Wall clock time and date at job start Tue Mar 31 2020 17:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47537 * 2 1 4 4 H 1.09003 * 109.47022 * 55.00041 * 3 2 1 5 5 C 1.52998 * 109.47443 * 175.00128 * 3 2 1 6 6 N 1.46500 * 109.47304 * 174.99839 * 5 3 2 7 7 C 1.34776 * 119.99630 * 179.97438 * 6 5 3 8 8 O 1.21585 * 120.00724 * 0.02562 * 7 6 5 9 9 C 1.47587 * 119.99653 * 179.97438 * 7 6 5 10 10 C 1.40203 * 120.12579 * 0.02562 * 9 7 6 11 11 C 1.35754 * 120.61455 * 179.97438 * 10 9 7 12 12 C 1.41250 * 120.63530 * 0.02562 * 11 10 9 13 13 N 1.34414 * 129.48278 * 180.02562 * 12 11 10 14 14 C 1.28047 * 117.91523 * 179.97438 * 13 12 11 15 15 C 1.50710 * 124.23982 * 179.97438 * 14 13 12 16 16 S 1.70644 * 111.52136 * 0.02562 * 14 13 12 17 17 C 1.40146 * 118.73983 * 0.02562 * 12 11 10 18 18 C 1.38911 * 120.41561 * 359.72233 * 17 12 11 19 19 N 1.46498 * 109.47120 * 295.00185 * 3 2 1 20 20 C 1.36935 * 120.00239 * 84.99640 * 19 3 2 21 21 H 1.08004 * 120.00069 * 0.02562 * 20 19 3 22 22 C 1.38811 * 120.00368 * 180.02562 * 20 19 3 23 23 N 1.31624 * 119.99540 * 359.72375 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47364 * 179.72253 * 24 22 20 26 26 H 1.48508 * 109.46883 * 299.72375 * 24 22 20 27 27 H 1.48497 * 109.46870 * 59.72186 * 24 22 20 28 28 H 1.09004 * 109.47282 * 59.99917 * 1 2 3 29 29 H 1.08994 * 109.47622 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46688 * 300.00429 * 1 2 3 31 31 H 1.08995 * 109.47015 * 239.99503 * 2 1 3 32 32 H 1.08998 * 109.46879 * 119.99905 * 2 1 3 33 33 H 1.09008 * 109.46958 * 295.00113 * 5 3 2 34 34 H 1.08993 * 109.47007 * 54.99576 * 5 3 2 35 35 H 0.96999 * 119.99793 * 0.02562 * 6 5 3 36 36 H 1.07996 * 119.69208 * 359.97438 * 10 9 7 37 37 H 1.08003 * 119.68290 * 180.02562 * 11 10 9 38 38 H 1.08999 * 109.46696 * 90.03199 * 15 14 13 39 39 H 1.09000 * 109.46777 * 210.02528 * 15 14 13 40 40 H 1.08997 * 109.46768 * 330.02859 * 15 14 13 41 41 H 1.08002 * 120.07792 * 180.30361 * 18 17 12 42 42 H 0.97004 * 119.99747 * 265.00379 * 19 3 2 43 43 H 0.97000 * 120.00481 * 0.27542 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4442 0.1257 6 7 4.0632 2.8167 0.0059 7 6 5.3858 3.0628 0.0867 8 8 6.1655 2.1458 0.2587 9 6 5.8879 4.4453 -0.0345 10 6 4.9912 5.5047 -0.2333 11 6 5.4421 6.7802 -0.3457 12 6 6.8232 7.0651 -0.2651 13 7 7.4585 8.2466 -0.3507 14 6 8.7347 8.2500 -0.2454 15 6 9.5884 9.4897 -0.3203 16 16 9.3476 6.6748 -0.0109 17 6 7.7194 6.0060 -0.0674 18 6 7.2528 4.7030 0.0522 19 7 1.6525 2.0974 -1.2518 20 6 0.4158 2.6735 -1.3688 21 1 -0.2739 2.6453 -0.5381 22 6 0.0483 3.2936 -2.5551 23 7 0.8908 3.3328 -3.5656 24 14 -1.6386 4.0801 -2.7145 25 1 -1.7810 4.6763 -4.0671 26 1 -2.6870 3.0472 -2.5159 27 1 -1.7887 5.1418 -1.6872 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8500 1.0375 1.0961 34 1 3.9954 0.8310 -0.6659 35 1 3.4411 3.5482 -0.1309 36 1 3.9320 5.3040 -0.2977 37 1 4.7380 7.5849 -0.4982 38 1 9.7104 9.9077 0.6790 39 1 10.5660 9.2334 -0.7287 40 1 9.1063 10.2243 -0.9652 41 1 7.9479 3.8915 0.2093 42 1 2.2720 2.1230 -1.9978 43 1 1.7669 2.9248 -3.4827 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495082947.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:25 Heat of formation + Delta-G solvation = 22.935541 kcal Electronic energy + Delta-G solvation = -25368.286456 eV Core-core repulsion = 21732.891631 eV Total energy + Delta-G solvation = -3635.394825 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.77047 -39.48855 -37.18575 -36.63865 -34.00909 -32.69500 -31.94282 -31.33782 -29.75644 -28.96719 -27.45729 -24.55562 -23.96107 -23.13998 -22.24413 -21.51257 -20.37074 -20.01007 -18.83476 -17.72997 -17.36739 -16.30642 -16.04029 -15.49562 -15.26145 -15.21698 -14.78742 -14.39121 -14.14083 -13.88157 -13.66489 -13.58467 -13.41392 -13.30465 -13.19997 -12.82668 -12.64780 -12.51201 -12.09873 -11.70879 -11.54326 -11.10391 -11.03599 -10.83441 -10.61170 -10.41054 -10.39667 -10.15176 -9.94042 -9.92210 -9.84409 -9.25078 -9.00637 -8.95332 -8.72570 -8.34320 -7.14933 -6.15897 -3.18281 -0.06637 0.92675 0.96474 1.41335 1.79621 2.95375 3.33637 3.47118 3.49202 3.55622 3.67148 3.69793 4.34917 4.59447 4.63769 4.72918 4.89871 4.94328 5.02054 5.05357 5.21742 5.31537 5.34235 5.47659 5.49650 5.62452 5.78610 5.83611 5.85987 5.87577 5.95464 6.05753 6.08035 6.27546 6.37353 6.43473 6.47356 6.51833 6.73647 6.90975 7.18094 7.33183 7.73329 7.74147 8.34583 8.67574 9.11912 9.98833 10.13710 11.30864 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014244 B = 0.002834 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.202461 B = 9875.920050 C =11502.522731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.168 3.832 4 H 0.056 0.944 5 C 0.113 3.887 6 N -0.705 5.705 7 C 0.556 3.444 8 O -0.548 6.548 9 C -0.113 4.113 10 C -0.071 4.071 11 C -0.068 4.068 12 C 0.104 3.896 13 N -0.470 5.470 14 C 0.092 3.908 15 C -0.083 4.083 16 S 0.105 5.895 17 C -0.196 4.196 18 C -0.008 4.008 19 N -0.733 5.733 20 C -0.329 4.329 21 H 0.068 0.932 22 C -0.042 4.042 23 N -0.940 5.940 24 Si 1.075 2.925 25 H -0.286 1.286 26 H -0.296 1.296 27 H -0.295 1.295 28 H 0.085 0.915 29 H 0.032 0.968 30 H 0.040 0.960 31 H 0.055 0.945 32 H 0.044 0.956 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.410 0.590 36 H 0.145 0.855 37 H 0.143 0.857 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.144 0.856 42 H 0.368 0.632 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.317 7.696 9.134 19.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C 0.058 3.942 4 H 0.074 0.926 5 C -0.011 4.011 6 N -0.356 5.356 7 C 0.343 3.657 8 O -0.427 6.427 9 C -0.119 4.119 10 C -0.092 4.092 11 C -0.089 4.089 12 C -0.017 4.017 13 N -0.184 5.184 14 C -0.192 4.192 15 C -0.143 4.143 16 S 0.361 5.639 17 C -0.314 4.314 18 C -0.031 4.031 19 N -0.377 5.377 20 C -0.460 4.460 21 H 0.086 0.914 22 C -0.240 4.240 23 N -0.585 5.585 24 Si 0.906 3.094 25 H -0.211 1.211 26 H -0.223 1.223 27 H -0.223 1.223 28 H 0.104 0.896 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.248 0.752 36 H 0.163 0.837 37 H 0.161 0.839 38 H 0.110 0.890 39 H 0.104 0.896 40 H 0.112 0.888 41 H 0.162 0.838 42 H 0.201 0.799 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 15.433 8.056 8.438 19.346 hybrid contribution -0.145 -0.751 0.660 1.010 sum 15.288 7.305 9.097 19.231 Atomic orbital electron populations 1.21765 0.95531 0.99640 1.03375 1.22052 0.97159 0.98172 1.00012 1.20514 0.89658 0.92894 0.91161 0.92625 1.21753 0.95753 0.82199 1.01443 1.45910 1.06763 1.11114 1.71834 1.18001 0.82754 0.87776 0.77202 1.90756 1.56121 1.45625 1.50226 1.19931 0.93445 0.93866 1.04696 1.20984 1.00498 0.91431 0.96288 1.20319 0.91580 0.97403 0.99610 1.19316 0.95251 0.85811 1.01275 1.66143 1.07850 1.27196 1.17245 1.26842 0.92973 0.99976 0.99386 1.20586 0.97446 0.91802 1.04487 1.83916 1.05754 1.01348 1.72894 1.23696 0.96566 0.99163 1.11987 1.20375 0.94856 0.93511 0.94404 1.42475 1.16869 1.67046 1.11270 1.19983 0.92601 1.32526 1.00909 0.91441 1.25694 1.05632 1.00377 0.92297 1.70893 1.08279 1.47148 1.32198 0.83307 0.74372 0.75905 0.75832 1.21136 1.22301 1.22267 0.89587 0.94856 0.94082 0.92664 0.93734 0.91449 0.91649 0.75208 0.83710 0.83932 0.89048 0.89637 0.88825 0.83798 0.79866 0.93303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.18 37.16 0.34 -2.24 16 2 C -0.13 -2.26 5.61 -26.73 -0.15 -2.41 16 3 C 0.17 3.02 2.59 -67.93 -0.18 2.85 16 4 H 0.06 1.02 8.08 -51.93 -0.42 0.60 16 5 C 0.11 1.86 5.23 -4.04 -0.02 1.84 16 6 N -0.70 -11.41 5.34 -61.33 -0.33 -11.74 16 7 C 0.56 9.25 7.76 -12.45 -0.10 9.15 16 8 O -0.55 -10.45 16.34 5.29 0.09 -10.37 16 9 C -0.11 -1.65 5.87 -105.00 -0.62 -2.27 16 10 C -0.07 -0.95 9.44 -39.73 -0.38 -1.33 16 11 C -0.07 -0.90 10.03 -39.33 -0.39 -1.29 16 12 C 0.10 1.45 7.00 -84.88 -0.59 0.85 16 13 N -0.47 -6.17 10.56 -8.96 -0.09 -6.27 16 14 C 0.09 0.94 7.29 -13.85 -0.10 0.84 16 15 C -0.08 -0.49 10.44 36.01 0.38 -0.11 16 16 S 0.10 1.06 23.11 -107.50 -2.48 -1.42 16 17 C -0.20 -2.58 6.54 -38.62 -0.25 -2.84 16 18 C -0.01 -0.12 9.62 -38.98 -0.37 -0.49 16 19 N -0.73 -16.13 4.50 -53.43 -0.24 -16.37 16 20 C -0.33 -8.21 7.75 -15.06 -0.12 -8.32 16 21 H 0.07 1.67 7.32 -52.48 -0.38 1.29 16 22 C -0.04 -1.12 5.50 -17.43 -0.10 -1.21 16 23 N -0.94 -27.30 13.70 55.49 0.76 -26.54 16 24 Si 1.07 24.49 29.92 -169.99 -5.09 19.41 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.30 -6.51 7.11 56.52 0.40 -6.10 16 27 H -0.30 -6.42 7.11 56.52 0.40 -6.02 16 28 H 0.09 1.81 5.99 -51.93 -0.31 1.50 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.04 0.69 8.14 -51.92 -0.42 0.27 16 31 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 1.03 8.14 -51.92 -0.42 0.61 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.41 6.60 6.16 -40.82 -0.25 6.35 16 36 H 0.15 1.85 6.38 -52.49 -0.33 1.52 16 37 H 0.14 1.65 8.06 -52.48 -0.42 1.23 16 38 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.14 1.90 7.64 -52.49 -0.40 1.50 16 42 H 0.37 8.67 6.63 -40.82 -0.27 8.40 16 43 H 0.26 7.35 6.77 -40.82 -0.28 7.07 16 LS Contribution 370.95 15.07 5.59 5.59 Total: -1.00 -31.12 370.95 -10.12 -41.24 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: -5.67 Total: 13.46 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: -2.65 Total: -6.98 kcal Atomic # 7 Polarization: -61.02 SS G_CDS: 0.10 Total: -60.92 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.09 Total: -10.37 kcal Atomic # 14 Polarization: 24.49 SS G_CDS: -5.09 Total: 19.41 kcal Atomic # 16 Polarization: 1.06 SS G_CDS: -2.48 Total: -1.42 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.12 -10.12 -41.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495082947.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.176 kcal (2) G-P(sol) polarization free energy of solvation -31.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds