Wall clock time and date at job start Tue Mar 31 2020 17:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46989 * 2 1 4 4 H 1.08998 * 109.47263 * 304.99846 * 3 2 1 5 5 C 1.52998 * 109.47157 * 184.99736 * 3 2 1 6 6 N 1.46504 * 109.47249 * 185.00196 * 5 3 2 7 7 C 1.34781 * 119.99926 * 180.02562 * 6 5 3 8 8 O 1.21583 * 119.99786 * 359.97438 * 7 6 5 9 9 C 1.47593 * 119.99463 * 179.97438 * 7 6 5 10 10 C 1.40188 * 120.12888 * 359.97438 * 9 7 6 11 11 C 1.35752 * 120.61519 * 179.72188 * 10 9 7 12 12 C 1.41243 * 120.63491 * 0.27723 * 11 10 9 13 13 N 1.34417 * 129.48223 * 179.97438 * 12 11 10 14 14 C 1.28062 * 117.91165 * 180.02562 * 13 12 11 15 15 C 1.50701 * 124.23651 * 179.97438 * 14 13 12 16 16 S 1.70642 * 111.52269 * 0.02562 * 14 13 12 17 17 C 1.40153 * 118.74482 * 0.02562 * 12 11 10 18 18 C 1.38912 * 120.40576 * 359.96222 * 17 12 11 19 19 N 1.46511 * 109.47306 * 65.00178 * 3 2 1 20 20 C 1.36941 * 119.99604 * 275.00094 * 19 3 2 21 21 H 1.08002 * 120.00002 * 359.97438 * 20 19 3 22 22 C 1.38806 * 119.99653 * 179.97438 * 20 19 3 23 23 N 1.31616 * 120.00450 * 0.02562 * 22 20 19 24 24 Si 1.86809 * 119.99757 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46794 * 90.00315 * 24 22 20 26 26 H 1.48492 * 109.47104 * 209.99949 * 24 22 20 27 27 H 1.48497 * 109.46981 * 330.00382 * 24 22 20 28 28 H 1.08996 * 109.46878 * 60.00165 * 1 2 3 29 29 H 1.08997 * 109.46637 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47284 * 300.00031 * 1 2 3 31 31 H 1.08997 * 109.47284 * 239.99968 * 2 1 3 32 32 H 1.09005 * 109.46755 * 119.99613 * 2 1 3 33 33 H 1.09000 * 109.47250 * 65.00478 * 5 3 2 34 34 H 1.08997 * 109.47470 * 305.00046 * 5 3 2 35 35 H 0.96995 * 120.00018 * 359.97438 * 6 5 3 36 36 H 1.08002 * 119.69558 * 0.02562 * 10 9 7 37 37 H 1.08003 * 119.68180 * 180.30071 * 11 10 9 38 38 H 1.09000 * 109.47042 * 90.03357 * 15 14 13 39 39 H 1.09004 * 109.47057 * 210.02304 * 15 14 13 40 40 H 1.08995 * 109.47321 * 330.02915 * 15 14 13 41 41 H 1.08001 * 120.07069 * 180.02562 * 18 17 12 42 42 H 0.96989 * 120.00045 * 94.99304 * 19 3 2 43 43 H 0.96994 * 120.00165 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1257 6 7 4.0630 2.8169 -0.0058 7 6 5.3857 3.0631 -0.0867 8 8 6.1653 2.1461 -0.2586 9 6 5.8874 4.4459 0.0335 10 6 4.9907 5.5052 0.2312 11 6 5.4419 6.7802 0.3486 12 6 6.8229 7.0652 0.2682 13 7 7.4585 8.2462 0.3584 14 6 8.7347 8.2498 0.2520 15 6 9.5885 9.4891 0.3305 16 16 9.3470 6.6757 0.0090 17 6 7.7188 6.0069 0.0642 18 6 7.2523 4.7039 -0.0551 19 7 1.6524 2.0975 1.2519 20 6 0.4156 2.6735 1.3689 21 1 -0.2740 2.6452 0.5381 22 6 0.0482 3.2936 2.5551 23 7 0.8887 3.3285 3.5673 24 14 -1.6388 4.0799 2.7144 25 1 -2.6057 3.0771 3.2289 26 1 -1.5643 5.2247 3.6573 27 1 -2.0875 4.5629 1.3838 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.8499 1.0378 -1.0960 34 1 3.9954 0.8312 0.6660 35 1 3.4410 3.5484 0.1309 36 1 3.9314 5.3045 0.2955 37 1 4.7380 7.5842 0.5055 38 1 9.8799 9.6645 1.3660 39 1 10.4813 9.3544 -0.2803 40 1 9.0221 10.3445 -0.0376 41 1 7.9475 3.8924 -0.2118 42 1 2.2718 2.1231 1.9978 43 1 0.6318 3.7616 4.3963 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495082945.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:21 Heat of formation + Delta-G solvation = 22.250267 kcal Electronic energy + Delta-G solvation = -25320.330428 eV Core-core repulsion = 21684.905887 eV Total energy + Delta-G solvation = -3635.424541 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.72418 -39.41761 -37.09828 -36.53805 -33.86452 -32.46112 -31.90143 -31.29273 -29.84157 -29.03246 -27.53427 -24.53251 -24.03555 -23.14881 -22.17495 -21.46599 -20.25114 -19.91250 -18.79329 -17.70520 -17.08001 -16.22822 -15.97190 -15.47776 -15.31061 -15.15317 -14.65265 -14.19160 -14.09945 -14.03071 -13.60193 -13.39837 -13.28003 -13.25502 -13.03626 -12.73684 -12.56359 -12.47560 -12.19515 -11.58600 -11.43653 -11.05796 -10.99274 -10.92892 -10.77123 -10.46628 -10.37275 -10.23247 -10.05855 -9.89676 -9.78421 -9.57124 -8.99745 -8.89656 -8.65393 -8.30130 -7.07832 -5.85015 -3.14758 -0.02502 0.95980 1.00978 1.44645 1.84000 3.00996 3.36951 3.41741 3.43730 3.45158 3.58835 3.75639 4.38698 4.50901 4.67296 4.79462 4.92499 4.99495 5.04618 5.09238 5.27769 5.39351 5.40794 5.50198 5.52777 5.66459 5.87284 5.89237 5.93274 5.93629 6.01069 6.12220 6.14480 6.39189 6.42443 6.50487 6.54312 6.57709 6.82116 6.98858 7.21580 7.36365 7.63168 7.82293 8.31933 8.43011 9.44154 9.98510 10.34546 11.36567 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014160 B = 0.002832 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.861654 B = 9884.416370 C =11521.338841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.134 4.134 3 C 0.162 3.838 4 H 0.055 0.945 5 C 0.114 3.886 6 N -0.702 5.702 7 C 0.556 3.444 8 O -0.549 6.549 9 C -0.111 4.111 10 C -0.069 4.069 11 C -0.069 4.069 12 C 0.103 3.897 13 N -0.470 5.470 14 C 0.091 3.909 15 C -0.083 4.083 16 S 0.104 5.896 17 C -0.195 4.195 18 C -0.009 4.009 19 N -0.722 5.722 20 C -0.239 4.239 21 H 0.073 0.927 22 C -0.010 4.010 23 N -0.928 5.928 24 Si 0.902 3.098 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.282 1.282 28 H 0.040 0.960 29 H 0.032 0.968 30 H 0.085 0.915 31 H 0.043 0.957 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.411 0.589 36 H 0.147 0.853 37 H 0.142 0.858 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.144 0.856 42 H 0.385 0.615 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.488 7.680 -8.728 19.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.052 3.948 4 H 0.073 0.927 5 C -0.010 4.010 6 N -0.354 5.354 7 C 0.342 3.658 8 O -0.429 6.429 9 C -0.117 4.117 10 C -0.091 4.091 11 C -0.090 4.090 12 C -0.018 4.018 13 N -0.184 5.184 14 C -0.193 4.193 15 C -0.143 4.143 16 S 0.360 5.640 17 C -0.314 4.314 18 C -0.032 4.032 19 N -0.364 5.364 20 C -0.370 4.370 21 H 0.091 0.909 22 C -0.206 4.206 23 N -0.576 5.576 24 Si 0.733 3.267 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.207 1.207 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.103 0.897 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.249 0.751 36 H 0.164 0.836 37 H 0.160 0.840 38 H 0.110 0.890 39 H 0.103 0.897 40 H 0.111 0.889 41 H 0.162 0.838 42 H 0.219 0.781 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 16.614 7.272 -8.910 20.206 hybrid contribution -2.075 0.587 0.687 2.264 sum 14.539 7.859 -8.224 18.460 Atomic orbital electron populations 1.21770 0.95703 0.99662 1.03252 1.22066 0.96990 0.98328 1.00072 1.20580 0.89799 0.92928 0.91503 0.92745 1.21734 0.95743 0.82195 1.01344 1.45897 1.06715 1.11168 1.71609 1.17983 0.82807 0.87711 0.77251 1.90752 1.56156 1.45610 1.50358 1.19947 0.93405 0.93944 1.04452 1.21000 1.00596 0.91380 0.96112 1.20312 0.91533 0.97432 0.99716 1.19316 0.95268 0.85809 1.01366 1.66149 1.07840 1.27256 1.17203 1.26828 0.92986 0.99974 0.99492 1.20578 0.97575 0.91961 1.04185 1.83905 1.05853 1.01460 1.72818 1.23691 0.96481 0.99190 1.12007 1.20379 0.94907 0.93469 0.94491 1.42471 1.16803 1.65881 1.11278 1.19193 0.91960 1.27821 0.98008 0.90886 1.24729 0.97984 1.01537 0.96376 1.69654 1.35096 1.48877 1.03961 0.86281 0.84273 0.78813 0.77352 1.21769 1.21844 1.20748 0.94107 0.94867 0.89656 0.93812 0.92485 0.91584 0.91547 0.75135 0.83572 0.84002 0.89038 0.89681 0.88889 0.83811 0.78071 0.93451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.18 37.16 0.34 -2.20 16 2 C -0.13 -2.24 5.61 -26.73 -0.15 -2.39 16 3 C 0.16 2.88 2.59 -67.93 -0.18 2.71 16 4 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 5 C 0.11 1.87 5.23 -4.04 -0.02 1.85 16 6 N -0.70 -11.40 5.34 -61.33 -0.33 -11.73 16 7 C 0.56 9.28 7.76 -12.44 -0.10 9.19 16 8 O -0.55 -10.52 16.34 5.29 0.09 -10.43 16 9 C -0.11 -1.63 5.87 -105.00 -0.62 -2.25 16 10 C -0.07 -0.94 9.44 -39.74 -0.38 -1.31 16 11 C -0.07 -0.91 10.03 -39.33 -0.39 -1.31 16 12 C 0.10 1.44 7.00 -84.87 -0.59 0.84 16 13 N -0.47 -6.21 10.56 -8.96 -0.09 -6.30 16 14 C 0.09 0.94 7.29 -13.85 -0.10 0.84 16 15 C -0.08 -0.49 10.44 36.01 0.38 -0.12 16 16 S 0.10 1.06 23.11 -107.50 -2.48 -1.43 16 17 C -0.20 -2.59 6.54 -38.61 -0.25 -2.84 16 18 C -0.01 -0.13 9.62 -38.98 -0.37 -0.50 16 19 N -0.72 -15.88 4.51 -53.42 -0.24 -16.12 16 20 C -0.24 -5.87 7.75 -15.06 -0.12 -5.99 16 21 H 0.07 1.76 7.32 -52.49 -0.38 1.38 16 22 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 23 N -0.93 -26.17 13.06 55.49 0.72 -25.45 16 24 Si 0.90 21.09 29.55 -169.99 -5.02 16.07 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 1.75 5.99 -51.93 -0.31 1.44 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.41 6.59 6.16 -40.82 -0.25 6.34 16 36 H 0.15 1.86 6.38 -52.49 -0.33 1.52 16 37 H 0.14 1.64 8.06 -52.48 -0.42 1.22 16 38 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.14 1.91 7.64 -52.49 -0.40 1.51 16 42 H 0.39 9.35 7.80 -40.82 -0.32 9.03 16 43 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 372.65 15.07 5.62 5.62 Total: -1.00 -30.28 372.65 -10.18 -40.45 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: -5.78 Total: 13.14 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: -2.65 Total: -3.82 kcal Atomic # 7 Polarization: -59.65 SS G_CDS: 0.06 Total: -59.59 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.09 Total: -10.43 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 1.06 SS G_CDS: -2.48 Total: -1.43 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.28 -10.18 -40.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495082945.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.702 kcal (2) G-P(sol) polarization free energy of solvation -30.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds