Wall clock time and date at job start Tue Mar 31 2020 17:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47278 * 2 1 4 4 N 1.46498 * 109.47399 * 180.02562 * 3 2 1 5 5 C 1.36944 * 119.99911 * 275.31359 * 4 3 2 6 6 H 1.07996 * 119.99843 * 37.57404 * 5 4 3 7 7 C 1.38804 * 119.99577 * 217.57440 * 5 4 3 8 8 N 1.31618 * 120.00614 * 21.42764 * 7 5 4 9 9 Si 1.86805 * 119.99781 * 201.42122 * 7 5 4 10 10 H 1.48497 * 109.47281 * 60.00113 * 9 7 5 11 11 H 1.48503 * 109.47355 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46948 * 300.00342 * 9 7 5 13 13 C 1.46501 * 120.00116 * 95.30784 * 4 3 2 14 14 C 1.53007 * 109.47061 * 270.00461 * 13 4 3 15 15 N 1.46498 * 109.46823 * 180.02562 * 14 13 4 16 16 C 1.34776 * 119.99931 * 180.02562 * 15 14 13 17 17 O 1.21577 * 119.99890 * 359.97438 * 16 15 14 18 18 C 1.47661 * 120.00263 * 179.97438 * 16 15 14 19 19 C 1.40162 * 119.85388 * 0.02562 * 18 16 15 20 20 C 1.36217 * 120.07813 * 179.97438 * 19 18 16 21 21 C 1.39578 * 120.43546 * 0.02562 * 20 19 18 22 22 S 1.76149 * 131.53682 * 180.02562 * 21 20 19 23 23 C 1.70622 * 90.85991 * 179.97438 * 22 21 20 24 24 N 1.27853 * 111.58533 * 359.97438 * 23 22 21 25 25 C 1.34735 * 117.84259 * 0.02562 * 24 23 22 26 26 C 1.38722 * 119.85556 * 179.97438 * 18 16 15 27 27 H 1.09003 * 109.46751 * 299.99751 * 1 2 3 28 28 H 1.09006 * 109.47462 * 59.99511 * 1 2 3 29 29 H 1.08991 * 109.47306 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46751 * 240.00249 * 2 1 3 31 31 H 1.08992 * 109.47446 * 120.00389 * 2 1 3 32 32 H 1.09003 * 109.47027 * 60.00418 * 3 2 1 33 33 H 1.08999 * 109.47430 * 300.00235 * 3 2 1 34 34 H 0.96991 * 120.00294 * 180.02562 * 8 7 5 35 35 H 1.08994 * 109.47111 * 150.00677 * 13 4 3 36 36 H 1.08995 * 109.47372 * 30.00161 * 13 4 3 37 37 H 1.08994 * 109.46981 * 60.00137 * 14 13 4 38 38 H 1.09003 * 109.46782 * 299.99759 * 14 13 4 39 39 H 0.97001 * 120.00556 * 359.97438 * 15 14 13 40 40 H 1.07997 * 119.95969 * 359.97438 * 19 18 16 41 41 H 1.08004 * 119.78198 * 180.28156 * 20 19 18 42 42 H 1.07997 * 124.20808 * 180.02562 * 23 22 21 43 43 H 1.07990 * 119.97429 * 0.04732 * 26 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1902 1.3325 1.1800 6 1 3.8185 0.6869 1.9618 7 6 5.3624 2.0509 1.3715 8 7 5.6026 3.1237 0.6479 9 14 6.5989 1.4951 2.6566 10 1 7.0675 0.1238 2.3323 11 1 7.7565 2.4253 2.6647 12 1 5.9555 1.4946 3.9950 13 6 4.2370 1.5601 -1.2642 14 6 4.4917 0.1647 -1.8378 15 7 5.2242 0.2823 -3.1010 16 6 5.5605 -0.8258 -3.7907 17 8 5.2563 -1.9229 -3.3642 18 6 6.2983 -0.7073 -5.0642 19 6 6.6479 0.5590 -5.5528 20 6 7.3290 0.6736 -6.7269 21 6 7.6837 -0.4648 -7.4526 22 16 8.5489 -0.6570 -8.9749 23 6 8.3990 -2.3537 -8.8754 24 7 7.7726 -2.7094 -7.8191 25 6 7.3455 -1.7416 -6.9848 26 6 6.6433 -1.8498 -5.7713 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6767 1.9564 -0.8899 34 1 6.4218 3.6254 0.7815 35 1 5.1895 2.0595 -1.0872 36 1 3.6477 2.1421 -1.9727 37 1 3.5392 -0.3348 -2.0148 38 1 5.0811 -0.4174 -1.1292 39 1 5.4666 1.1576 -3.4415 40 1 6.3770 1.4449 -4.9978 41 1 7.6000 1.6515 -7.0967 42 1 8.7859 -3.0416 -9.6126 43 1 6.3715 -2.8230 -5.3901 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493323872.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:35 Heat of formation + Delta-G solvation = 16.901960 kcal Electronic energy + Delta-G solvation = -25246.634417 eV Core-core repulsion = 21610.977956 eV Total energy + Delta-G solvation = -3635.656461 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.75239 -40.56011 -38.29870 -37.70000 -35.87370 -34.60491 -32.76154 -32.33507 -31.35682 -29.59228 -27.33452 -26.32207 -25.65399 -24.27973 -23.25656 -22.58648 -21.90197 -21.32773 -19.85897 -18.76282 -18.15890 -17.54525 -17.38013 -17.00128 -16.50743 -16.44394 -15.96403 -15.79618 -15.58471 -15.36135 -15.03420 -14.85003 -14.55797 -14.37072 -14.32694 -14.18376 -13.34619 -13.17609 -13.07132 -12.95205 -12.88859 -12.63172 -12.52124 -12.24400 -12.15934 -12.03385 -11.86918 -11.68662 -11.35937 -11.25615 -11.15110 -10.73807 -10.52914 -10.16318 -9.88682 -9.20573 -8.58483 -7.85819 -5.48236 -0.72244 -0.42594 0.18546 0.62273 1.16506 1.44235 1.47982 1.53889 1.74156 2.00827 2.49916 2.63335 2.97298 3.21770 3.44091 3.56520 3.79937 3.90748 4.03873 4.10067 4.22021 4.32476 4.38695 4.43085 4.53802 4.63549 4.68614 4.73438 4.85941 4.94187 4.96101 5.00128 5.07608 5.15768 5.23226 5.26489 5.32262 5.43207 5.44201 5.62964 5.66247 5.74194 6.43657 6.47773 6.51465 7.10372 7.16883 7.82945 8.34918 9.09926 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014285 B = 0.002567 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.586216 B =10904.882349 C =11919.142822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.136 4.136 3 C 0.146 3.854 4 N -0.597 5.597 5 C -0.271 4.271 6 H 0.050 0.950 7 C -0.025 4.025 8 N -0.907 5.907 9 Si 0.948 3.052 10 H -0.288 1.288 11 H -0.287 1.287 12 H -0.276 1.276 13 C 0.145 3.855 14 C 0.118 3.882 15 N -0.701 5.701 16 C 0.552 3.448 17 O -0.585 6.585 18 C -0.123 4.123 19 C -0.070 4.070 20 C -0.064 4.064 21 C -0.183 4.183 22 S 0.167 5.833 23 C 0.070 3.930 24 N -0.502 5.502 25 C 0.051 3.949 26 C -0.021 4.021 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.045 0.955 31 H 0.037 0.963 32 H 0.036 0.964 33 H 0.051 0.949 34 H 0.255 0.745 35 H 0.077 0.923 36 H 0.049 0.951 37 H 0.050 0.950 38 H 0.031 0.969 39 H 0.413 0.587 40 H 0.166 0.834 41 H 0.175 0.825 42 H 0.244 0.756 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.363 -2.224 -22.283 22.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.176 4.176 3 C 0.021 3.979 4 N -0.317 5.317 5 C -0.402 4.402 6 H 0.068 0.932 7 C -0.223 4.223 8 N -0.551 5.551 9 Si 0.776 3.224 10 H -0.215 1.215 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.018 3.982 14 C -0.008 4.008 15 N -0.352 5.352 16 C 0.340 3.660 17 O -0.467 6.467 18 C -0.130 4.130 19 C -0.092 4.092 20 C -0.086 4.086 21 C -0.303 4.303 22 S 0.422 5.578 23 C -0.234 4.234 24 N -0.216 5.216 25 C -0.068 4.068 26 C -0.042 4.042 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.094 0.906 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.049 0.951 39 H 0.251 0.749 40 H 0.183 0.817 41 H 0.192 0.808 42 H 0.260 0.740 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.649 -2.791 -22.617 23.258 hybrid contribution 0.327 -0.539 1.745 1.855 sum 4.976 -3.329 -20.872 21.714 Atomic orbital electron populations 1.21654 0.94269 1.01730 1.02035 1.22027 0.96429 0.98903 1.00217 1.21048 0.83307 0.94415 0.99171 1.43828 1.00869 1.85036 1.01965 1.19095 1.06318 1.19974 0.94765 0.93245 1.25700 1.01977 0.94723 0.99945 1.70056 1.25952 1.15333 1.43716 0.85664 0.79269 0.77407 0.80035 1.21462 1.21232 1.20151 1.20944 0.99435 0.91626 0.86231 1.22030 0.94362 1.01378 0.83055 1.45823 1.56964 1.09159 1.23290 1.18534 0.78968 0.84118 0.84426 1.90754 1.56874 1.28065 1.70979 1.19612 1.03050 0.94993 0.95305 1.21278 0.95910 0.96225 0.95819 1.20388 0.97151 0.97704 0.93405 1.24509 1.05738 0.98247 1.01781 1.83811 1.53593 1.04638 1.15751 1.28868 0.97384 0.99480 0.97648 1.66235 1.14090 1.36279 1.04954 1.19134 1.02961 0.87835 0.96908 1.20657 0.93630 0.99024 0.90936 0.92558 0.92023 0.92394 0.93666 0.94383 0.94601 0.93051 0.93598 0.90562 0.93310 0.93126 0.95074 0.74872 0.81657 0.80772 0.74025 0.85459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.86 9.91 71.98 0.71 -3.14 16 2 C -0.14 -4.91 6.23 30.59 0.19 -4.72 16 3 C 0.15 5.93 5.72 86.38 0.49 6.42 16 4 N -0.60 -28.59 2.43 -702.01 -1.71 -30.30 16 5 C -0.27 -14.57 9.45 84.03 0.79 -13.78 16 6 H 0.05 2.72 7.92 -2.91 -0.02 2.69 16 7 C -0.03 -1.35 4.95 84.86 0.42 -0.93 16 8 N -0.91 -49.82 11.47 21.65 0.25 -49.58 16 9 Si 0.95 44.10 29.60 68.60 2.03 46.13 16 10 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 11 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 12 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 13 C 0.14 6.26 5.45 86.38 0.47 6.73 16 14 C 0.12 4.79 6.00 86.38 0.52 5.31 16 15 N -0.70 -23.05 5.50 -466.14 -2.57 -25.62 16 16 C 0.55 19.31 7.76 86.73 0.67 19.99 16 17 O -0.59 -25.62 16.30 -3.96 -0.06 -25.69 16 18 C -0.12 -3.42 5.86 -20.21 -0.12 -3.54 16 19 C -0.07 -1.37 9.47 22.27 0.21 -1.16 16 20 C -0.06 -1.04 9.99 22.12 0.22 -0.82 16 21 C -0.18 -3.53 6.57 23.05 0.15 -3.38 16 22 S 0.17 1.99 23.17 -56.49 -1.31 0.68 16 23 C 0.07 0.97 12.09 130.82 1.58 2.55 16 24 N -0.50 -11.70 10.57 -194.91 -2.06 -13.76 16 25 C 0.05 1.29 6.99 39.74 0.28 1.57 16 26 C -0.02 -0.60 9.65 22.97 0.22 -0.38 16 27 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 29 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.04 1.69 6.64 -2.39 -0.02 1.67 16 31 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.04 1.51 8.08 -2.39 -0.02 1.49 16 33 H 0.05 1.90 7.83 -2.39 -0.02 1.88 16 34 H 0.25 13.52 8.31 -92.71 -0.77 12.75 16 35 H 0.08 3.71 5.52 -2.39 -0.01 3.70 16 36 H 0.05 1.89 7.86 -2.39 -0.02 1.88 16 37 H 0.05 2.10 6.64 -2.39 -0.02 2.08 16 38 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.41 10.67 6.47 -92.71 -0.60 10.07 16 40 H 0.17 2.35 6.37 -2.91 -0.02 2.33 16 41 H 0.17 1.53 8.06 -2.91 -0.02 1.51 16 42 H 0.24 1.07 8.06 -2.91 -0.02 1.05 16 43 H 0.13 4.12 7.60 -2.92 -0.02 4.10 16 Total: -1.00 -71.80 372.53 1.83 -69.97 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: 0.44 Total: 17.43 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: 6.82 Total: 10.73 kcal Atomic # 7 Polarization: -113.16 SS G_CDS: -6.09 Total: -119.25 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -0.06 Total: -25.69 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Atomic # 16 Polarization: 1.99 SS G_CDS: -1.31 Total: 0.68 kcal Total: -71.80 1.83 -69.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493323872.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.873 kcal (2) G-P(sol) polarization free energy of solvation -71.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds