Wall clock time and date at job start Tue Mar 31 2020 17:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47278 * 2 1 4 4 N 1.46498 * 109.47399 * 180.02562 * 3 2 1 5 5 C 1.36944 * 119.99911 * 275.31359 * 4 3 2 6 6 H 1.07996 * 119.99843 * 37.57404 * 5 4 3 7 7 C 1.38804 * 119.99577 * 217.57440 * 5 4 3 8 8 N 1.31618 * 120.00614 * 21.42764 * 7 5 4 9 9 Si 1.86805 * 119.99781 * 201.42122 * 7 5 4 10 10 H 1.48497 * 109.47281 * 60.00113 * 9 7 5 11 11 H 1.48503 * 109.47355 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46948 * 300.00342 * 9 7 5 13 13 C 1.46501 * 120.00116 * 95.30784 * 4 3 2 14 14 C 1.53007 * 109.47061 * 270.00461 * 13 4 3 15 15 N 1.46498 * 109.46823 * 180.02562 * 14 13 4 16 16 C 1.34776 * 119.99931 * 180.02562 * 15 14 13 17 17 O 1.21577 * 119.99890 * 359.97438 * 16 15 14 18 18 C 1.47661 * 120.00263 * 179.97438 * 16 15 14 19 19 C 1.40162 * 119.85388 * 0.02562 * 18 16 15 20 20 C 1.36217 * 120.07813 * 179.97438 * 19 18 16 21 21 C 1.39578 * 120.43546 * 0.02562 * 20 19 18 22 22 S 1.76149 * 131.53682 * 180.02562 * 21 20 19 23 23 C 1.70622 * 90.85991 * 179.97438 * 22 21 20 24 24 N 1.27853 * 111.58533 * 359.97438 * 23 22 21 25 25 C 1.34735 * 117.84259 * 0.02562 * 24 23 22 26 26 C 1.38722 * 119.85556 * 179.97438 * 18 16 15 27 27 H 1.09003 * 109.46751 * 299.99751 * 1 2 3 28 28 H 1.09006 * 109.47462 * 59.99511 * 1 2 3 29 29 H 1.08991 * 109.47306 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46751 * 240.00249 * 2 1 3 31 31 H 1.08992 * 109.47446 * 120.00389 * 2 1 3 32 32 H 1.09003 * 109.47027 * 60.00418 * 3 2 1 33 33 H 1.08999 * 109.47430 * 300.00235 * 3 2 1 34 34 H 0.96991 * 120.00294 * 180.02562 * 8 7 5 35 35 H 1.08994 * 109.47111 * 150.00677 * 13 4 3 36 36 H 1.08995 * 109.47372 * 30.00161 * 13 4 3 37 37 H 1.08994 * 109.46981 * 60.00137 * 14 13 4 38 38 H 1.09003 * 109.46782 * 299.99759 * 14 13 4 39 39 H 0.97001 * 120.00556 * 359.97438 * 15 14 13 40 40 H 1.07997 * 119.95969 * 359.97438 * 19 18 16 41 41 H 1.08004 * 119.78198 * 180.28156 * 20 19 18 42 42 H 1.07997 * 124.20808 * 180.02562 * 23 22 21 43 43 H 1.07990 * 119.97429 * 0.04732 * 26 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1902 1.3325 1.1800 6 1 3.8185 0.6869 1.9618 7 6 5.3624 2.0509 1.3715 8 7 5.6026 3.1237 0.6479 9 14 6.5989 1.4951 2.6566 10 1 7.0675 0.1238 2.3323 11 1 7.7565 2.4253 2.6647 12 1 5.9555 1.4946 3.9950 13 6 4.2370 1.5601 -1.2642 14 6 4.4917 0.1647 -1.8378 15 7 5.2242 0.2823 -3.1010 16 6 5.5605 -0.8258 -3.7907 17 8 5.2563 -1.9229 -3.3642 18 6 6.2983 -0.7073 -5.0642 19 6 6.6479 0.5590 -5.5528 20 6 7.3290 0.6736 -6.7269 21 6 7.6837 -0.4648 -7.4526 22 16 8.5489 -0.6570 -8.9749 23 6 8.3990 -2.3537 -8.8754 24 7 7.7726 -2.7094 -7.8191 25 6 7.3455 -1.7416 -6.9848 26 6 6.6433 -1.8498 -5.7713 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6767 1.9564 -0.8899 34 1 6.4218 3.6254 0.7815 35 1 5.1895 2.0595 -1.0872 36 1 3.6477 2.1421 -1.9727 37 1 3.5392 -0.3348 -2.0148 38 1 5.0811 -0.4174 -1.1292 39 1 5.4666 1.1576 -3.4415 40 1 6.3770 1.4449 -4.9978 41 1 7.6000 1.6515 -7.0967 42 1 8.7859 -3.0416 -9.6126 43 1 6.3715 -2.8230 -5.3901 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493323872.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:36 Heat of formation + Delta-G solvation = 36.493830 kcal Electronic energy + Delta-G solvation = -25245.784849 eV Core-core repulsion = 21610.977956 eV Total energy + Delta-G solvation = -3634.806893 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.81832 -39.32209 -36.90814 -36.44807 -34.37078 -32.90728 -31.51620 -30.95802 -30.30984 -28.08576 -25.58889 -25.48348 -24.35679 -22.95062 -22.35005 -20.98105 -20.38855 -19.97229 -18.98276 -17.40915 -16.65006 -16.54865 -16.38869 -15.33183 -15.23804 -15.04935 -14.68628 -14.39692 -14.31549 -14.19089 -13.95689 -13.68614 -13.24094 -12.96822 -12.84108 -12.73061 -12.33363 -12.06388 -11.59151 -11.52437 -11.34001 -11.20358 -10.95902 -10.74643 -10.48615 -10.42477 -10.38498 -10.11756 -10.02628 -9.93019 -9.86310 -9.61845 -9.11794 -8.65113 -8.51132 -8.40868 -6.65416 -5.86939 -3.45591 0.05963 0.52946 0.87624 1.33507 1.94989 2.85821 3.26342 3.35629 3.40062 3.44575 3.68183 3.77069 4.24951 4.43600 4.66764 4.69073 4.80659 4.93374 5.14826 5.24318 5.44543 5.56022 5.65726 5.74636 5.74979 5.80054 5.95534 6.00298 6.08575 6.16878 6.26309 6.27397 6.40152 6.51226 6.60712 6.64159 6.78669 6.95881 6.97516 7.16557 7.21053 7.48717 7.77417 7.80853 8.42639 8.46127 9.11318 9.73156 10.30847 11.13232 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014285 B = 0.002567 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.586216 B =10904.882349 C =11919.142822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.146 4.146 3 C 0.148 3.852 4 N -0.579 5.579 5 C -0.261 4.261 6 H 0.062 0.938 7 C 0.014 3.986 8 N -0.888 5.888 9 Si 0.896 3.104 10 H -0.281 1.281 11 H -0.290 1.290 12 H -0.280 1.280 13 C 0.137 3.863 14 C 0.096 3.904 15 N -0.711 5.711 16 C 0.551 3.449 17 O -0.539 6.539 18 C -0.114 4.114 19 C -0.069 4.069 20 C -0.077 4.077 21 C -0.164 4.164 22 S 0.098 5.902 23 C 0.063 3.937 24 N -0.457 5.457 25 C 0.067 3.933 26 C 0.000 4.000 27 H 0.049 0.951 28 H 0.046 0.954 29 H 0.043 0.957 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.046 0.954 33 H 0.034 0.966 34 H 0.256 0.744 35 H 0.099 0.901 36 H 0.029 0.971 37 H 0.055 0.945 38 H 0.067 0.933 39 H 0.397 0.603 40 H 0.143 0.857 41 H 0.138 0.862 42 H 0.205 0.795 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.681 -3.430 -19.655 20.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.021 3.979 4 N -0.299 5.299 5 C -0.391 4.391 6 H 0.079 0.921 7 C -0.186 4.186 8 N -0.530 5.530 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.216 1.216 12 H -0.206 1.206 13 C 0.009 3.991 14 C -0.029 4.029 15 N -0.361 5.361 16 C 0.337 3.663 17 O -0.417 6.417 18 C -0.120 4.120 19 C -0.091 4.091 20 C -0.100 4.100 21 C -0.283 4.283 22 S 0.352 5.648 23 C -0.242 4.242 24 N -0.169 5.169 25 C -0.052 4.052 26 C -0.021 4.021 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.117 0.883 36 H 0.048 0.952 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.232 0.768 40 H 0.161 0.839 41 H 0.156 0.844 42 H 0.222 0.778 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 3.967 -4.027 -19.957 20.742 hybrid contribution 0.484 -0.137 1.114 1.222 sum 4.450 -4.164 -18.843 19.804 Atomic orbital electron populations 1.21721 0.97330 1.00423 1.00991 1.22189 0.93827 1.00925 1.01609 1.20942 0.84995 0.92985 0.98940 1.43593 0.99452 1.84796 1.02032 1.18980 1.05686 1.20458 0.93979 0.92081 1.25171 1.00793 0.94506 0.98123 1.69978 1.25722 1.14715 1.42547 0.86475 0.80997 0.78335 0.81649 1.20746 1.21570 1.20608 1.21067 1.00399 0.91092 0.86501 1.22556 0.94934 1.03032 0.82376 1.46058 1.57387 1.08181 1.24517 1.18030 0.79672 0.84997 0.83640 1.90787 1.54987 1.26362 1.69577 1.19918 1.01980 0.93447 0.96652 1.21086 0.95840 0.97090 0.95063 1.19988 0.99001 0.96516 0.94483 1.24076 1.05579 0.98677 0.99984 1.84016 1.55808 1.06126 1.18875 1.28107 0.99781 0.97836 0.98499 1.66201 1.11706 1.35538 1.03415 1.19095 1.02667 0.86408 0.97034 1.20774 0.91991 0.99785 0.89571 0.93202 0.93475 0.93797 0.92916 0.92334 0.93552 0.94741 0.93455 0.88343 0.95244 0.92690 0.91453 0.76846 0.83900 0.84408 0.77827 0.83188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.91 37.16 0.37 -1.79 16 2 C -0.15 -2.63 6.23 -26.73 -0.17 -2.80 16 3 C 0.15 3.01 5.72 -4.04 -0.02 2.98 16 4 N -0.58 -13.67 2.43 -173.24 -0.42 -14.09 16 5 C -0.26 -6.87 9.45 -15.06 -0.14 -7.01 16 6 H 0.06 1.62 7.92 -52.49 -0.42 1.21 16 7 C 0.01 0.38 4.95 -17.43 -0.09 0.30 16 8 N -0.89 -24.18 11.47 55.49 0.64 -23.54 16 9 Si 0.90 21.14 29.60 -169.99 -5.03 16.10 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 C 0.14 2.93 5.45 -4.04 -0.02 2.91 16 14 C 0.10 1.89 6.00 -4.04 -0.02 1.87 16 15 N -0.71 -11.51 5.50 -61.31 -0.34 -11.84 16 16 C 0.55 9.26 7.76 -12.41 -0.10 9.16 16 17 O -0.54 -11.07 16.30 5.30 0.09 -10.98 16 18 C -0.11 -1.54 5.86 -105.15 -0.62 -2.16 16 19 C -0.07 -0.72 9.47 -39.59 -0.37 -1.10 16 20 C -0.08 -0.74 9.99 -39.81 -0.40 -1.14 16 21 C -0.16 -1.76 6.57 -38.37 -0.25 -2.02 16 22 S 0.10 0.76 23.17 -107.50 -2.49 -1.73 16 23 C 0.06 0.52 12.09 51.11 0.62 1.14 16 24 N -0.46 -5.49 10.57 -13.03 -0.14 -5.63 16 25 C 0.07 0.86 6.99 -84.99 -0.59 0.27 16 26 C 0.00 0.01 9.65 -38.51 -0.37 -0.37 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.98 6.64 -51.93 -0.34 0.63 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 33 H 0.03 0.66 7.83 -51.93 -0.41 0.25 16 34 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 35 H 0.10 2.36 5.52 -51.93 -0.29 2.08 16 36 H 0.03 0.58 7.86 -51.93 -0.41 0.17 16 37 H 0.05 1.11 6.64 -51.93 -0.34 0.76 16 38 H 0.07 1.53 8.14 -51.93 -0.42 1.10 16 39 H 0.40 5.25 6.47 -40.82 -0.26 4.98 16 40 H 0.14 1.19 6.37 -52.49 -0.33 0.85 16 41 H 0.14 0.93 8.06 -52.48 -0.42 0.51 16 42 H 0.21 0.84 8.06 -52.49 -0.42 0.42 16 43 H 0.15 2.16 7.60 -52.49 -0.40 1.76 16 LS Contribution 372.53 15.07 5.61 5.61 Total: -1.00 -31.68 372.53 -9.98 -41.66 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -5.72 Total: 4.18 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: -2.18 Total: 0.26 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: -0.26 Total: -55.10 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.09 Total: -10.98 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.03 Total: 16.10 kcal Atomic # 16 Polarization: 0.76 SS G_CDS: -2.49 Total: -1.73 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.68 -9.98 -41.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493323872.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.158 kcal (2) G-P(sol) polarization free energy of solvation -31.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds