.048 0.952 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.046 0.954 33 H 0.419 0.581 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.270 0.730 37 H 0.337 0.663 38 H 0.111 0.889 39 H 0.037 0.963 40 H 0.151 0.849 41 H 0.153 0.847 42 H 0.156 0.844 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.233 10.745 -27.513 31.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.025 4.025 3 H 0.126 0.874 4 C 0.009 3.991 5 N -0.348 5.348 6 C 0.315 3.685 7 O -0.454 6.454 8 C -0.276 4.276 9 S 0.071 5.929 10 C -0.692 4.692 11 H 0.102 0.898 12 C -0.193 4.193 13 N -0.550 5.550 14 Si 0.821 3.179 15 H -0.185 1.185 16 H -0.206 1.206 17 H -0.185 1.185 18 N -0.310 5.310 19 C -0.038 4.038 20 C -0.042 4.042 21 C -0.124 4.124 22 C -0.105 4.105 23 C -0.139 4.139 24 C -0.095 4.095 25 C -0.053 4.053 26 C -0.045 4.045 27 N -0.136 5.136 28 H 0.068 0.932 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.256 0.744 34 H 0.126 0.874 35 H 0.128 0.872 36 H 0.079 0.921 37 H 0.155 0.845 38 H 0.129 0.871 39 H 0.055 0.945 40 H 0.169 0.831 41 H 0.171 0.829 42 H 0.173 0.827 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -12.264 9.863 -25.155 29.672 hybrid contribution 0.871 0.316 -1.377 1.659 sum -11.392 10.179 -26.532 30.616 Atomic orbital electron populations 1.22340 0.95650 1.02209 1.03152 1.21728 0.93462 0.98701 0.88587 0.87385 1.21345 0.79794 1.00170 0.97788 1.45497 1.07462 1.59095 1.22767 1.20097 0.88945 0.77187 0.82266 1.90682 1.70535 1.48976 1.35196 1.23331 0.94786 1.05648 1.03855 1.85611 1.05939 1.75274 1.26119 1.23178 0.91579 1.44309 1.10126 0.89766 1.26156 1.05308 0.93834 0.94017 1.70192 1.37463 1.36624 1.10706 0.84995 0.75609 0.79120 0.78208 1.18536 1.20602 1.18515 1.60620 1.57601 1.09427 1.03340 1.21098 1.00374 0.95028 0.87295 1.19855 0.93890 0.95573 0.94883 1.21286 0.93807 1.00089 0.97230 1.21812 1.01295 0.93789 0.93565 1.21447 0.92402 0.98976 1.01074 1.21377 0.97072 0.96965 0.94077 1.16087 0.84893 1.04421 0.99872 1.26140 0.93062 0.92623 0.92664 1.81341 1.12971 1.09727 1.09572 0.93241 0.90613 0.92061 0.91672 0.93541 0.74370 0.87389 0.87196 0.92078 0.84487 0.87073 0.94492 0.83091 0.82918 0.82681 0.84052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.55 9.16 71.98 0.66 -1.89 16 2 C 0.09 1.24 2.75 44.91 0.12 1.37 16 3 H 0.11 1.22 7.80 -2.39 -0.02 1.20 16 4 C 0.13 3.02 5.37 86.38 0.46 3.49 16 5 N -0.69 -17.77 5.39 -463.06 -2.50 -20.27 16 6 C 0.53 19.92 7.85 87.66 0.69 20.61 16 7 O -0.57 -27.41 15.86 -3.02 -0.05 -27.45 16 8 C -0.12 -4.98 6.16 71.24 0.44 -4.54 16 9 S -0.16 -8.79 20.57 -56.49 -1.16 -9.95 16 10 C -0.54 -31.06 9.50 67.95 0.65 -30.41 16 11 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 12 C 0.01 0.64 5.49 84.86 0.47 1.11 16 13 N -0.91 -56.49 13.22 21.65 0.29 -56.21 16 14 Si 1.00 43.32 29.55 68.60 2.03 45.35 16 15 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 16 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 17 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 18 N -0.68 -9.67 5.68 -495.59 -2.81 -12.49 16 19 C 0.09 0.95 5.08 85.56 0.43 1.39 16 20 C -0.04 -0.42 5.43 -19.59 -0.11 -0.53 16 21 C -0.11 -0.85 9.66 22.23 0.21 -0.64 16 22 C -0.09 -0.54 10.04 22.33 0.22 -0.32 16 23 C -0.12 -0.77 10.03 22.23 0.22 -0.55 16 24 C -0.07 -0.69 9.76 22.53 0.22 -0.47 16 25 C -0.05 -0.62 5.73 -21.36 -0.12 -0.74 16 26 C 0.27 4.67 13.32 88.32 1.18 5.84 16 27 N -0.46 -10.22 18.54 19.02 0.35 -9.87 16 28 H 0.05 0.85 8.13 -2.39 -0.02 0.83 16 29 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.06 0.87 7.45 -2.39 -0.02 0.85 16 31 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 32 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.42 8.13 8.14 -92.71 -0.75 7.37 16 34 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 35 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 36 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 37 H 0.34 5.79 7.76 -89.69 -0.70 5.10 16 38 H 0.11 0.77 7.92 -2.39 -0.02 0.75 16 39 H 0.04 0.44 6.77 -2.39 -0.02 0.42 16 40 H 0.15 0.73 8.03 -2.91 -0.02 0.71 16 41 H 0.15 0.32 8.06 -2.91 -0.02 0.30 16 42 H 0.16 0.26 8.06 -2.91 -0.02 0.24 16 43 H 0.14 0.93 8.06 -2.91 -0.02 0.90 16 Total: -1.00 -80.40 388.46 1.49 -78.91 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: -0.40 Total: 18.24 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: 5.75 Total: -6.27 kcal Atomic # 7 Polarization: -94.16 SS G_CDS: -4.67 Total: -98.83 kcal Atomic # 8 Polarization: -27.41 SS G_CDS: -0.05 Total: -27.45 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 16 Polarization: -8.79 SS G_CDS: -1.16 Total: -9.95 kcal Total: -80.40 1.49 -78.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491397493.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.561 kcal (2) G-P(sol) polarization free energy of solvation -80.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds