Wall clock time and date at job start Tue Mar 31 2020 16:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.28055 * 124.24539 * 2 1 4 4 C 1.34413 * 117.91703 * 179.97438 * 3 2 1 5 5 C 1.41246 * 129.48127 * 179.97438 * 4 3 2 6 6 C 1.35745 * 120.64052 * 180.02562 * 5 4 3 7 7 C 1.40204 * 120.60967 * 359.97438 * 6 5 4 8 8 C 1.47590 * 120.12256 * 180.02562 * 7 6 5 9 9 O 1.21586 * 119.99859 * 179.97438 * 8 7 6 10 10 N 1.34776 * 120.00481 * 0.02562 * 8 7 6 11 11 C 1.46500 * 120.00386 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.46878 * 35.00073 * 11 10 8 13 13 C 1.53001 * 109.47290 * 275.00236 * 11 10 8 14 14 C 1.52999 * 109.47037 * 154.99951 * 11 10 8 15 15 H 1.09004 * 109.47434 * 295.00363 * 14 11 10 16 16 C 1.52997 * 109.47114 * 55.00170 * 14 11 10 17 17 N 1.46498 * 109.46963 * 174.99963 * 14 11 10 18 18 C 1.36943 * 119.99752 * 154.72381 * 17 14 11 19 19 H 1.08002 * 119.99793 * 0.27665 * 18 17 14 20 20 C 1.38811 * 120.00012 * 180.27737 * 18 17 14 21 21 N 1.31624 * 119.99698 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00072 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47159 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47290 * 120.00044 * 22 20 18 25 25 H 1.48503 * 109.47163 * 240.00049 * 22 20 18 26 26 C 1.39181 * 119.74934 * 0.27439 * 7 6 5 27 27 C 1.38914 * 119.84309 * 359.47122 * 26 7 6 28 28 S 1.70650 * 124.23997 * 180.02562 * 2 1 3 29 29 H 1.09005 * 109.46971 * 269.99941 * 1 2 3 30 30 H 1.08998 * 109.46984 * 29.99969 * 1 2 3 31 31 H 1.08997 * 109.47448 * 150.00471 * 1 2 3 32 32 H 1.08004 * 119.67927 * 0.04772 * 5 4 3 33 33 H 1.07997 * 119.69984 * 179.97438 * 6 5 4 34 34 H 0.96999 * 119.99467 * 0.02562 * 10 8 7 35 35 H 1.09000 * 109.47005 * 300.00291 * 13 11 10 36 36 H 1.09004 * 109.47050 * 59.99647 * 13 11 10 37 37 H 1.08998 * 109.47150 * 179.97438 * 13 11 10 38 38 H 1.08997 * 109.47293 * 179.97438 * 16 14 11 39 39 H 1.09003 * 109.47189 * 300.00067 * 16 14 11 40 40 H 1.09009 * 109.47238 * 59.99946 * 16 14 11 41 41 H 0.97001 * 120.00384 * 335.00737 * 17 14 11 42 42 H 0.96999 * 119.99739 * 180.02562 * 21 20 18 43 43 H 1.07997 * 120.07478 * 179.72566 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2276 1.0585 0.0000 4 6 3.5635 0.9104 0.0005 5 6 4.5763 1.8949 0.0002 6 6 5.8865 1.5397 0.0003 7 6 6.2597 0.1883 0.0014 8 6 7.6874 -0.1858 0.0021 9 8 8.0086 -1.3585 0.0035 10 7 8.6352 0.7724 0.0023 11 6 10.0524 0.4011 0.0035 12 1 10.1909 -0.5056 -0.5853 13 6 10.5128 0.1510 1.4410 14 6 10.8775 1.5361 -0.6061 15 1 10.6115 1.6552 -1.6565 16 6 10.5872 2.8376 0.1441 17 7 12.3031 1.2168 -0.4965 18 6 13.1970 1.7642 -1.3778 19 1 12.8517 2.4347 -2.1508 20 6 14.5471 1.4572 -1.2775 21 7 14.9678 0.6396 -0.3357 22 14 15.7666 2.2043 -2.4791 23 1 15.0453 3.0836 -3.4339 24 1 16.7708 3.0038 -1.7324 25 1 16.4533 1.1199 -3.2260 26 6 5.2789 -0.7991 -0.0035 27 6 3.9368 -0.4404 0.0017 28 16 2.4672 -1.4107 -0.0006 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3634 -0.8900 -0.5137 32 1 4.3057 2.9405 0.0001 33 1 6.6484 2.3051 -0.0004 34 1 8.3790 1.7080 0.0023 35 1 10.3742 1.0577 2.0299 36 1 9.9249 -0.6577 1.8753 37 1 11.5671 -0.1258 1.4419 38 1 11.1754 3.6461 -0.2899 39 1 9.5265 3.0751 0.0626 40 1 10.8533 2.7186 1.1945 41 1 12.6133 0.6146 0.1977 42 1 15.9112 0.4253 -0.2654 43 1 5.5605 -1.8417 -0.0072 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505723531.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:21 Heat of formation + Delta-G solvation = 31.862787 kcal Electronic energy + Delta-G solvation = -25119.393066 eV Core-core repulsion = 21484.385356 eV Total energy + Delta-G solvation = -3635.007710 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.95011 -39.74004 -37.42641 -36.67455 -34.02878 -32.38537 -31.68053 -31.47050 -29.69864 -28.41885 -28.23678 -24.77231 -24.48242 -23.87482 -22.68943 -21.69138 -20.48296 -19.40426 -18.91013 -17.87549 -17.33362 -16.32125 -16.10896 -15.61029 -15.40017 -15.00841 -14.56958 -14.46721 -14.31621 -14.15867 -13.79405 -13.57983 -13.49889 -13.44554 -12.91263 -12.75373 -12.65195 -12.49055 -12.04361 -11.73642 -11.65318 -11.33137 -11.26160 -10.97019 -10.85651 -10.58091 -10.50813 -10.26849 -10.07626 -10.00847 -9.93718 -9.67339 -9.07353 -8.97009 -8.83955 -8.50903 -7.02867 -5.80619 -3.10255 -0.22329 0.76980 0.78345 1.27683 1.64465 2.81696 3.17913 3.39816 3.41556 3.47332 3.49385 3.54292 4.17682 4.46412 4.51857 4.58733 4.70930 4.76070 4.88238 4.91680 5.07993 5.31335 5.36285 5.41960 5.44582 5.59666 5.61913 5.69046 5.75565 5.79844 5.86944 6.03543 6.11802 6.18218 6.26375 6.36605 6.42649 6.59659 6.68696 6.86971 7.04315 7.17038 7.58805 7.67233 8.25287 8.37876 9.49256 10.04222 10.39001 11.41954 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.032696 B = 0.002040 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.155336 B =13719.040734 C =14056.028239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.093 3.907 3 N -0.472 5.472 4 C 0.104 3.896 5 C -0.070 4.070 6 C -0.076 4.076 7 C -0.113 4.113 8 C 0.556 3.444 9 O -0.535 6.535 10 N -0.711 5.711 11 C 0.135 3.865 12 H 0.090 0.910 13 C -0.160 4.160 14 C 0.167 3.833 15 H 0.052 0.948 16 C -0.169 4.169 17 N -0.719 5.719 18 C -0.241 4.241 19 H 0.072 0.928 20 C -0.012 4.012 21 N -0.931 5.931 22 Si 0.908 3.092 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.291 1.291 26 C -0.006 4.006 27 C -0.196 4.196 28 S 0.113 5.887 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.142 0.858 33 H 0.141 0.859 34 H 0.397 0.603 35 H 0.056 0.944 36 H 0.051 0.949 37 H 0.078 0.922 38 H 0.058 0.942 39 H 0.031 0.969 40 H 0.054 0.946 41 H 0.387 0.613 42 H 0.255 0.745 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.750 -0.126 2.790 29.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.191 4.191 3 N -0.187 5.187 4 C -0.018 4.018 5 C -0.091 4.091 6 C -0.097 4.097 7 C -0.121 4.121 8 C 0.342 3.658 9 O -0.413 6.413 10 N -0.363 5.363 11 C 0.031 3.969 12 H 0.108 0.892 13 C -0.218 4.218 14 C 0.057 3.943 15 H 0.070 0.930 16 C -0.229 4.229 17 N -0.362 5.362 18 C -0.372 4.372 19 H 0.090 0.910 20 C -0.208 4.208 21 N -0.579 5.579 22 Si 0.739 3.261 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.218 1.218 26 C -0.029 4.029 27 C -0.314 4.314 28 S 0.369 5.631 29 H 0.110 0.890 30 H 0.112 0.888 31 H 0.104 0.896 32 H 0.159 0.841 33 H 0.158 0.842 34 H 0.235 0.765 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.096 0.904 38 H 0.077 0.923 39 H 0.050 0.950 40 H 0.073 0.927 41 H 0.223 0.777 42 H 0.065 0.935 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -29.959 -1.438 2.642 30.110 hybrid contribution 1.366 1.433 -0.364 2.013 sum -28.593 -0.004 2.278 28.684 Atomic orbital electron populations 1.20597 0.84626 1.04739 1.04454 1.26867 1.01976 0.91000 0.99238 1.66156 1.04111 1.31323 1.17080 1.19316 0.89153 0.91708 1.01602 1.20268 0.90117 0.98738 0.99990 1.20866 0.96137 0.95291 0.97421 1.19978 0.93621 0.93576 1.04876 1.18001 0.84879 0.85896 0.76993 1.90799 1.82684 1.18005 1.49787 1.46175 1.06817 1.09325 1.74004 1.21401 0.77868 0.99949 0.97677 0.89162 1.22148 1.02498 1.01294 0.95857 1.20366 0.86161 0.90796 0.97015 0.92953 1.22548 0.98058 1.00608 1.01704 1.42457 0.99589 1.56364 1.37835 1.19268 0.87940 1.21751 1.08206 0.91044 1.24753 0.97086 1.00028 0.98975 1.69669 1.14653 1.38915 1.34648 0.86111 0.81436 0.78277 0.80297 1.20560 1.21879 1.21844 1.20435 0.88087 1.00626 0.93710 1.23740 0.98827 0.96769 1.12083 1.84032 0.95274 1.10104 1.73675 0.88961 0.88816 0.89560 0.84070 0.84184 0.76546 0.92459 0.93029 0.90366 0.92266 0.95000 0.92708 0.77746 0.93472 0.83616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.36 10.44 36.00 0.38 0.02 16 2 C 0.09 0.78 7.29 -13.85 -0.10 0.68 16 3 N -0.47 -5.11 10.56 -8.96 -0.09 -5.20 16 4 C 0.10 1.16 7.00 -84.88 -0.59 0.57 16 5 C -0.07 -0.67 10.03 -39.33 -0.39 -1.07 16 6 C -0.08 -0.72 9.44 -39.74 -0.38 -1.09 16 7 C -0.11 -1.35 5.87 -104.99 -0.62 -1.97 16 8 C 0.56 8.12 7.73 -12.45 -0.10 8.02 16 9 O -0.53 -9.72 16.00 5.29 0.08 -9.64 16 10 N -0.71 -9.69 4.94 -54.83 -0.27 -9.96 16 11 C 0.14 2.29 2.62 -67.93 -0.18 2.11 16 12 H 0.09 1.75 7.58 -51.93 -0.39 1.36 16 13 C -0.16 -2.66 9.00 37.16 0.33 -2.32 16 14 C 0.17 3.14 2.93 -67.93 -0.20 2.94 16 15 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 16 C -0.17 -2.72 9.01 37.16 0.33 -2.39 16 17 N -0.72 -17.30 5.03 -53.43 -0.27 -17.57 16 18 C -0.24 -6.49 9.93 -15.06 -0.15 -6.64 16 19 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 20 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 21 N -0.93 -27.66 13.06 55.49 0.72 -26.94 16 22 Si 0.91 22.11 29.55 -169.99 -5.02 17.08 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 C -0.01 -0.07 9.62 -38.98 -0.37 -0.44 16 27 C -0.20 -2.16 6.54 -38.62 -0.25 -2.41 16 28 S 0.11 0.95 23.11 -107.50 -2.48 -1.53 16 29 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16 32 H 0.14 1.06 8.06 -52.48 -0.42 0.63 16 33 H 0.14 0.97 6.38 -52.49 -0.33 0.64 16 34 H 0.40 4.34 4.59 -40.82 -0.19 4.15 16 35 H 0.06 0.88 6.57 -51.93 -0.34 0.53 16 36 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.08 1.45 6.29 -51.93 -0.33 1.13 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.03 0.39 6.29 -51.93 -0.33 0.06 16 40 H 0.05 0.90 6.57 -51.92 -0.34 0.56 16 41 H 0.39 9.85 5.77 -40.82 -0.24 9.61 16 42 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.15 1.70 7.64 -52.49 -0.40 1.30 16 LS Contribution 367.18 15.07 5.53 5.53 Total: -1.00 -33.14 367.18 -9.57 -42.71 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -5.39 Total: 9.95 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -2.38 Total: -4.44 kcal Atomic # 7 Polarization: -59.75 SS G_CDS: 0.09 Total: -59.66 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.08 Total: -9.64 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Atomic # 16 Polarization: 0.95 SS G_CDS: -2.48 Total: -1.53 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.14 -9.57 -42.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505723531.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.574 kcal (2) G-P(sol) polarization free energy of solvation -33.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds