Wall clock time and date at job start Tue Mar 31 2020 17:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47537 * 2 1 4 4 H 1.09003 * 109.47022 * 55.00041 * 3 2 1 5 5 C 1.52998 * 109.47443 * 175.00128 * 3 2 1 6 6 N 1.46500 * 109.47304 * 174.99839 * 5 3 2 7 7 C 1.34776 * 119.99630 * 179.97438 * 6 5 3 8 8 O 1.21585 * 120.00724 * 0.02562 * 7 6 5 9 9 C 1.47587 * 119.99653 * 179.97438 * 7 6 5 10 10 C 1.40203 * 120.12579 * 0.02562 * 9 7 6 11 11 C 1.35754 * 120.61455 * 179.97438 * 10 9 7 12 12 C 1.41250 * 120.63530 * 0.02562 * 11 10 9 13 13 N 1.34414 * 129.48278 * 180.02562 * 12 11 10 14 14 C 1.28047 * 117.91523 * 179.97438 * 13 12 11 15 15 C 1.50710 * 124.23982 * 179.97438 * 14 13 12 16 16 S 1.70644 * 111.52136 * 0.02562 * 14 13 12 17 17 C 1.40146 * 118.73983 * 0.02562 * 12 11 10 18 18 C 1.38911 * 120.41561 * 359.72233 * 17 12 11 19 19 N 1.46498 * 109.47120 * 295.00185 * 3 2 1 20 20 C 1.36935 * 120.00239 * 84.99640 * 19 3 2 21 21 H 1.08004 * 120.00069 * 0.02562 * 20 19 3 22 22 C 1.38811 * 120.00368 * 180.02562 * 20 19 3 23 23 N 1.31624 * 119.99540 * 359.72375 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47364 * 179.72253 * 24 22 20 26 26 H 1.48508 * 109.46883 * 299.72375 * 24 22 20 27 27 H 1.48497 * 109.46870 * 59.72186 * 24 22 20 28 28 H 1.09004 * 109.47282 * 59.99917 * 1 2 3 29 29 H 1.08994 * 109.47622 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46688 * 300.00429 * 1 2 3 31 31 H 1.08995 * 109.47015 * 239.99503 * 2 1 3 32 32 H 1.08998 * 109.46879 * 119.99905 * 2 1 3 33 33 H 1.09008 * 109.46958 * 295.00113 * 5 3 2 34 34 H 1.08993 * 109.47007 * 54.99576 * 5 3 2 35 35 H 0.96999 * 119.99793 * 0.02562 * 6 5 3 36 36 H 1.07996 * 119.69208 * 359.97438 * 10 9 7 37 37 H 1.08003 * 119.68290 * 180.02562 * 11 10 9 38 38 H 1.08999 * 109.46696 * 90.03199 * 15 14 13 39 39 H 1.09000 * 109.46777 * 210.02528 * 15 14 13 40 40 H 1.08997 * 109.46768 * 330.02859 * 15 14 13 41 41 H 1.08002 * 120.07792 * 180.30361 * 18 17 12 42 42 H 0.97004 * 119.99747 * 265.00379 * 19 3 2 43 43 H 0.97000 * 120.00481 * 0.27542 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4442 0.1257 6 7 4.0632 2.8167 0.0059 7 6 5.3858 3.0628 0.0867 8 8 6.1655 2.1458 0.2587 9 6 5.8879 4.4453 -0.0345 10 6 4.9912 5.5047 -0.2333 11 6 5.4421 6.7802 -0.3457 12 6 6.8232 7.0651 -0.2651 13 7 7.4585 8.2466 -0.3507 14 6 8.7347 8.2500 -0.2454 15 6 9.5884 9.4897 -0.3203 16 16 9.3476 6.6748 -0.0109 17 6 7.7194 6.0060 -0.0674 18 6 7.2528 4.7030 0.0522 19 7 1.6525 2.0974 -1.2518 20 6 0.4158 2.6735 -1.3688 21 1 -0.2739 2.6453 -0.5381 22 6 0.0483 3.2936 -2.5551 23 7 0.8908 3.3328 -3.5656 24 14 -1.6386 4.0801 -2.7145 25 1 -1.7810 4.6763 -4.0671 26 1 -2.6870 3.0472 -2.5159 27 1 -1.7887 5.1418 -1.6872 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8500 1.0375 1.0961 34 1 3.9954 0.8310 -0.6659 35 1 3.4411 3.5482 -0.1309 36 1 3.9320 5.3040 -0.2977 37 1 4.7380 7.5849 -0.4982 38 1 9.7104 9.9077 0.6790 39 1 10.5660 9.2334 -0.7287 40 1 9.1063 10.2243 -0.9652 41 1 7.9479 3.8915 0.2093 42 1 2.2720 2.1230 -1.9978 43 1 1.7669 2.9248 -3.4827 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495082947.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:25 Heat of formation + Delta-G solvation = 3.384845 kcal Electronic energy + Delta-G solvation = -25369.134238 eV Core-core repulsion = 21732.891631 eV Total energy + Delta-G solvation = -3636.242607 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.81314 -40.71136 -38.55852 -37.84523 -35.53752 -34.38009 -32.78194 -32.37442 -31.34993 -30.13949 -28.79156 -25.71238 -25.36312 -24.65862 -23.49272 -22.49754 -21.75007 -21.26869 -19.87948 -19.41528 -18.70783 -17.51272 -17.07245 -16.81389 -16.40595 -16.33720 -16.27405 -15.85968 -15.46866 -15.18730 -15.11386 -14.71630 -14.40340 -14.34851 -14.27141 -14.03239 -13.71016 -13.56645 -13.20480 -13.13154 -12.73825 -12.57660 -12.48285 -12.12347 -12.05009 -11.99360 -11.82099 -11.54000 -11.36858 -11.24374 -11.16187 -10.85673 -10.79741 -10.23441 -9.78037 -9.29067 -9.06061 -8.24497 -5.20530 -1.04798 -0.06792 0.05634 0.52682 0.78981 1.63203 1.70784 1.79836 1.86390 2.06519 2.57705 2.74515 2.76397 3.38321 3.49022 3.54166 3.74464 3.77477 3.86483 3.92598 3.99529 4.21701 4.27930 4.40306 4.49079 4.53809 4.61497 4.64222 4.67369 4.78033 4.82291 4.92600 5.02016 5.02550 5.05407 5.11750 5.14443 5.32437 5.40230 5.48473 5.65949 5.74992 6.40648 6.44124 6.60192 7.02415 7.16475 8.06567 8.19266 9.25722 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014244 B = 0.002834 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.202461 B = 9875.920050 C =11502.522731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.129 4.129 3 C 0.169 3.831 4 H 0.059 0.941 5 C 0.120 3.880 6 N -0.703 5.703 7 C 0.558 3.442 8 O -0.576 6.576 9 C -0.132 4.132 10 C -0.069 4.069 11 C -0.077 4.077 12 C 0.098 3.902 13 N -0.504 5.504 14 C 0.100 3.900 15 C -0.085 4.085 16 S 0.153 5.847 17 C -0.222 4.222 18 C -0.006 4.006 19 N -0.739 5.739 20 C -0.304 4.304 21 H 0.072 0.928 22 C -0.102 4.102 23 N -0.980 5.980 24 Si 1.116 2.884 25 H -0.302 1.302 26 H -0.284 1.284 27 H -0.277 1.277 28 H 0.047 0.953 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.044 0.956 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.055 0.945 35 H 0.411 0.589 36 H 0.147 0.853 37 H 0.154 0.846 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.097 0.903 41 H 0.146 0.854 42 H 0.358 0.642 43 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.306 8.497 10.704 21.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.170 4.170 3 C 0.061 3.939 4 H 0.077 0.923 5 C -0.004 4.004 6 N -0.354 5.354 7 C 0.346 3.654 8 O -0.458 6.458 9 C -0.139 4.139 10 C -0.090 4.090 11 C -0.098 4.098 12 C -0.024 4.024 13 N -0.219 5.219 14 C -0.183 4.183 15 C -0.145 4.145 16 S 0.409 5.591 17 C -0.340 4.340 18 C -0.029 4.029 19 N -0.382 5.382 20 C -0.435 4.435 21 H 0.090 0.910 22 C -0.294 4.294 23 N -0.629 5.629 24 Si 0.943 3.057 25 H -0.229 1.229 26 H -0.210 1.210 27 H -0.203 1.203 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.073 0.927 35 H 0.248 0.752 36 H 0.165 0.835 37 H 0.172 0.828 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.116 0.884 41 H 0.164 0.836 42 H 0.190 0.810 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 16.429 8.834 10.068 21.197 hybrid contribution -0.292 -0.973 0.264 1.050 sum 16.136 7.861 10.332 20.711 Atomic orbital electron populations 1.21687 0.95886 1.00563 1.01804 1.21981 0.96724 0.97185 1.01099 1.20658 0.90696 0.93325 0.89241 0.92312 1.21665 0.94412 0.82341 1.01970 1.45890 1.06815 1.11027 1.71664 1.18248 0.82459 0.88326 0.76336 1.90727 1.56663 1.46646 1.51795 1.19794 0.94152 0.92980 1.06937 1.20961 1.00392 0.91409 0.96263 1.20469 0.92032 0.97516 0.99785 1.19574 0.95658 0.86508 1.00657 1.66240 1.09162 1.26880 1.19664 1.27716 0.92679 1.01557 0.96392 1.20864 0.97709 0.89954 1.05985 1.83741 1.03069 1.00442 1.71807 1.23951 0.98762 0.98835 1.12479 1.20417 0.94577 0.94018 0.93845 1.42594 1.15882 1.67307 1.12374 1.20210 0.93152 1.29931 1.00216 0.91014 1.26788 1.07938 1.02022 0.92645 1.70996 1.08488 1.49776 1.33592 0.82741 0.71759 0.75886 0.75266 1.22914 1.21025 1.20330 0.93355 0.92833 0.93217 0.93677 0.90480 0.89674 0.92700 0.75166 0.83546 0.82803 0.87006 0.87090 0.88421 0.83630 0.80971 0.94607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.78 9.18 71.98 0.66 -4.12 16 2 C -0.13 -4.16 5.61 30.59 0.17 -3.99 16 3 C 0.17 5.94 2.59 44.99 0.12 6.05 16 4 H 0.06 2.06 8.08 -2.39 -0.02 2.04 16 5 C 0.12 3.89 5.23 86.38 0.45 4.34 16 6 N -0.70 -22.93 5.34 -466.22 -2.49 -25.42 16 7 C 0.56 18.86 7.76 86.71 0.67 19.53 16 8 O -0.58 -22.25 16.34 -3.98 -0.07 -22.32 16 9 C -0.13 -3.96 5.87 -20.11 -0.12 -4.07 16 10 C -0.07 -1.89 9.44 22.17 0.21 -1.68 16 11 C -0.08 -2.06 10.03 22.43 0.23 -1.84 16 12 C 0.10 2.68 7.00 39.95 0.28 2.96 16 13 N -0.50 -12.68 10.56 -182.19 -1.92 -14.61 16 14 C 0.10 1.82 7.29 88.66 0.65 2.47 16 15 C -0.09 -0.73 10.44 71.24 0.74 0.02 16 16 S 0.15 2.79 23.11 -56.49 -1.31 1.48 16 17 C -0.22 -5.74 6.54 22.89 0.15 -5.59 16 18 C -0.01 -0.16 9.62 22.66 0.22 0.06 16 19 N -0.74 -32.71 4.50 -322.95 -1.45 -34.16 16 20 C -0.30 -15.10 7.75 84.03 0.65 -14.45 16 21 H 0.07 3.48 7.32 -2.91 -0.02 3.46 16 22 C -0.10 -5.53 5.50 84.86 0.47 -5.06 16 23 N -0.98 -58.38 13.70 21.65 0.30 -58.08 16 24 Si 1.12 49.67 29.92 68.60 2.05 51.73 16 25 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 26 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 27 H -0.28 -11.37 7.11 99.48 0.71 -10.66 16 28 H 0.05 1.99 5.99 -2.38 -0.01 1.98 16 29 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 31 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.09 2.48 8.14 -2.38 -0.02 2.46 16 34 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.41 13.40 6.16 -92.71 -0.57 12.83 16 36 H 0.15 3.87 6.38 -2.91 -0.02 3.85 16 37 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 38 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.11 0.41 8.14 -2.39 -0.02 0.40 16 40 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.15 3.89 7.64 -2.91 -0.02 3.87 16 42 H 0.36 17.34 6.63 -92.71 -0.61 16.73 16 43 H 0.24 14.52 6.77 -92.71 -0.63 13.89 16 Total: -1.00 -67.86 370.95 0.67 -67.19 By element: Atomic # 1 Polarization: 39.56 SS G_CDS: 0.01 Total: 39.58 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: 5.55 Total: -5.38 kcal Atomic # 7 Polarization: -126.70 SS G_CDS: -5.57 Total: -132.27 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -0.07 Total: -22.32 kcal Atomic # 14 Polarization: 49.67 SS G_CDS: 2.05 Total: 51.73 kcal Atomic # 16 Polarization: 2.79 SS G_CDS: -1.31 Total: 1.48 kcal Total: -67.86 0.67 -67.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495082947.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.570 kcal (2) G-P(sol) polarization free energy of solvation -67.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds