Wall clock time and date at job start Tue Mar 31 2020 17:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46989 * 2 1 4 4 H 1.08998 * 109.47263 * 304.99846 * 3 2 1 5 5 C 1.52998 * 109.47157 * 184.99736 * 3 2 1 6 6 N 1.46504 * 109.47249 * 185.00196 * 5 3 2 7 7 C 1.34781 * 119.99926 * 180.02562 * 6 5 3 8 8 O 1.21583 * 119.99786 * 359.97438 * 7 6 5 9 9 C 1.47593 * 119.99463 * 179.97438 * 7 6 5 10 10 C 1.40188 * 120.12888 * 359.97438 * 9 7 6 11 11 C 1.35752 * 120.61519 * 179.72188 * 10 9 7 12 12 C 1.41243 * 120.63491 * 0.27723 * 11 10 9 13 13 N 1.34417 * 129.48223 * 179.97438 * 12 11 10 14 14 C 1.28062 * 117.91165 * 180.02562 * 13 12 11 15 15 C 1.50701 * 124.23651 * 179.97438 * 14 13 12 16 16 S 1.70642 * 111.52269 * 0.02562 * 14 13 12 17 17 C 1.40153 * 118.74482 * 0.02562 * 12 11 10 18 18 C 1.38912 * 120.40576 * 359.96222 * 17 12 11 19 19 N 1.46511 * 109.47306 * 65.00178 * 3 2 1 20 20 C 1.36941 * 119.99604 * 275.00094 * 19 3 2 21 21 H 1.08002 * 120.00002 * 359.97438 * 20 19 3 22 22 C 1.38806 * 119.99653 * 179.97438 * 20 19 3 23 23 N 1.31616 * 120.00450 * 0.02562 * 22 20 19 24 24 Si 1.86809 * 119.99757 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46794 * 90.00315 * 24 22 20 26 26 H 1.48492 * 109.47104 * 209.99949 * 24 22 20 27 27 H 1.48497 * 109.46981 * 330.00382 * 24 22 20 28 28 H 1.08996 * 109.46878 * 60.00165 * 1 2 3 29 29 H 1.08997 * 109.46637 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47284 * 300.00031 * 1 2 3 31 31 H 1.08997 * 109.47284 * 239.99968 * 2 1 3 32 32 H 1.09005 * 109.46755 * 119.99613 * 2 1 3 33 33 H 1.09000 * 109.47250 * 65.00478 * 5 3 2 34 34 H 1.08997 * 109.47470 * 305.00046 * 5 3 2 35 35 H 0.96995 * 120.00018 * 359.97438 * 6 5 3 36 36 H 1.08002 * 119.69558 * 0.02562 * 10 9 7 37 37 H 1.08003 * 119.68180 * 180.30071 * 11 10 9 38 38 H 1.09000 * 109.47042 * 90.03357 * 15 14 13 39 39 H 1.09004 * 109.47057 * 210.02304 * 15 14 13 40 40 H 1.08995 * 109.47321 * 330.02915 * 15 14 13 41 41 H 1.08001 * 120.07069 * 180.02562 * 18 17 12 42 42 H 0.96989 * 120.00045 * 94.99304 * 19 3 2 43 43 H 0.96994 * 120.00165 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1257 6 7 4.0630 2.8169 -0.0058 7 6 5.3857 3.0631 -0.0867 8 8 6.1653 2.1461 -0.2586 9 6 5.8874 4.4459 0.0335 10 6 4.9907 5.5052 0.2312 11 6 5.4419 6.7802 0.3486 12 6 6.8229 7.0652 0.2682 13 7 7.4585 8.2462 0.3584 14 6 8.7347 8.2498 0.2520 15 6 9.5885 9.4891 0.3305 16 16 9.3470 6.6757 0.0090 17 6 7.7188 6.0069 0.0642 18 6 7.2523 4.7039 -0.0551 19 7 1.6524 2.0975 1.2519 20 6 0.4156 2.6735 1.3689 21 1 -0.2740 2.6452 0.5381 22 6 0.0482 3.2936 2.5551 23 7 0.8887 3.3285 3.5673 24 14 -1.6388 4.0799 2.7144 25 1 -2.6057 3.0771 3.2289 26 1 -1.5643 5.2247 3.6573 27 1 -2.0875 4.5629 1.3838 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.8499 1.0378 -1.0960 34 1 3.9954 0.8312 0.6660 35 1 3.4410 3.5484 0.1309 36 1 3.9314 5.3045 0.2955 37 1 4.7380 7.5842 0.5055 38 1 9.8799 9.6645 1.3660 39 1 10.4813 9.3544 -0.2803 40 1 9.0221 10.3445 -0.0376 41 1 7.9475 3.8924 -0.2118 42 1 2.2718 2.1231 1.9978 43 1 0.6318 3.7616 4.3963 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495082945.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:20 Heat of formation + Delta-G solvation = 3.356702 kcal Electronic energy + Delta-G solvation = -25321.149714 eV Core-core repulsion = 21684.905887 eV Total energy + Delta-G solvation = -3636.243827 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.76378 -40.64216 -38.41074 -37.77964 -35.34742 -34.17009 -32.74554 -32.33023 -31.48509 -30.17613 -28.82565 -25.78870 -25.34819 -24.57572 -23.41705 -22.44676 -21.59965 -21.19786 -19.85140 -19.22059 -18.53499 -17.42345 -17.04041 -16.89113 -16.37157 -16.28685 -16.09478 -15.65568 -15.51670 -15.08723 -14.90317 -14.59778 -14.36239 -14.24103 -14.21623 -14.03217 -13.74963 -13.55515 -13.11538 -12.96129 -12.79144 -12.78003 -12.46038 -12.34317 -12.08754 -12.02523 -11.86876 -11.61263 -11.33229 -11.31929 -11.16148 -10.86184 -10.77265 -10.14674 -9.73460 -9.25438 -8.95751 -7.85479 -5.12529 -1.00756 -0.02492 0.08721 0.55547 0.83279 1.51089 1.53127 1.59538 1.85404 2.15082 2.61271 2.63049 2.77721 3.42154 3.48109 3.60631 3.83099 3.91234 3.96464 3.97471 4.04337 4.26408 4.39636 4.49786 4.56548 4.58703 4.65279 4.66114 4.75460 4.86076 4.89460 4.97812 5.07269 5.11352 5.13305 5.14812 5.22720 5.39400 5.47004 5.58268 5.64084 5.74377 6.34416 6.46806 6.50007 7.11074 7.42802 8.14194 8.39169 9.37171 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014160 B = 0.002832 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.861654 B = 9884.416370 C =11521.338841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.130 4.130 3 C 0.164 3.836 4 H 0.062 0.938 5 C 0.121 3.879 6 N -0.701 5.701 7 C 0.558 3.442 8 O -0.578 6.578 9 C -0.130 4.130 10 C -0.067 4.067 11 C -0.078 4.078 12 C 0.096 3.904 13 N -0.504 5.504 14 C 0.098 3.902 15 C -0.085 4.085 16 S 0.151 5.849 17 C -0.221 4.221 18 C -0.007 4.007 19 N -0.728 5.728 20 C -0.214 4.214 21 H 0.081 0.919 22 C -0.071 4.071 23 N -0.967 5.967 24 Si 0.956 3.044 25 H -0.296 1.296 26 H -0.304 1.304 27 H -0.268 1.268 28 H 0.050 0.950 29 H 0.051 0.949 30 H 0.048 0.952 31 H 0.076 0.924 32 H 0.045 0.955 33 H 0.084 0.916 34 H 0.054 0.946 35 H 0.412 0.588 36 H 0.149 0.851 37 H 0.154 0.846 38 H 0.109 0.891 39 H 0.111 0.889 40 H 0.098 0.902 41 H 0.145 0.855 42 H 0.372 0.628 43 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.539 8.448 -10.306 21.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.170 4.170 3 C 0.055 3.945 4 H 0.080 0.920 5 C -0.003 4.003 6 N -0.352 5.352 7 C 0.346 3.654 8 O -0.460 6.460 9 C -0.137 4.137 10 C -0.089 4.089 11 C -0.099 4.099 12 C -0.025 4.025 13 N -0.219 5.219 14 C -0.185 4.185 15 C -0.145 4.145 16 S 0.407 5.593 17 C -0.340 4.340 18 C -0.030 4.030 19 N -0.368 5.368 20 C -0.346 4.346 21 H 0.099 0.901 22 C -0.263 4.263 23 N -0.618 5.618 24 Si 0.787 3.213 25 H -0.224 1.224 26 H -0.231 1.231 27 H -0.193 1.193 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.094 0.906 32 H 0.064 0.936 33 H 0.103 0.897 34 H 0.072 0.928 35 H 0.250 0.750 36 H 0.167 0.833 37 H 0.172 0.828 38 H 0.127 0.873 39 H 0.130 0.870 40 H 0.117 0.883 41 H 0.163 0.837 42 H 0.204 0.796 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 17.659 8.022 -10.547 22.079 hybrid contribution -2.242 0.371 1.086 2.519 sum 15.417 8.394 -9.462 19.941 Atomic orbital electron populations 1.21700 0.95969 1.00571 1.01833 1.21989 0.96634 0.97309 1.01100 1.20734 0.90728 0.93399 0.89623 0.92049 1.21658 0.94531 0.82285 1.01850 1.45881 1.06756 1.11122 1.71410 1.18232 0.82537 0.88257 0.76396 1.90724 1.56717 1.46646 1.51938 1.19813 0.94107 0.93079 1.06676 1.20986 1.00533 0.91324 0.96034 1.20467 0.91962 0.97569 0.99870 1.19580 0.95697 0.86487 1.00764 1.66246 1.09148 1.26948 1.19602 1.27699 0.92700 1.01543 0.96512 1.20854 0.97776 0.89992 1.05868 1.83730 1.03210 1.00583 1.71748 1.23943 0.98658 0.98872 1.12513 1.20419 0.94646 0.93964 0.93972 1.42591 1.15806 1.66096 1.12341 1.19481 0.92448 1.25198 0.97437 0.90134 1.25331 1.00720 1.03555 0.96706 1.69798 1.36672 1.51044 1.04275 0.85391 0.81102 0.77406 0.77386 1.22437 1.23087 1.19293 0.93107 0.92949 0.93270 0.90581 0.93613 0.89746 0.92761 0.75043 0.83298 0.82837 0.87293 0.87013 0.88327 0.83681 0.79561 0.94511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.70 9.18 71.98 0.66 -4.04 16 2 C -0.13 -4.09 5.61 30.59 0.17 -3.92 16 3 C 0.16 5.63 2.59 44.99 0.12 5.75 16 4 H 0.06 2.07 8.08 -2.39 -0.02 2.05 16 5 C 0.12 3.88 5.23 86.38 0.45 4.33 16 6 N -0.70 -22.78 5.34 -466.20 -2.49 -25.27 16 7 C 0.56 18.86 7.76 86.71 0.67 19.53 16 8 O -0.58 -22.38 16.34 -3.98 -0.06 -22.45 16 9 C -0.13 -3.90 5.87 -20.11 -0.12 -4.02 16 10 C -0.07 -1.85 9.44 22.17 0.21 -1.64 16 11 C -0.08 -2.07 10.03 22.43 0.23 -1.85 16 12 C 0.10 2.64 7.00 39.95 0.28 2.92 16 13 N -0.50 -12.74 10.56 -182.19 -1.92 -14.66 16 14 C 0.10 1.82 7.29 88.66 0.65 2.47 16 15 C -0.09 -0.74 10.44 71.24 0.74 0.01 16 16 S 0.15 2.78 23.11 -56.49 -1.31 1.47 16 17 C -0.22 -5.76 6.54 22.90 0.15 -5.61 16 18 C -0.01 -0.20 9.62 22.66 0.22 0.02 16 19 N -0.73 -31.99 4.51 -322.93 -1.46 -33.45 16 20 C -0.21 -10.45 7.75 84.03 0.65 -9.79 16 21 H 0.08 3.78 7.32 -2.91 -0.02 3.76 16 22 C -0.07 -3.76 5.50 84.86 0.47 -3.30 16 23 N -0.97 -55.88 13.06 21.65 0.28 -55.60 16 24 Si 0.96 43.83 29.55 68.60 2.03 45.85 16 25 H -0.30 -13.73 7.11 99.48 0.71 -13.03 16 26 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 27 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 28 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.05 1.97 5.99 -2.39 -0.01 1.96 16 31 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 33 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.41 13.30 6.16 -92.71 -0.57 12.73 16 36 H 0.15 3.88 6.38 -2.91 -0.02 3.86 16 37 H 0.15 3.57 8.06 -2.91 -0.02 3.54 16 38 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.11 0.41 8.14 -2.38 -0.02 0.39 16 40 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.15 3.90 7.64 -2.91 -0.02 3.88 16 42 H 0.37 18.40 7.80 -92.72 -0.72 17.68 16 43 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -65.72 372.65 0.38 -65.34 By element: Atomic # 1 Polarization: 38.13 SS G_CDS: -0.24 Total: 37.89 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: 5.55 Total: 0.86 kcal Atomic # 7 Polarization: -123.39 SS G_CDS: -5.59 Total: -128.97 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.06 Total: -22.45 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: 2.78 SS G_CDS: -1.31 Total: 1.47 kcal Total: -65.72 0.38 -65.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495082945.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.698 kcal (2) G-P(sol) polarization free energy of solvation -65.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds